Wall clock time and date at job start Mon Mar 30 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 H 1.08997 * 110.91423 * 57.44808 * 3 2 1 5 5 C 1.55154 * 111.00201 * 293.54838 * 3 2 1 6 6 C 1.54329 * 102.93962 * 206.42492 * 5 3 2 7 7 N 1.47024 * 107.27268 * 22.19049 * 6 5 3 8 8 C 1.34773 * 125.64994 * 181.02186 * 7 6 5 9 9 O 1.21282 * 120.00127 * 180.02562 * 8 7 6 10 10 C 1.50704 * 119.99840 * 0.02700 * 8 7 6 11 11 H 1.09002 * 109.47092 * 319.99655 * 10 8 7 12 12 N 1.46896 * 109.47098 * 199.99726 * 10 8 7 13 13 C 1.52999 * 109.47077 * 79.99991 * 10 8 7 14 14 C 1.52995 * 109.47088 * 184.99789 * 13 10 8 15 15 C 1.53007 * 109.47329 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46894 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00599 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99675 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00210 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00019 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 269.99914 * 20 18 16 22 22 H 1.48503 * 109.47399 * 29.99403 * 20 18 16 23 23 H 1.48498 * 109.47295 * 150.00010 * 20 18 16 24 24 C 1.47423 * 108.69912 * 1.28719 * 7 6 5 25 25 H 1.09001 * 109.46926 * 299.99977 * 1 2 3 26 26 H 1.08998 * 109.46886 * 59.99664 * 1 2 3 27 27 H 1.08998 * 109.46844 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46926 * 240.00023 * 2 1 3 29 29 H 1.08998 * 109.47245 * 119.99646 * 2 1 3 30 30 H 1.08996 * 110.72297 * 88.06403 * 5 3 2 31 31 H 1.08997 * 110.72284 * 324.78561 * 5 3 2 32 32 H 1.09004 * 109.88095 * 262.77429 * 6 5 3 33 33 H 1.08999 * 110.01347 * 141.68044 * 6 5 3 34 34 H 1.00902 * 111.00319 * 176.04615 * 12 10 8 35 35 H 1.00905 * 111.00150 * 300.00153 * 12 10 8 36 36 H 1.09000 * 109.47102 * 64.99665 * 13 10 8 37 37 H 1.08998 * 109.47172 * 304.99722 * 13 10 8 38 38 H 1.09000 * 109.47250 * 59.99968 * 14 13 10 39 39 H 1.08999 * 109.47531 * 299.99756 * 14 13 10 40 40 H 1.08995 * 109.46729 * 60.00173 * 15 14 13 41 41 H 1.09007 * 109.46460 * 300.00028 * 15 14 13 42 42 H 0.96998 * 119.99640 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36696 * 94.48572 * 24 7 6 44 44 H 1.09008 * 110.36664 * 216.80095 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6532 1.9920 0.8582 5 6 1.6798 2.1597 -1.3278 6 6 2.7790 3.2361 -1.4485 7 7 3.9176 2.7909 -0.6317 8 6 5.0715 3.4653 -0.4586 9 8 5.9468 3.0001 0.2402 10 6 5.2742 4.7975 -1.1335 11 1 4.8634 4.7599 -2.1424 12 7 6.7103 5.0990 -1.2004 13 6 4.5608 5.8886 -0.3326 14 6 4.6606 7.2188 -1.0819 15 6 3.9478 8.3102 -0.2807 16 6 4.0456 9.6203 -1.0191 17 1 4.5640 9.6696 -1.9653 18 6 3.4725 10.7559 -0.4871 19 7 3.5582 11.8993 -1.1311 20 14 2.5753 10.6706 1.1491 21 1 1.1428 10.3589 0.9125 22 1 3.1807 9.6073 1.9908 23 1 2.6891 11.9776 1.8448 24 6 3.5903 1.4816 -0.0385 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.6943 2.6206 -1.2622 31 1 1.7267 1.4650 -2.1664 32 1 2.4061 4.1902 -1.0758 33 1 3.0872 3.3396 -2.4889 34 1 6.8767 5.9564 -1.7058 35 1 7.1148 5.1393 -0.2769 36 1 5.0304 5.9867 0.6461 37 1 3.5119 5.6202 -0.2071 38 1 4.1910 7.1207 -2.0606 39 1 5.7095 7.4874 -1.2074 40 1 4.4178 8.4082 0.6978 41 1 2.8988 8.0419 -0.1548 42 1 3.1553 12.6982 -0.7566 43 1 3.9770 0.6753 -0.6619 44 1 3.9964 1.4101 0.9706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594446857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:12 Heat of formation + Delta-G solvation = -64.688741 kcal Electronic energy + Delta-G solvation = -20823.810585 eV Core-core repulsion = 17774.708975 eV Total energy + Delta-G solvation = -3049.101610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.32129 -38.13534 -36.05145 -34.31782 -33.35189 -31.47902 -30.44796 -29.29480 -28.04360 -25.73230 -23.61871 -23.13956 -21.79779 -20.48408 -20.21557 -19.08327 -17.47572 -16.77513 -16.43981 -15.63910 -15.20681 -14.83745 -14.59211 -14.39833 -14.06690 -14.05834 -13.59561 -13.48909 -13.00949 -12.77372 -12.60655 -12.48671 -12.33470 -12.08387 -11.89365 -11.58964 -11.43795 -11.12024 -11.04181 -10.96047 -10.83865 -10.76242 -10.05508 -9.97479 -9.79617 -9.52071 -9.24596 -8.74817 -8.58562 -8.51379 -6.08671 -4.07106 2.68179 2.86308 3.26541 3.34736 3.38231 4.08112 4.30015 4.41076 4.42951 4.64609 4.77806 4.85027 4.93694 5.03225 5.06744 5.14926 5.20893 5.23585 5.25707 5.42939 5.44397 5.51818 5.56679 5.62830 5.65428 5.71081 5.79142 5.81929 5.89019 6.01770 6.12704 6.18657 6.41790 6.53778 6.79468 7.13082 7.21042 7.34582 7.46329 7.57694 7.74356 8.20287 8.48748 8.95914 9.53860 11.04750 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.004027 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.359710 B = 6951.114522 C = 7893.289246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.126 4.126 6 C 0.095 3.905 7 N -0.622 5.622 8 C 0.540 3.460 9 O -0.535 6.535 10 C 0.080 3.920 11 H 0.099 0.901 12 N -0.831 5.831 13 C -0.150 4.150 14 C -0.100 4.100 15 C -0.013 4.013 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.287 1.287 24 C 0.111 3.889 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.353 0.647 35 H 0.349 0.651 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.014 0.986 41 H 0.010 0.990 42 H 0.263 0.737 43 H 0.066 0.934 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 -23.069 0.498 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.122 4.122 4 H 0.104 0.896 5 C -0.164 4.164 6 C -0.028 4.028 7 N -0.357 5.357 8 C 0.328 3.672 9 O -0.411 6.411 10 C -0.035 4.035 11 H 0.117 0.883 12 N -0.363 5.363 13 C -0.190 4.190 14 C -0.138 4.138 15 C -0.050 4.050 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.191 1.191 23 H -0.213 1.213 24 C -0.012 4.012 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.882 -23.754 0.483 24.255 hybrid contribution -0.886 1.071 1.315 1.913 sum -5.767 -22.683 1.798 23.474 Atomic orbital electron populations 1.21768 0.95404 1.01674 1.02131 1.21442 0.96205 0.95004 1.02376 1.22487 0.94358 0.96855 0.98531 0.89587 1.22717 0.98460 0.97461 0.97743 1.22157 0.86378 0.98615 0.95688 1.48459 1.16018 1.21064 1.50197 1.20429 0.79904 0.86023 0.80812 1.90660 1.41570 1.69457 1.39401 1.21384 0.90970 0.91122 1.00019 0.88277 1.58675 1.10603 1.42713 1.24305 1.22445 1.00848 0.95941 0.99737 1.21476 1.00921 0.92489 0.98925 1.19555 0.95084 0.94451 0.95907 1.21140 1.35726 0.91457 1.07676 0.91013 1.25040 0.95839 0.95363 0.97254 1.69915 1.45482 0.99732 1.39057 0.86780 0.80391 0.77484 0.84630 1.20296 1.19108 1.21333 1.22278 0.94427 0.85281 0.99216 0.92643 0.92419 0.92719 0.91622 0.91630 0.89794 0.90425 0.90650 0.91091 0.83202 0.83739 0.91781 0.91598 0.92442 0.92697 0.96750 0.97140 0.92704 0.91557 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.76 37.16 0.36 -0.48 16 2 C -0.11 -0.68 5.45 -26.73 -0.15 -0.83 16 3 C -0.10 -0.79 3.09 -88.36 -0.27 -1.06 16 4 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -0.90 5.59 -24.90 -0.14 -1.04 16 6 C 0.09 0.90 6.18 -3.06 -0.02 0.88 16 7 N -0.62 -7.55 3.32 -170.37 -0.57 -8.11 16 8 C 0.54 8.19 7.10 -10.99 -0.08 8.11 16 9 O -0.54 -9.88 16.50 5.56 0.09 -9.79 16 10 C 0.08 1.14 2.62 -68.87 -0.18 0.96 16 11 H 0.10 1.29 7.52 -51.93 -0.39 0.90 16 12 N -0.83 -11.94 8.94 -5.65 -0.05 -11.99 16 13 C -0.15 -2.32 4.83 -26.73 -0.13 -2.45 16 14 C -0.10 -1.85 4.92 -26.73 -0.13 -1.98 16 15 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 16 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 20 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.11 1.13 6.38 -2.41 -0.02 1.12 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.08 0.49 8.01 -51.93 -0.42 0.07 16 32 H 0.08 0.75 6.69 -51.93 -0.35 0.40 16 33 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 34 H 0.35 4.72 7.55 -39.29 -0.30 4.42 16 35 H 0.35 5.14 8.58 -39.29 -0.34 4.81 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.97 6.61 -51.93 -0.34 0.63 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 1.00 6.87 -51.93 -0.36 0.64 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 43 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 44 H 0.08 0.87 8.04 -51.92 -0.42 0.45 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -32.76 345.53 -8.36 -41.12 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.86 Total: 3.91 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.29 Total: -10.36 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.16 Total: -47.04 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.76 -8.36 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594446857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.570 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds