Wall clock time and date at job start Mon Mar 30 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47135 * 2 1 4 4 H 1.09000 * 109.40332 * 64.10211 * 3 2 1 5 5 C 1.54771 * 109.43760 * 183.99529 * 3 2 1 6 6 N 1.41443 * 109.98996 * 189.80596 * 5 3 2 7 7 C 1.46898 * 111.00256 * 168.31413 * 6 5 3 8 8 C 1.46198 * 116.34228 * 296.51878 * 6 5 3 9 9 C 1.51274 * 109.10227 * 87.02635 * 8 6 5 10 10 C 1.53457 * 109.48600 * 267.49722 * 9 8 6 11 11 N 1.44886 * 109.43640 * 304.21143 * 3 2 1 12 12 C 1.34779 * 118.74363 * 330.18533 * 11 3 2 13 13 O 1.21279 * 120.00382 * 353.69592 * 12 11 3 14 14 C 1.50698 * 119.99691 * 173.69997 * 12 11 3 15 15 H 1.09001 * 109.47325 * 60.00218 * 14 12 11 16 16 C 1.52996 * 109.47087 * 299.99711 * 14 12 11 17 17 C 1.50701 * 109.46903 * 179.97438 * 14 12 11 18 18 H 1.08003 * 119.99947 * 26.35990 * 17 14 12 19 19 C 1.37881 * 119.99930 * 206.62846 * 17 14 12 20 20 N 1.31516 * 119.99976 * 184.82676 * 19 17 14 21 21 Si 1.86797 * 120.00046 * 4.82405 * 19 17 14 22 22 H 1.48502 * 109.46733 * 94.28814 * 21 19 17 23 23 H 1.48496 * 109.47147 * 214.28619 * 21 19 17 24 24 H 1.48493 * 109.47284 * 334.29070 * 21 19 17 25 25 H 1.09005 * 109.46654 * 59.99852 * 1 2 3 26 26 H 1.08996 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47299 * 300.00774 * 1 2 3 28 28 H 1.08994 * 109.47203 * 239.99735 * 2 1 3 29 29 H 1.08998 * 109.46622 * 119.99757 * 2 1 3 30 30 H 1.09000 * 109.38724 * 309.96946 * 5 3 2 31 31 H 1.09008 * 109.38216 * 69.74908 * 5 3 2 32 32 H 1.09003 * 109.46694 * 60.00292 * 7 6 5 33 33 H 1.08999 * 109.47389 * 179.97438 * 7 6 5 34 34 H 1.08994 * 109.47052 * 300.00435 * 7 6 5 35 35 H 1.09004 * 109.52973 * 206.91032 * 8 6 5 36 36 H 1.09001 * 109.53488 * 327.05990 * 8 6 5 37 37 H 1.09000 * 109.44546 * 27.63611 * 9 8 6 38 38 H 1.09001 * 109.44566 * 147.57828 * 9 8 6 39 39 H 1.08995 * 109.10408 * 279.72322 * 10 9 8 40 40 H 1.09001 * 108.92355 * 160.77478 * 10 9 8 41 41 H 1.09003 * 109.47141 * 66.85640 * 16 14 12 42 42 H 1.09001 * 109.47543 * 186.85670 * 16 14 12 43 43 H 1.08997 * 109.47584 * 306.85641 * 16 14 12 44 44 H 0.96995 * 120.00084 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7374 1.9336 0.9248 5 6 3.5844 1.4427 -0.1017 6 7 4.0836 2.7470 0.1227 7 6 5.5408 2.7286 0.3068 8 6 3.6908 3.7678 -0.8474 9 6 2.3676 4.3679 -0.4264 10 6 1.2211 3.6067 -1.1055 11 7 1.4765 2.1531 -1.1299 12 6 1.1794 1.4614 -2.2478 13 8 1.4887 0.2922 -2.3377 14 6 0.4628 2.1409 -3.3861 15 1 1.0625 2.9772 -3.7455 16 6 -0.8928 2.6573 -2.8997 17 6 0.2528 1.1558 -4.5070 18 1 0.1937 0.0988 -4.2930 19 6 0.1417 1.6033 -5.8064 20 7 -0.1360 0.7553 -6.7725 21 14 0.3855 3.4142 -6.1946 22 1 1.7966 3.6493 -6.5931 23 1 -0.5153 3.8074 -7.3078 24 1 0.0691 4.2253 -4.9917 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.9963 0.7642 0.6453 31 1 3.8816 1.1094 -1.0961 32 1 6.0147 2.3220 -0.5866 33 1 5.8984 3.7441 0.4771 34 1 5.7907 2.1061 1.1659 35 1 4.4505 4.5487 -0.8824 36 1 3.5892 3.3138 -1.8332 37 1 2.2640 4.2947 0.6562 38 1 2.3332 5.4158 -0.7243 39 1 1.1104 3.9668 -2.1283 40 1 0.2975 3.7977 -0.5590 41 1 -0.7383 3.4573 -2.1756 42 1 -1.4615 3.0394 -3.7474 43 1 -1.4443 1.8432 -2.4295 44 1 -0.2145 1.0702 -7.6866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597604826.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:30 Heat of formation + Delta-G solvation = -30.545478 kcal Electronic energy + Delta-G solvation = -22940.073057 eV Core-core repulsion = 19892.452009 eV Total energy + Delta-G solvation = -3047.621047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84398 -39.12099 -36.30883 -36.15262 -34.79936 -33.19090 -31.94805 -29.72759 -27.57193 -27.07810 -25.99729 -24.59456 -23.05348 -22.23786 -21.53040 -19.50427 -19.04999 -17.79896 -17.08778 -16.68374 -16.59540 -16.38519 -15.98187 -15.35920 -15.25624 -14.79062 -14.46471 -14.24540 -14.00698 -13.96220 -13.51356 -13.24671 -13.10931 -13.02683 -12.93715 -12.79534 -12.55573 -12.35640 -12.29937 -12.15130 -11.92330 -11.83846 -11.69481 -11.63402 -11.46497 -11.15412 -10.74029 -9.64305 -9.42669 -9.18386 -8.26810 -6.32228 1.33436 1.35138 1.46897 1.96065 2.25374 2.34998 2.96182 3.08121 3.82401 3.84409 3.96820 4.13036 4.18417 4.27546 4.39562 4.40719 4.42599 4.54698 4.56943 4.62620 4.65515 4.75558 4.78527 4.81766 4.84340 4.90582 4.94251 5.00729 5.04084 5.10502 5.13453 5.16533 5.32217 5.38772 5.46596 5.55848 5.63253 6.04157 6.18792 6.26254 6.35630 6.63482 6.84275 7.29513 7.64997 8.91207 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020001 B = 0.007372 C = 0.006457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.596317 B = 3797.180293 C = 4335.593819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 C 0.159 3.841 4 H 0.103 0.897 5 C 0.072 3.928 6 N -0.564 5.564 7 C 0.033 3.967 8 C 0.065 3.935 9 C -0.120 4.120 10 C 0.096 3.904 11 N -0.608 5.608 12 C 0.521 3.479 13 O -0.564 6.564 14 C -0.007 4.007 15 H 0.061 0.939 16 C -0.132 4.132 17 C -0.504 4.504 18 H 0.024 0.976 19 C 0.005 3.995 20 N -0.953 5.953 21 Si 0.939 3.061 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.217 1.217 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.092 0.908 31 H -0.010 1.010 32 H 0.009 0.991 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.009 0.991 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.036 0.964 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 12.079 18.171 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.190 4.190 3 C 0.055 3.945 4 H 0.121 0.879 5 C -0.058 4.058 6 N -0.288 5.288 7 C -0.114 4.114 8 C -0.062 4.062 9 C -0.158 4.158 10 C -0.025 4.025 11 N -0.342 5.342 12 C 0.311 3.689 13 O -0.443 6.443 14 C -0.029 4.029 15 H 0.079 0.921 16 C -0.190 4.190 17 C -0.543 4.543 18 H 0.042 0.958 19 C -0.191 4.191 20 N -0.594 5.594 21 Si 0.761 3.239 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.139 1.139 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.008 0.992 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.028 0.972 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.649 11.591 18.360 22.707 hybrid contribution 0.346 -0.536 -1.887 1.992 sum 6.994 11.054 16.473 21.035 Atomic orbital electron populations 1.21618 0.96026 1.00761 1.00756 1.22218 0.96486 0.96648 1.03648 1.21143 0.91399 0.92668 0.89245 0.87891 1.21573 0.95717 0.90169 0.98340 1.58496 1.12574 1.07247 1.50441 1.22407 0.85623 1.03326 1.00083 1.21645 0.98638 0.93923 0.91989 1.21815 0.91981 0.99822 1.02185 1.22309 0.99562 0.78209 1.02454 1.47978 1.63794 1.09003 1.13410 1.21203 0.77589 0.86503 0.83560 1.90408 1.54665 1.18979 1.80214 1.19289 0.95204 0.96090 0.92274 0.92137 1.22027 0.96282 1.00027 1.00669 1.20947 1.48614 0.93357 0.91353 0.95804 1.26027 0.94212 1.03218 0.95637 1.70087 1.50629 1.37565 1.01098 0.85868 0.78362 0.79820 0.79820 1.20100 1.20869 1.13905 0.95231 0.93828 0.91484 0.89917 0.90437 0.88940 0.99230 0.97242 0.89653 0.90468 0.89159 0.97213 0.89260 0.87635 0.90468 0.89767 0.90126 0.93231 0.94507 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.31 71.98 0.67 -3.73 16 2 C -0.15 -4.92 4.87 30.60 0.15 -4.77 16 3 C 0.16 4.57 2.17 45.90 0.10 4.67 16 4 H 0.10 2.47 8.11 -2.39 -0.02 2.45 16 5 C 0.07 2.00 4.70 87.90 0.41 2.42 16 6 N -0.56 -12.80 4.09 -937.94 -3.84 -16.64 16 7 C 0.03 0.60 9.45 127.69 1.21 1.81 16 8 C 0.07 1.46 5.31 85.87 0.46 1.92 16 9 C -0.12 -2.16 5.78 30.18 0.17 -1.99 16 10 C 0.10 2.32 4.45 86.32 0.38 2.70 16 11 N -0.61 -19.66 1.82 -794.48 -1.45 -21.10 16 12 C 0.52 22.86 4.88 87.66 0.43 23.29 16 13 O -0.56 -29.48 11.48 -3.03 -0.03 -29.51 16 14 C -0.01 -0.32 1.33 -12.29 -0.02 -0.34 16 15 H 0.06 2.65 4.64 -2.39 -0.01 2.64 16 16 C -0.13 -5.12 8.36 71.98 0.60 -4.51 16 17 C -0.50 -30.30 8.50 25.60 0.22 -30.09 16 18 H 0.02 1.69 7.37 -2.91 -0.02 1.66 16 19 C 0.01 0.30 5.47 84.66 0.46 0.76 16 20 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 21 Si 0.94 42.72 26.43 68.60 1.81 44.53 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.22 -8.27 6.09 99.48 0.61 -7.66 16 25 H 0.03 1.14 5.38 -2.38 -0.01 1.13 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 3.47 5.17 -32.84 -0.17 3.30 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.09 2.22 7.92 -2.39 -0.02 2.20 16 31 H -0.01 -0.38 8.11 -2.38 -0.02 -0.40 16 32 H 0.01 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.08 1.22 7.75 -2.39 -0.02 1.20 16 34 H 0.08 1.22 8.05 -2.39 -0.02 1.20 16 35 H 0.09 1.60 7.47 -2.39 -0.02 1.58 16 36 H 0.01 0.28 7.32 -2.39 -0.02 0.27 16 37 H 0.09 1.48 7.98 -2.39 -0.02 1.46 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.08 2.02 5.29 -2.39 -0.01 2.00 16 40 H 0.08 1.69 7.47 -2.39 -0.02 1.67 16 41 H 0.08 2.35 5.14 -2.39 -0.01 2.34 16 42 H 0.05 1.95 7.15 -2.39 -0.02 1.93 16 43 H 0.04 1.48 7.77 -2.39 -0.02 1.46 16 44 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -76.18 319.79 2.75 -73.43 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.71 Total: 18.69 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.25 Total: -7.85 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -4.99 Total: -99.28 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.03 Total: -29.51 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 1.81 Total: 44.53 kcal Total: -76.18 2.75 -73.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604826.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.882 kcal (2) G-P(sol) polarization free energy of solvation -76.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds