Wall clock time and date at job start Mon Mar 30 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47292 * 2 1 4 4 H 1.09008 * 109.47140 * 55.00495 * 3 2 1 5 5 C 1.52998 * 109.47196 * 174.99857 * 3 2 1 6 6 N 1.46898 * 109.47134 * 175.00337 * 5 3 2 7 7 C 1.48530 * 111.00537 * 52.60640 * 6 5 3 8 8 C 1.54930 * 103.23412 * 159.72202 * 7 6 5 9 9 C 1.54601 * 102.92074 * 322.58446 * 8 7 6 10 10 C 1.47904 * 111.00069 * 170.00472 * 6 5 3 11 11 N 1.46502 * 109.47576 * 295.00236 * 3 2 1 12 12 C 1.34771 * 119.99760 * 84.99266 * 11 3 2 13 13 O 1.21283 * 120.00408 * 0.02562 * 12 11 3 14 14 C 1.50703 * 119.99955 * 180.02562 * 12 11 3 15 15 H 1.09002 * 109.46892 * 300.00677 * 14 12 11 16 16 C 1.53000 * 109.46726 * 60.00400 * 14 12 11 17 17 C 1.50695 * 109.47513 * 180.02562 * 14 12 11 18 18 H 1.07999 * 119.99837 * 324.96543 * 17 14 12 19 19 C 1.37874 * 120.00380 * 144.95795 * 17 14 12 20 20 N 1.31514 * 120.00472 * 180.13569 * 19 17 14 21 21 Si 1.86808 * 119.99711 * 0.14077 * 19 17 14 22 22 H 1.48490 * 109.47069 * 267.55805 * 21 19 17 23 23 H 1.48496 * 109.47011 * 27.56024 * 21 19 17 24 24 H 1.48503 * 109.46544 * 147.55996 * 21 19 17 25 25 H 1.09007 * 109.47029 * 299.99964 * 1 2 3 26 26 H 1.09003 * 109.47316 * 59.99593 * 1 2 3 27 27 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47309 * 240.00431 * 2 1 3 29 29 H 1.09003 * 109.47316 * 120.00407 * 2 1 3 30 30 H 1.09001 * 109.47479 * 295.00013 * 5 3 2 31 31 H 1.09001 * 109.47379 * 55.00525 * 5 3 2 32 32 H 1.09009 * 110.66332 * 278.16002 * 7 6 5 33 33 H 1.09006 * 110.66858 * 41.28223 * 7 6 5 34 34 H 1.08998 * 110.72989 * 204.22996 * 8 7 6 35 35 H 1.08999 * 110.72722 * 80.94351 * 8 7 6 36 36 H 1.08998 * 110.31182 * 263.04097 * 9 8 7 37 37 H 1.09003 * 110.30752 * 140.86830 * 9 8 7 38 38 H 1.09000 * 109.91466 * 333.50078 * 10 6 5 39 39 H 1.08992 * 109.91853 * 94.60435 * 10 6 5 40 40 H 0.96998 * 119.99759 * 265.00265 * 11 3 2 41 41 H 1.09003 * 109.47263 * 294.15786 * 16 14 12 42 42 H 1.08995 * 109.47247 * 54.15655 * 16 14 12 43 43 H 1.09005 * 109.46630 * 174.15887 * 16 14 12 44 44 H 0.97000 * 120.00440 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0644 2.8205 0.0057 7 6 3.3665 3.7249 0.9550 8 6 4.3336 4.9296 1.0731 9 6 5.7264 4.2597 1.0363 10 6 5.4990 2.8961 0.3575 11 7 1.6525 2.0976 -1.2518 12 6 0.4352 2.6644 -1.3668 13 8 -0.3393 2.6326 -0.4340 14 6 0.0363 3.3378 -2.6547 15 1 0.7277 4.1531 -2.8677 16 6 0.0798 2.3206 -3.7967 17 6 -1.3611 3.8863 -2.5229 18 1 -2.0973 3.3540 -1.9390 19 6 -1.6998 5.0678 -3.1477 20 7 -2.9186 5.5479 -3.0305 21 14 -0.4274 5.9867 -4.1608 22 1 0.2600 6.9858 -3.3040 23 1 0.5689 5.0240 -4.6953 24 1 -1.0998 6.6806 -5.2885 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8499 1.0376 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 2.4056 4.0413 0.5490 33 1 3.2357 3.2403 1.9226 34 1 4.1828 5.4542 2.0165 35 1 4.2094 5.6081 0.2291 36 1 6.1059 4.1199 2.0484 37 1 6.4208 4.8625 0.4509 38 1 5.7553 2.0912 1.0463 39 1 6.1069 2.8209 -0.5440 40 1 2.2719 2.1232 -1.9977 41 1 1.1092 2.0015 -3.9601 42 1 -0.5315 1.4564 -3.5371 43 1 -0.3072 2.7793 -4.7067 44 1 -3.1567 6.3793 -3.4698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597258660.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:09 Heat of formation + Delta-G solvation = -69.972287 kcal Electronic energy + Delta-G solvation = -21974.671767 eV Core-core repulsion = 18925.341045 eV Total energy + Delta-G solvation = -3049.330722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01717 -39.63862 -36.88518 -35.53659 -33.72720 -32.85033 -32.42420 -29.81712 -28.53738 -27.16744 -24.71866 -24.14589 -22.42279 -21.61129 -21.12865 -20.85180 -19.07677 -17.66535 -17.24907 -16.91937 -16.72312 -16.26495 -15.92904 -15.11766 -14.85124 -14.66534 -14.51617 -14.44492 -14.25563 -13.73945 -13.50049 -13.38619 -13.02842 -12.94916 -12.94453 -12.57997 -12.46267 -12.29401 -12.12602 -12.08238 -11.93994 -11.75188 -11.72405 -11.61697 -11.43265 -11.15209 -10.74098 -10.23577 -9.70292 -9.34192 -8.24478 -6.29801 1.36843 1.38112 1.49970 2.09340 2.37199 2.52133 3.03651 3.15496 3.61287 3.77619 3.96480 4.10844 4.13619 4.23516 4.33577 4.35373 4.45429 4.47440 4.58063 4.62046 4.67063 4.76192 4.79321 4.86928 4.91850 4.96632 4.97057 5.02831 5.03595 5.08864 5.16864 5.20455 5.28919 5.32765 5.49769 5.56653 5.63167 5.81366 5.95112 6.13863 6.30755 6.74456 7.01639 7.31977 7.73690 8.93667 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.006526 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.072877 B = 4289.486948 C = 5315.951801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.144 3.856 4 H 0.053 0.947 5 C 0.048 3.952 6 N -0.525 5.525 7 C 0.036 3.964 8 C -0.126 4.126 9 C -0.124 4.124 10 C 0.035 3.965 11 N -0.706 5.706 12 C 0.523 3.477 13 O -0.577 6.577 14 C -0.011 4.011 15 H 0.064 0.936 16 C -0.125 4.125 17 C -0.498 4.498 18 H 0.021 0.979 19 C 0.004 3.996 20 N -0.955 5.955 21 Si 0.945 3.055 22 H -0.274 1.274 23 H -0.223 1.223 24 H -0.285 1.285 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.409 0.591 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.867 -8.524 5.086 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.038 3.962 4 H 0.071 0.929 5 C -0.080 4.080 6 N -0.249 5.249 7 C -0.092 4.092 8 C -0.164 4.164 9 C -0.162 4.162 10 C -0.092 4.092 11 N -0.359 5.359 12 C 0.311 3.689 13 O -0.456 6.456 14 C -0.032 4.032 15 H 0.082 0.918 16 C -0.183 4.183 17 C -0.536 4.536 18 H 0.040 0.960 19 C -0.192 4.192 20 N -0.595 5.595 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.146 1.146 24 H -0.211 1.211 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.245 0.755 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 22.128 -8.279 5.168 24.185 hybrid contribution -0.435 0.589 0.334 0.805 sum 21.693 -7.690 5.502 23.665 Atomic orbital electron populations 1.21721 0.97140 1.00158 1.00913 1.21869 0.94890 0.95597 1.03641 1.21068 0.94436 0.93315 0.87339 0.92896 1.22589 0.92427 0.90434 1.02571 1.64753 1.03752 1.07295 1.49150 1.23110 0.97627 0.94299 0.94194 1.22480 0.94960 0.96877 1.02086 1.22383 0.96620 0.95791 1.01397 1.22948 0.88672 0.97379 1.00188 1.45842 1.15715 1.57724 1.16624 1.21150 0.81008 0.76866 0.89916 1.90572 1.52964 1.59895 1.42151 1.19313 0.96089 0.96323 0.91512 0.91846 1.21803 1.00994 0.97944 0.97526 1.20888 0.95537 1.07158 1.30037 0.96014 1.26050 0.97656 0.97832 0.97683 1.70083 1.21478 1.21911 1.46054 0.85782 0.79706 0.79324 0.78488 1.19948 1.14557 1.21051 0.94961 0.95064 0.92329 0.90044 0.89260 0.91949 0.87952 0.93343 0.93811 0.90501 0.91884 0.90388 0.90172 0.92634 0.89486 0.75482 0.90716 0.94327 0.93118 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.52 71.98 0.61 -4.03 16 2 C -0.12 -2.88 5.61 30.59 0.17 -2.71 16 3 C 0.14 3.83 1.74 44.99 0.08 3.91 16 4 H 0.05 1.77 6.52 -2.38 -0.02 1.75 16 5 C 0.05 0.91 4.58 86.30 0.40 1.30 16 6 N -0.52 -11.19 5.12 -883.01 -4.52 -15.71 16 7 C 0.04 0.90 5.13 86.65 0.44 1.34 16 8 C -0.13 -2.61 7.06 31.80 0.22 -2.39 16 9 C -0.12 -1.88 6.93 31.48 0.22 -1.67 16 10 C 0.04 0.56 6.70 86.45 0.58 1.13 16 11 N -0.71 -22.28 4.66 -442.53 -2.06 -24.34 16 12 C 0.52 22.96 5.72 87.66 0.50 23.46 16 13 O -0.58 -30.70 12.91 -3.04 -0.04 -30.74 16 14 C -0.01 -0.49 2.19 -12.29 -0.03 -0.52 16 15 H 0.06 2.82 5.37 -2.39 -0.01 2.81 16 16 C -0.12 -4.82 8.94 71.98 0.64 -4.17 16 17 C -0.50 -30.12 8.36 25.60 0.21 -29.90 16 18 H 0.02 1.54 7.61 -2.91 -0.02 1.51 16 19 C 0.00 0.22 5.47 84.65 0.46 0.68 16 20 N -0.95 -62.45 13.96 21.45 0.30 -62.15 16 21 Si 0.94 43.88 26.85 68.60 1.84 45.72 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.22 -8.91 6.64 99.48 0.66 -8.25 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H 0.03 1.18 7.85 -2.38 -0.02 1.16 16 26 H 0.03 1.24 5.65 -2.39 -0.01 1.22 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.00 7.81 -2.39 -0.02 0.98 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.62 7.76 -2.38 -0.02 1.60 16 33 H 0.04 1.06 8.00 -2.38 -0.02 1.04 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 0.73 7.57 -2.39 -0.02 0.71 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 10.84 8.14 -92.71 -0.75 10.08 16 41 H 0.07 2.17 7.73 -2.39 -0.02 2.15 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 1.99 7.93 -2.38 -0.02 1.97 16 44 H 0.27 16.10 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -77.03 338.97 0.20 -76.83 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.16 Total: 23.95 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 4.52 Total: -13.56 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -6.28 Total: -102.21 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.04 Total: -30.74 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.84 Total: 45.72 kcal Total: -77.03 0.20 -76.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597258660.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.858 kcal (2) G-P(sol) polarization free energy of solvation -77.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds