Wall clock time and date at job start Mon Mar 30 2020 04:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 5 5 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 6 6 N 1.46496 * 109.47337 * 300.00145 * 4 2 1 7 7 C 1.34777 * 120.00258 * 154.99817 * 6 4 2 8 8 O 1.21277 * 119.99957 * 359.97438 * 7 6 4 9 9 C 1.50706 * 120.00195 * 180.02562 * 7 6 4 10 10 H 1.09006 * 109.46706 * 320.00133 * 9 7 6 11 11 N 1.46895 * 109.47321 * 199.99968 * 9 7 6 12 12 C 1.53001 * 109.47149 * 79.99330 * 9 7 6 13 13 C 1.52999 * 109.47034 * 185.00212 * 12 9 7 14 14 C 1.50695 * 109.47217 * 180.02562 * 13 12 9 15 15 H 1.08002 * 120.00111 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00339 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99737 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00285 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47230 * 59.99529 * 18 16 14 20 20 H 1.48497 * 109.47364 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47182 * 299.99949 * 18 16 14 22 22 C 1.52997 * 109.47482 * 179.97438 * 4 2 1 23 23 C 1.53010 * 117.50049 * 248.74743 * 22 4 2 24 24 C 1.53005 * 117.50225 * 180.09005 * 22 4 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 0.97002 * 120.00183 * 335.00285 * 6 4 2 33 33 H 1.00905 * 110.99912 * 299.99676 * 11 9 7 34 34 H 1.00896 * 111.00236 * 63.94833 * 11 9 7 35 35 H 1.08999 * 109.47621 * 305.00317 * 12 9 7 36 36 H 1.09005 * 109.46804 * 65.00412 * 12 9 7 37 37 H 1.09004 * 109.46875 * 300.00021 * 13 12 9 38 38 H 1.08995 * 109.47306 * 60.00382 * 13 12 9 39 39 H 0.96999 * 120.00387 * 179.97438 * 17 16 14 40 40 H 1.09002 * 115.54867 * 34.41760 * 22 4 2 41 41 H 1.09001 * 117.49497 * 359.97438 * 23 22 4 42 42 H 1.08995 * 117.49838 * 145.01756 * 23 22 4 43 43 H 1.08998 * 117.50260 * 214.98355 * 24 22 4 44 44 H 1.09004 * 117.49712 * 359.97362 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 1 1.6768 -0.2075 -2.1391 6 7 1.5518 -2.1025 -1.2491 7 6 1.4231 -2.7718 -2.4118 8 8 1.7111 -2.2305 -3.4582 9 6 0.9202 -4.1925 -2.4119 10 1 1.3545 -4.7316 -1.5698 11 7 1.3089 -4.8495 -3.6669 12 6 -0.6046 -4.1938 -2.2864 13 6 -1.1048 -5.6342 -2.1610 14 6 -2.6067 -5.6356 -2.0380 15 1 -3.1502 -4.7023 -2.0479 16 6 -3.2871 -6.8282 -1.9119 17 7 -2.6253 -7.9646 -1.8994 18 14 -5.1487 -6.8298 -1.7587 19 1 -5.7453 -6.2023 -2.9653 20 1 -5.6343 -8.2279 -1.6371 21 1 -5.5469 -6.0604 -0.5527 22 6 3.5700 -0.7207 -1.2494 23 6 4.2760 0.1288 -2.3083 24 6 4.2766 -1.3974 -2.4258 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.3210 -2.5353 -0.4123 33 1 0.9184 -4.3681 -4.4631 34 1 2.3126 -4.9189 -3.7430 35 1 -0.8969 -3.6293 -1.4009 36 1 -1.0424 -3.7329 -3.1719 37 1 -0.8126 -6.1987 -3.0466 38 1 -0.6670 -6.0951 -1.2755 39 1 -3.1038 -8.8036 -1.8102 40 1 4.0403 -0.7961 -0.2690 41 1 3.6504 0.6869 -3.0048 42 1 5.2109 0.6119 -2.0245 43 1 5.2118 -1.9177 -2.2194 44 1 3.6513 -1.8434 -3.1993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595260010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:36 Heat of formation + Delta-G solvation = -62.708938 kcal Electronic energy + Delta-G solvation = -21224.982868 eV Core-core repulsion = 18175.967108 eV Total energy + Delta-G solvation = -3049.015760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37223 -39.00459 -36.69583 -36.26447 -34.78967 -34.18501 -31.91057 -28.73431 -28.09674 -27.25179 -25.06044 -23.22777 -22.46771 -21.92538 -21.35221 -20.79448 -18.59068 -18.01764 -17.50082 -16.92824 -16.74219 -16.45355 -15.89288 -15.62380 -15.13122 -14.97150 -14.44744 -14.26135 -13.98065 -13.73811 -13.62928 -13.40904 -13.05299 -12.80722 -12.76628 -12.53443 -12.41271 -12.25793 -12.13389 -11.91032 -11.72477 -11.65648 -11.55812 -11.26573 -11.19757 -11.02308 -10.91118 -10.47665 -9.96374 -9.56766 -8.12946 -6.23300 1.42097 1.44860 1.52371 1.58050 2.15950 2.45324 2.99608 3.20015 3.53235 3.61090 3.85611 3.90743 4.03572 4.13542 4.14968 4.16937 4.29838 4.34660 4.46111 4.69068 4.74238 4.77995 4.80173 4.81536 4.94907 4.99193 5.02618 5.08416 5.22925 5.25705 5.26715 5.34314 5.40474 5.42101 5.57417 5.59364 5.85493 5.99542 6.12845 6.31356 6.50287 6.58838 6.95277 7.24089 7.44768 8.98106 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.004185 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.226238 B = 6689.269222 C = 7560.202310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.139 4.139 4 C 0.177 3.823 5 H 0.060 0.940 6 N -0.708 5.708 7 C 0.493 3.507 8 O -0.575 6.575 9 C 0.085 3.915 10 H 0.106 0.894 11 N -0.819 5.819 12 C -0.080 4.080 13 C 0.040 3.960 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.265 1.265 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.201 4.201 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.411 0.589 33 H 0.344 0.656 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.004 0.996 38 H -0.007 1.007 39 H 0.262 0.738 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.094 0.906 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.927 17.944 5.862 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.197 4.197 4 C 0.073 3.927 5 H 0.079 0.921 6 N -0.359 5.359 7 C 0.279 3.721 8 O -0.455 6.455 9 C -0.031 4.031 10 H 0.124 0.876 11 N -0.348 5.348 12 C -0.118 4.118 13 C 0.002 3.998 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.783 3.217 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.176 4.176 23 C -0.198 4.198 24 C -0.238 4.238 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.012 0.988 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.112 0.888 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.700 17.500 5.417 22.291 hybrid contribution -0.592 0.217 -0.104 0.639 sum 12.107 17.717 5.313 22.107 Atomic orbital electron populations 1.21866 0.95052 1.01865 1.02004 1.21324 0.95772 0.97446 0.96543 1.21755 1.01804 0.93993 1.02167 1.20649 0.91203 0.81670 0.99191 0.92136 1.46114 1.66003 1.14559 1.09204 1.22181 0.76208 0.89917 0.83839 1.90573 1.51948 1.70224 1.32752 1.21610 0.97459 0.88484 0.95505 0.87608 1.58966 1.16296 1.56015 1.03495 1.21365 0.90887 0.99114 1.00466 1.18819 0.93757 0.91617 0.95560 1.21703 0.94097 0.92594 1.49844 0.92667 1.25891 1.03282 0.95300 0.95054 1.70095 1.37473 0.98025 1.51413 0.85605 0.79885 0.77131 0.79032 1.19674 1.20923 1.19021 1.22685 0.93899 1.05770 0.95227 1.22938 1.02490 0.93068 1.01307 1.23204 1.02507 0.96341 1.01790 0.93158 0.93802 0.91028 0.89147 0.91224 0.91407 0.93280 0.75326 0.84226 0.84153 0.91527 0.94138 0.97719 0.98813 0.92934 0.86205 0.89869 0.87043 0.88805 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.04 71.98 0.65 -2.02 16 2 C -0.09 -1.42 2.54 -10.79 -0.03 -1.44 16 3 C -0.14 -1.79 8.95 71.98 0.64 -1.15 16 4 C 0.18 3.64 1.85 44.99 0.08 3.73 16 5 H 0.06 1.59 7.33 -2.39 -0.02 1.57 16 6 N -0.71 -16.37 4.37 -442.55 -1.93 -18.31 16 7 C 0.49 14.72 6.40 87.66 0.56 15.29 16 8 O -0.57 -20.04 13.28 -3.02 -0.04 -20.08 16 9 C 0.09 2.81 3.15 44.17 0.14 2.95 16 10 H 0.11 3.28 8.14 -2.38 -0.02 3.26 16 11 N -0.82 -27.90 8.44 -171.80 -1.45 -29.35 16 12 C -0.08 -3.22 4.78 30.59 0.15 -3.07 16 13 C 0.04 2.07 4.86 29.85 0.15 2.21 16 14 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 15 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 18 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.16 -2.89 4.10 -10.79 -0.04 -2.94 16 23 C -0.16 -2.94 10.18 30.62 0.31 -2.62 16 24 C -0.20 -4.51 9.74 30.62 0.30 -4.22 16 25 H 0.05 1.00 7.45 -2.39 -0.02 0.98 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.78 7.21 -2.39 -0.02 0.77 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.41 8.03 8.39 -92.71 -0.78 7.25 16 33 H 0.34 12.05 8.58 -89.69 -0.77 11.28 16 34 H 0.35 10.15 9.06 -89.70 -0.81 9.34 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.70 16 37 H 0.00 0.25 7.75 -2.38 -0.02 0.23 16 38 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.12 1.81 8.11 -2.39 -0.02 1.79 16 41 H 0.08 1.69 8.05 -2.39 -0.02 1.67 16 42 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.09 2.59 5.02 -2.38 -0.01 2.58 16 Total: -1.00 -67.44 352.94 1.12 -66.32 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -1.37 Total: 34.95 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 3.60 Total: -23.43 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.10 Total: -104.26 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -67.44 1.12 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595260010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.607 kcal (2) G-P(sol) polarization free energy of solvation -67.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds