Wall clock time and date at job start Mon Mar 30 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47078 * 2 1 4 4 H 1.09005 * 109.47250 * 54.99806 * 3 2 1 5 5 C 1.53000 * 109.47256 * 174.99854 * 3 2 1 6 6 N 1.46903 * 109.46945 * 175.00077 * 5 3 2 7 7 C 1.48526 * 111.00231 * 52.60628 * 6 5 3 8 8 C 1.54931 * 103.23173 * 159.71909 * 7 6 5 9 9 C 1.54597 * 102.91929 * 322.58805 * 8 7 6 10 10 C 1.47907 * 110.99827 * 170.00095 * 6 5 3 11 11 N 1.46500 * 109.47395 * 295.00028 * 3 2 1 12 12 C 1.34777 * 120.00084 * 84.99346 * 11 3 2 13 13 O 1.21283 * 119.99665 * 0.02562 * 12 11 3 14 14 C 1.50697 * 120.00075 * 180.02562 * 12 11 3 15 15 H 1.08998 * 109.46862 * 60.01098 * 14 12 11 16 16 C 1.52997 * 109.47466 * 300.00543 * 14 12 11 17 17 C 1.50706 * 109.47178 * 180.02562 * 14 12 11 18 18 H 1.07998 * 119.99629 * 0.02562 * 17 14 12 19 19 C 1.37875 * 119.99955 * 179.97438 * 17 14 12 20 20 N 1.31510 * 120.00308 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 119.99908 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46848 * 60.00326 * 21 19 17 23 23 H 1.48500 * 109.47035 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47237 * 300.00475 * 21 19 17 25 25 H 1.09007 * 109.46869 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47501 * 299.99869 * 1 2 3 27 27 H 1.09001 * 109.46772 * 60.00021 * 1 2 3 28 28 H 1.09001 * 109.47183 * 240.00072 * 2 1 3 29 29 H 1.08997 * 109.47488 * 120.00008 * 2 1 3 30 30 H 1.08995 * 109.47413 * 295.00147 * 5 3 2 31 31 H 1.08996 * 109.47031 * 55.00525 * 5 3 2 32 32 H 1.09000 * 110.66748 * 278.15580 * 7 6 5 33 33 H 1.09003 * 110.67154 * 41.28199 * 7 6 5 34 34 H 1.08999 * 110.72904 * 204.22978 * 8 7 6 35 35 H 1.08995 * 110.72622 * 80.94272 * 8 7 6 36 36 H 1.09005 * 110.30944 * 263.04004 * 9 8 7 37 37 H 1.08995 * 110.31482 * 140.87309 * 9 8 7 38 38 H 1.09004 * 109.91388 * 333.50723 * 10 6 5 39 39 H 1.08996 * 109.91543 * 94.60417 * 10 6 5 40 40 H 0.96996 * 120.00280 * 265.00479 * 11 3 2 41 41 H 1.09002 * 109.47153 * 59.99773 * 16 14 12 42 42 H 1.09001 * 109.46832 * 299.99964 * 16 14 12 43 43 H 1.09004 * 109.47261 * 179.97438 * 16 14 12 44 44 H 0.96998 * 120.00365 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1258 6 7 4.0643 2.8207 0.0057 7 6 3.3663 3.7250 0.9549 8 6 4.3333 4.9298 1.0730 9 6 5.7261 4.2599 1.0361 10 6 5.4989 2.8964 0.3575 11 7 1.6524 2.0976 -1.2518 12 6 0.4351 2.6644 -1.3670 13 8 -0.3393 2.6325 -0.4341 14 6 0.0362 3.3377 -2.6548 15 1 0.0672 2.6130 -3.4684 16 6 1.0066 4.4821 -2.9539 17 6 -1.3613 3.8862 -2.5231 18 1 -1.9059 3.7601 -1.5990 19 6 -1.9441 4.5497 -3.5819 20 7 -1.2807 4.7036 -4.7069 21 14 -3.6760 5.2302 -3.4183 22 1 -3.7173 6.2174 -2.3097 23 1 -4.0691 5.8935 -4.6874 24 1 -4.6187 4.1201 -3.1279 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.8499 1.0378 1.0960 31 1 3.9954 0.8313 -0.6659 32 1 2.4055 4.0413 0.5489 33 1 3.2355 3.2404 1.9225 34 1 4.1825 5.4544 2.0164 35 1 4.2092 5.6082 0.2290 36 1 6.1056 4.1201 2.0483 37 1 6.4205 4.8627 0.4509 38 1 5.7552 2.0915 1.0464 39 1 6.1068 2.8211 -0.5440 40 1 2.2718 2.1232 -1.9978 41 1 2.0176 4.0857 -3.0491 42 1 0.9756 5.2068 -2.1403 43 1 0.7184 4.9688 -3.8857 44 1 -1.6908 5.1701 -5.4519 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597258657.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:04 Heat of formation + Delta-G solvation = -48.129036 kcal Electronic energy + Delta-G solvation = -21941.545857 eV Core-core repulsion = 18893.162330 eV Total energy + Delta-G solvation = -3048.383528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.60904 -38.35281 -35.50945 -33.60400 -31.84473 -31.78580 -29.99250 -28.90059 -27.33458 -25.01817 -23.41845 -22.55123 -21.33143 -20.76520 -19.93212 -19.23088 -16.30237 -16.21800 -15.89130 -15.64778 -15.51203 -14.55975 -14.13701 -14.12209 -13.61694 -13.35299 -13.21626 -12.67468 -12.52786 -12.28317 -12.13565 -11.98870 -11.49403 -11.41104 -11.17961 -11.16917 -10.94310 -10.85978 -10.68111 -10.65435 -10.59843 -10.49986 -10.44423 -10.10018 -9.86318 -8.87184 -8.49048 -8.38874 -8.21237 -8.13033 -5.94476 -3.97084 3.40755 3.43061 3.48580 3.84036 3.94494 4.16507 4.54612 4.56269 4.66830 4.88701 4.99848 5.24281 5.25820 5.38470 5.41444 5.44190 5.47379 5.61107 5.63490 5.72028 5.75711 5.80561 5.97805 6.02938 6.14255 6.15962 6.22139 6.28231 6.40772 6.58017 6.78630 6.88847 6.89574 6.99819 7.00918 7.08263 7.35221 7.61175 7.87770 8.10025 8.30239 8.63995 9.11548 9.43844 9.68285 11.12975 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.005517 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.967000 B = 5074.378052 C = 5878.277825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.145 3.855 4 H 0.081 0.919 5 C 0.040 3.960 6 N -0.508 5.508 7 C 0.036 3.964 8 C -0.124 4.124 9 C -0.130 4.130 10 C 0.035 3.965 11 N -0.727 5.727 12 C 0.521 3.479 13 O -0.548 6.548 14 C 0.029 3.971 15 H 0.048 0.952 16 C -0.128 4.128 17 C -0.497 4.497 18 H 0.072 0.928 19 C 0.057 3.943 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.038 0.962 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.015 0.985 42 H 0.028 0.972 43 H 0.089 0.911 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.206 -5.168 9.240 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.039 3.961 4 H 0.099 0.901 5 C -0.089 4.089 6 N -0.232 5.232 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.168 4.168 10 C -0.093 4.093 11 N -0.380 5.380 12 C 0.311 3.689 13 O -0.424 6.424 14 C 0.008 3.992 15 H 0.066 0.934 16 C -0.186 4.186 17 C -0.536 4.536 18 H 0.091 0.909 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.203 1.203 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.232 0.768 41 H 0.034 0.966 42 H 0.047 0.953 43 H 0.108 0.892 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.519 -4.954 9.197 17.084 hybrid contribution -0.382 0.014 0.517 0.643 sum 13.137 -4.940 9.714 17.069 Atomic orbital electron populations 1.21787 0.94418 0.99942 1.03975 1.21914 0.97621 0.96213 1.01179 1.20896 0.91989 0.93250 0.89961 0.90077 1.22621 0.95398 0.90339 1.00555 1.64776 1.02274 1.07064 1.49107 1.23243 0.98899 0.92966 0.94069 1.22480 0.93932 0.97650 1.02165 1.22382 0.98008 0.96173 1.00243 1.22880 0.90485 0.96649 0.99277 1.46128 1.17689 1.59066 1.15149 1.21804 0.79534 0.76029 0.91542 1.90522 1.51400 1.58968 1.41549 1.18836 0.96611 0.94489 0.89240 0.93432 1.21688 0.94699 0.98951 1.03310 1.21115 0.97859 1.34649 0.99931 0.90948 1.24939 0.97940 0.96192 0.95209 1.69870 1.37162 1.43203 1.03456 0.86554 0.84642 0.79193 0.76987 1.20306 1.21480 1.20302 0.94280 0.92469 0.91283 0.92113 0.92314 0.93978 0.90270 0.89179 0.94194 0.91316 0.90483 0.91896 0.91126 0.94191 0.90452 0.76801 0.96642 0.95283 0.89242 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.51 37.16 0.32 -2.07 16 2 C -0.13 -1.78 5.61 -26.73 -0.15 -1.93 16 3 C 0.15 2.13 1.75 -67.93 -0.12 2.01 16 4 H 0.08 1.37 6.52 -51.93 -0.34 1.03 16 5 C 0.04 0.47 4.59 -3.82 -0.02 0.45 16 6 N -0.51 -6.40 5.12 -230.46 -1.18 -7.58 16 7 C 0.04 0.47 5.13 -1.91 -0.01 0.46 16 8 C -0.12 -1.40 7.06 -24.87 -0.18 -1.57 16 9 C -0.13 -1.24 6.93 -25.38 -0.18 -1.41 16 10 C 0.04 0.36 6.70 -2.75 -0.02 0.34 16 11 N -0.73 -12.59 4.65 -53.80 -0.25 -12.84 16 12 C 0.52 11.60 5.72 -10.99 -0.06 11.54 16 13 O -0.55 -13.64 12.60 5.55 0.07 -13.57 16 14 C 0.03 0.73 2.64 -92.92 -0.25 0.49 16 15 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.13 -3.02 8.86 37.16 0.33 -2.69 16 17 C -0.50 -14.18 8.37 -34.44 -0.29 -14.47 16 18 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 20 N -0.90 -25.56 11.32 55.43 0.63 -24.93 16 21 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 27 H 0.07 1.38 5.65 -51.93 -0.29 1.09 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.45 7.81 -51.93 -0.41 0.05 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 33 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.38 7.57 -51.93 -0.39 -0.02 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.40 6.46 8.02 -40.82 -0.33 6.14 16 41 H 0.01 0.30 7.56 -51.93 -0.39 -0.09 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -29.99 339.14 -9.18 -39.18 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.83 Total: 4.86 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.71 Total: -7.33 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.80 Total: -45.36 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.99 -9.18 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597258657.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.952 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds