Wall clock time and date at job start Mon Mar 30 2020 05:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46804 * 2 1 4 4 H 1.08988 * 110.27718 * 304.36292 * 3 2 1 5 5 C 1.54953 * 110.39083 * 182.21507 * 3 2 1 6 6 C 1.55305 * 100.94146 * 204.60034 * 5 3 2 7 7 H 1.09002 * 111.02199 * 275.86702 * 6 5 3 8 8 N 1.46893 * 110.84928 * 152.32508 * 6 5 3 9 9 C 1.46898 * 111.00352 * 160.71740 * 8 6 5 10 10 C 1.53039 * 109.46502 * 155.00161 * 9 8 6 11 11 C 1.53191 * 109.31357 * 181.36985 * 10 9 8 12 12 N 1.46927 * 108.77891 * 305.36412 * 11 10 9 13 13 C 1.36928 * 120.63324 * 233.58736 * 12 11 10 14 14 H 1.07993 * 120.00446 * 152.65899 * 13 12 11 15 15 C 1.38814 * 119.99840 * 332.93609 * 13 12 11 16 16 N 1.31622 * 119.99914 * 159.00685 * 15 13 12 17 17 Si 1.86802 * 120.00086 * 339.01001 * 15 13 12 18 18 H 1.48496 * 109.47180 * 93.08214 * 17 15 13 19 19 H 1.48499 * 109.47229 * 213.08665 * 17 15 13 20 20 H 1.48505 * 109.47002 * 333.08521 * 17 15 13 21 21 C 1.46931 * 118.73574 * 53.85580 * 12 11 10 22 22 C 1.53047 * 109.44642 * 275.06274 * 9 8 6 23 23 C 1.54389 * 102.25177 * 34.13096 * 6 5 3 24 24 O 1.43233 * 107.58863 * 338.64966 * 23 6 5 25 25 H 1.08994 * 109.47343 * 60.00113 * 1 2 3 26 26 H 1.09003 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47446 * 299.99375 * 1 2 3 28 28 H 1.08999 * 109.47446 * 240.00625 * 2 1 3 29 29 H 1.08999 * 109.47299 * 120.00352 * 2 1 3 30 30 H 1.08994 * 111.12124 * 86.68171 * 5 3 2 31 31 H 1.08994 * 111.12400 * 322.51802 * 5 3 2 32 32 H 1.00905 * 111.00114 * 284.67099 * 8 6 5 33 33 H 1.09001 * 109.45987 * 35.02472 * 9 8 6 34 34 H 1.08996 * 109.49822 * 61.41870 * 10 9 8 35 35 H 1.09000 * 109.49156 * 301.31934 * 10 9 8 36 36 H 1.08996 * 109.58781 * 185.57271 * 11 10 9 37 37 H 1.09004 * 109.70488 * 65.21834 * 11 10 9 38 38 H 0.97009 * 119.99714 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.58228 * 65.93392 * 21 12 11 40 40 H 1.09000 * 109.58250 * 186.35414 * 21 12 11 41 41 H 1.09001 * 109.49299 * 298.56852 * 22 9 8 42 42 H 1.09001 * 109.49773 * 58.66344 * 22 9 8 43 43 H 1.09007 * 109.82625 * 98.16125 * 23 6 5 44 44 H 1.09000 * 109.83059 * 219.12863 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6217 1.9910 -0.8439 5 6 3.5882 1.4679 -0.0561 6 6 3.8839 2.8506 0.5861 7 1 3.8161 3.6481 -0.1539 8 7 5.2012 2.8543 1.2360 9 6 5.6854 4.2265 1.4370 10 6 6.6746 4.2525 2.6044 11 6 7.1511 5.6904 2.8329 12 7 7.6923 6.2153 1.5718 13 6 8.9516 6.7506 1.5222 14 1 9.5124 6.7269 0.5996 15 6 9.5097 7.3185 2.6592 16 7 10.8154 7.4546 2.7538 17 14 8.4076 7.8895 4.0552 18 1 8.2655 6.7979 5.0519 19 1 9.0108 9.0796 4.7071 20 1 7.0701 8.2448 3.5164 21 6 6.8541 6.1604 0.3663 22 6 6.3830 4.7122 0.1642 23 6 2.7549 2.9743 1.6319 24 8 1.6988 2.0919 1.2351 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9446 1.4285 -1.0854 31 1 4.0160 0.6597 0.5370 32 1 5.1753 2.3486 2.1088 33 1 4.8422 4.8800 1.6608 34 1 7.5299 3.6186 2.3707 35 1 6.1836 3.8844 3.5053 36 1 7.9287 5.7006 3.5966 37 1 6.3133 6.3082 3.1562 38 1 11.2054 7.8519 3.5483 39 1 5.9910 6.8143 0.4913 40 1 7.4358 6.4809 -0.4980 41 1 7.2411 4.0740 -0.0464 42 1 5.6846 4.6713 -0.6716 43 1 3.1281 2.6859 2.6147 44 1 2.3884 4.0004 1.6608 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594928419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:28 Heat of formation + Delta-G solvation = -31.423443 kcal Electronic energy + Delta-G solvation = -21317.652142 eV Core-core repulsion = 18269.993023 eV Total energy + Delta-G solvation = -3047.659119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99925 -38.12094 -35.34714 -33.76446 -32.51278 -31.06390 -30.34033 -29.17654 -27.40800 -24.46965 -23.81679 -22.91992 -21.61956 -21.36414 -20.51562 -19.33212 -17.31198 -16.78271 -16.12602 -15.55485 -15.09411 -14.90995 -14.19323 -14.01848 -13.91499 -13.88859 -13.49819 -13.44940 -13.20955 -12.73915 -12.39972 -12.28212 -11.96901 -11.82051 -11.77312 -11.50679 -11.23426 -11.18571 -10.96573 -10.78871 -10.72655 -10.43133 -10.20174 -9.95089 -9.71465 -9.70400 -9.42260 -8.62931 -8.35649 -6.98059 -5.94776 -3.29982 3.30698 3.47533 3.50178 3.54638 4.08813 4.38769 4.52596 4.59389 4.72499 4.85612 4.91625 4.95398 5.00798 5.12107 5.24006 5.29191 5.38482 5.39904 5.53768 5.54717 5.59105 5.67577 5.68445 5.77419 5.81386 5.87968 5.96819 6.04996 6.06895 6.16985 6.26822 6.33266 6.38836 6.59881 6.64476 6.74674 6.83600 6.94929 7.18046 7.39903 7.96772 8.33664 8.94582 9.72497 10.10532 11.21341 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047079 B = 0.003725 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.596223 B = 7514.667470 C = 7767.865746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.069 0.931 5 C -0.139 4.139 6 C 0.057 3.943 7 H 0.094 0.906 8 N -0.672 5.672 9 C 0.094 3.906 10 C -0.135 4.135 11 C 0.129 3.871 12 N -0.605 5.605 13 C -0.259 4.259 14 H 0.086 0.914 15 C 0.022 3.978 16 N -0.908 5.908 17 Si 0.882 3.118 18 H -0.289 1.289 19 H -0.303 1.303 20 H -0.272 1.272 21 C 0.147 3.853 22 C -0.119 4.119 23 C 0.023 3.977 24 O -0.378 6.378 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.340 0.660 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.019 0.981 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 -12.989 -4.760 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.019 3.981 4 H 0.087 0.913 5 C -0.177 4.177 6 C -0.054 4.054 7 H 0.112 0.888 8 N -0.303 5.303 9 C -0.015 4.015 10 C -0.174 4.174 11 C 0.002 3.998 12 N -0.329 5.329 13 C -0.387 4.387 14 H 0.103 0.897 15 C -0.177 4.177 16 N -0.551 5.551 17 Si 0.713 3.287 18 H -0.217 1.217 19 H -0.231 1.231 20 H -0.197 1.197 21 C 0.021 3.979 22 C -0.159 4.159 23 C -0.056 4.056 24 O -0.298 6.298 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.793 -13.029 -5.155 22.648 hybrid contribution -0.902 0.752 1.573 1.963 sum -18.695 -12.277 -3.583 22.651 Atomic orbital electron populations 1.21714 0.95391 1.01374 1.02238 1.21655 0.96695 0.94881 1.02627 1.23048 0.94106 0.93607 0.87332 0.91297 1.23268 0.94438 0.97583 1.02448 1.23166 0.87907 0.98161 0.96169 0.88772 1.60609 1.23590 1.16392 1.29744 1.21502 0.96056 0.87198 0.96731 1.22223 0.99074 1.00342 0.95788 1.21294 0.97173 0.91135 0.90155 1.44365 1.14885 1.69386 1.04259 1.18937 0.88700 1.31944 0.99098 0.89661 1.25280 0.95507 0.98983 0.97893 1.69847 1.09320 1.46928 1.29051 0.86956 0.81397 0.77826 0.82517 1.21677 1.23145 1.19673 1.21041 0.93606 0.92810 0.90454 1.22099 0.99779 0.98669 0.95308 1.23963 0.88979 0.94195 0.98474 1.88396 1.41760 1.59444 1.40151 0.92911 0.92895 0.92081 0.90768 0.91281 0.89673 0.89923 0.84055 0.94381 0.90711 0.93128 0.90770 0.95952 0.92788 0.96270 0.91690 0.91180 0.93195 0.91511 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.83 37.16 0.37 -0.80 16 2 C -0.12 -0.98 5.68 -26.73 -0.15 -1.13 16 3 C 0.08 0.73 3.43 -25.70 -0.09 0.64 16 4 H 0.07 0.63 8.14 -51.94 -0.42 0.20 16 5 C -0.14 -1.33 6.27 -24.48 -0.15 -1.49 16 6 C 0.06 0.64 3.07 -65.77 -0.20 0.43 16 7 H 0.09 1.08 7.22 -51.93 -0.37 0.71 16 8 N -0.67 -8.53 6.17 -97.66 -0.60 -9.14 16 9 C 0.09 1.43 2.33 -67.67 -0.16 1.27 16 10 C -0.13 -2.33 5.36 -26.61 -0.14 -2.48 16 11 C 0.13 2.79 4.21 -3.71 -0.02 2.77 16 12 N -0.61 -14.39 2.77 -172.05 -0.48 -14.86 16 13 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 14 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 15 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 16 N -0.91 -27.96 13.97 55.49 0.78 -27.19 16 17 Si 0.88 22.44 24.35 -169.99 -4.14 18.30 16 18 H -0.29 -7.07 6.62 56.52 0.37 -6.69 16 19 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 20 H -0.27 -6.79 6.64 56.52 0.38 -6.42 16 21 C 0.15 2.90 6.54 -3.48 -0.02 2.87 16 22 C -0.12 -1.96 5.59 -26.38 -0.15 -2.11 16 23 C 0.02 0.25 7.35 37.89 0.28 0.53 16 24 O -0.38 -4.50 10.69 -35.23 -0.38 -4.88 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.55 7.91 -51.93 -0.41 0.14 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.80 8.06 -51.93 -0.42 0.39 16 32 H 0.34 4.04 7.76 -39.29 -0.30 3.73 16 33 H 0.04 0.59 7.75 -51.93 -0.40 0.18 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 1.77 4.48 -51.93 -0.23 1.54 16 37 H 0.02 0.48 7.08 -51.93 -0.37 0.12 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.28 7.93 -51.93 -0.41 0.86 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.05 0.72 7.43 -51.93 -0.39 0.34 16 43 H 0.07 0.74 7.57 -51.93 -0.39 0.35 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -30.31 332.30 -8.45 -38.77 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.96 Total: 0.32 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.68 Total: -6.33 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.30 Total: -51.19 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.38 Total: -4.88 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.31 -8.45 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594928419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.343 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds