Wall clock time and date at job start Mon Mar 30 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47380 * 2 1 4 4 H 1.09000 * 109.39957 * 64.10039 * 3 2 1 5 5 C 1.54775 * 109.43322 * 183.98801 * 3 2 1 6 6 N 1.41445 * 109.98383 * 189.80774 * 5 3 2 7 7 C 1.46900 * 111.00279 * 168.31449 * 6 5 3 8 8 C 1.46196 * 116.34584 * 296.52119 * 6 5 3 9 9 C 1.51075 * 109.09076 * 87.00835 * 8 6 5 10 10 C 1.53805 * 109.70295 * 267.57141 * 9 8 6 11 11 N 1.44876 * 109.43439 * 304.20591 * 3 2 1 12 12 C 1.34779 * 118.74868 * 330.20720 * 11 3 2 13 13 O 1.21278 * 119.99737 * 353.79226 * 12 11 3 14 14 C 1.50698 * 119.99869 * 173.79710 * 12 11 3 15 15 H 1.09002 * 109.47123 * 317.62725 * 14 12 11 16 16 C 1.52995 * 109.47758 * 77.63124 * 14 12 11 17 17 C 1.50704 * 109.46872 * 197.62871 * 14 12 11 18 18 H 1.08006 * 119.99995 * 0.02562 * 17 14 12 19 19 C 1.37874 * 119.99971 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00099 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00159 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.47004 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47216 * 120.00053 * 21 19 17 24 24 H 1.48499 * 109.47368 * 240.00485 * 21 19 17 25 25 H 1.08994 * 109.47738 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47172 * 300.00359 * 1 2 3 27 27 H 1.09003 * 109.47174 * 59.99687 * 1 2 3 28 28 H 1.09004 * 109.47172 * 239.99641 * 2 1 3 29 29 H 1.09003 * 109.47174 * 120.00313 * 2 1 3 30 30 H 1.09004 * 109.38603 * 309.96354 * 5 3 2 31 31 H 1.08998 * 109.38710 * 69.75352 * 5 3 2 32 32 H 1.09000 * 109.46819 * 60.00053 * 7 6 5 33 33 H 1.08997 * 109.47328 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47301 * 299.99892 * 7 6 5 35 35 H 1.09004 * 109.53728 * 206.91636 * 8 6 5 36 36 H 1.09004 * 109.52701 * 327.06345 * 8 6 5 37 37 H 1.08999 * 109.35663 * 147.53211 * 9 8 6 38 38 H 1.08995 * 109.45309 * 27.67223 * 9 8 6 39 39 H 1.08997 * 109.11506 * 279.62946 * 10 9 8 40 40 H 1.09003 * 109.10809 * 160.50744 * 10 9 8 41 41 H 1.09009 * 109.46912 * 305.76722 * 16 14 12 42 42 H 1.08999 * 109.47213 * 65.75905 * 16 14 12 43 43 H 1.08997 * 109.47831 * 185.76909 * 16 14 12 44 44 H 0.97005 * 120.00427 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7374 1.9335 0.9248 5 6 3.5845 1.4426 -0.1015 6 7 4.0836 2.7469 0.1230 7 6 5.5409 2.7284 0.3073 8 6 3.6910 3.7677 -0.8472 9 6 2.3693 4.3665 -0.4268 10 6 1.2166 3.6058 -1.1038 11 7 1.4766 2.1530 -1.1299 12 6 1.1791 1.4613 -2.2477 13 8 1.4865 0.2915 -2.3367 14 6 0.4646 2.1415 -3.3869 15 1 -0.3316 2.7722 -2.9916 16 6 1.4571 3.0036 -4.1695 17 6 -0.1269 1.1003 -4.3020 18 1 0.0015 0.0511 -4.0805 19 6 -0.8327 1.4873 -5.4214 20 7 -0.9894 2.7650 -5.6908 21 14 -1.5664 0.1969 -6.5554 22 1 -1.2513 -1.1573 -6.0336 23 1 -3.0397 0.3724 -6.6173 24 1 -0.9920 0.3495 -7.9162 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.9962 0.7641 0.6457 31 1 3.8817 1.1092 -1.0958 32 1 6.0149 2.3218 -0.5861 33 1 5.8983 3.7438 0.4785 34 1 5.7906 2.1060 1.1665 35 1 4.4507 4.5486 -0.8822 36 1 3.5895 3.3136 -1.8329 37 1 2.3365 5.4146 -0.7244 38 1 2.2657 4.2937 0.6558 39 1 1.1027 3.9664 -2.1260 40 1 0.2940 3.7934 -0.5544 41 1 1.9602 3.6887 -3.4870 42 1 2.1957 2.3619 -4.6499 43 1 0.9228 3.5744 -4.9289 44 1 -1.4856 3.0373 -6.4786 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597604828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:37 Heat of formation + Delta-G solvation = -12.135362 kcal Electronic energy + Delta-G solvation = -22869.037920 eV Core-core repulsion = 19822.215195 eV Total energy + Delta-G solvation = -3046.822725 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32363 -37.75001 -34.73561 -34.63928 -33.15800 -31.02321 -30.11776 -28.48117 -26.19834 -25.19676 -24.83829 -22.82450 -21.74424 -20.84069 -20.35184 -17.87908 -16.42730 -16.29025 -15.77886 -15.43174 -15.03025 -14.63848 -14.63462 -14.10704 -13.43839 -13.28586 -12.96571 -12.82562 -12.54712 -12.36983 -12.13701 -11.78528 -11.68285 -11.47279 -11.19881 -11.02624 -10.99768 -10.90876 -10.68636 -10.59809 -10.45577 -10.36025 -10.22330 -10.12712 -9.89698 -8.95074 -8.43279 -8.12862 -7.92382 -7.83378 -6.02547 -4.04633 3.32214 3.39934 3.47587 3.71441 3.75208 4.02131 4.47463 4.97757 5.02960 5.23729 5.31037 5.31590 5.38319 5.45960 5.52685 5.61540 5.76127 5.77699 5.81132 5.85592 5.89070 6.01216 6.06927 6.15767 6.20517 6.27198 6.33874 6.36885 6.48309 6.65051 6.80894 6.85045 6.93031 6.98968 7.20558 7.41599 7.49686 7.52450 7.75939 8.01237 8.13926 8.42824 9.02907 9.34760 9.60620 11.05511 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.006385 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.854703 B = 4384.050803 C = 4907.386904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.154 4.154 3 C 0.158 3.842 4 H 0.074 0.926 5 C 0.064 3.936 6 N -0.568 5.568 7 C 0.035 3.965 8 C 0.071 3.929 9 C -0.129 4.129 10 C 0.101 3.899 11 N -0.619 5.619 12 C 0.522 3.478 13 O -0.536 6.536 14 C 0.029 3.971 15 H 0.046 0.954 16 C -0.132 4.132 17 C -0.497 4.497 18 H 0.072 0.928 19 C 0.059 3.941 20 N -0.897 5.897 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.062 0.938 28 H 0.124 0.876 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.112 3.637 11.822 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.191 4.191 3 C 0.053 3.947 4 H 0.092 0.908 5 C -0.066 4.066 6 N -0.292 5.292 7 C -0.113 4.113 8 C -0.056 4.056 9 C -0.168 4.168 10 C -0.021 4.021 11 N -0.354 5.354 12 C 0.315 3.685 13 O -0.413 6.413 14 C 0.008 3.992 15 H 0.064 0.936 16 C -0.190 4.190 17 C -0.535 4.535 18 H 0.090 0.910 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.141 0.859 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.108 0.892 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.979 3.250 12.030 14.797 hybrid contribution -0.084 -0.688 -1.225 1.407 sum 7.895 2.562 10.805 13.625 Atomic orbital electron populations 1.21659 0.95758 1.00945 1.01224 1.22354 0.96736 0.95829 1.04195 1.20995 0.90903 0.93386 0.89422 0.90809 1.21690 0.96264 0.88701 0.99918 1.58369 1.11170 1.08430 1.51228 1.22302 0.87207 1.01730 1.00071 1.21494 0.96774 0.93474 0.93834 1.21816 0.94320 0.98947 1.01670 1.22113 0.96798 0.80042 1.03191 1.48039 1.65012 1.07888 1.14465 1.21868 0.77053 0.86753 0.82843 1.90313 1.53872 1.17399 1.79686 1.18891 0.93934 0.96017 0.90406 0.93624 1.21824 0.98154 0.98543 1.00453 1.21146 1.31921 0.93278 1.07174 0.91005 1.24933 0.96161 0.95410 0.97684 1.69885 1.41891 1.14368 1.27477 0.86441 0.78594 0.82078 0.80405 1.19607 1.21103 1.21092 0.93447 0.94439 0.91888 0.85853 0.93412 0.90804 0.95151 0.96002 0.91774 0.91844 0.91606 0.93427 0.90688 0.90736 0.88258 0.92613 0.96525 0.94826 0.89174 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.30 37.16 0.35 -2.08 16 2 C -0.15 -2.60 4.87 -26.73 -0.13 -2.73 16 3 C 0.16 2.54 2.17 -67.86 -0.15 2.39 16 4 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 5 C 0.06 0.96 4.70 -5.74 -0.03 0.94 16 6 N -0.57 -7.57 4.09 -247.93 -1.01 -8.58 16 7 C 0.03 0.38 9.45 60.06 0.57 0.95 16 8 C 0.07 0.96 5.31 -5.17 -0.03 0.93 16 9 C -0.13 -1.61 5.77 -27.28 -0.16 -1.77 16 10 C 0.10 1.57 5.46 -3.01 -0.02 1.55 16 11 N -0.62 -11.09 1.82 -164.84 -0.30 -11.39 16 12 C 0.52 11.61 4.73 -10.99 -0.05 11.55 16 13 O -0.54 -13.12 11.47 5.56 0.06 -13.06 16 14 C 0.03 0.70 1.78 -92.93 -0.17 0.54 16 15 H 0.05 1.16 7.37 -51.93 -0.38 0.78 16 16 C -0.13 -3.04 8.42 37.15 0.31 -2.73 16 17 C -0.50 -13.91 8.35 -34.44 -0.29 -14.20 16 18 H 0.07 2.13 6.90 -52.48 -0.36 1.77 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -25.01 11.38 55.43 0.63 -24.38 16 21 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.30 5.74 -51.93 -0.30 1.01 16 28 H 0.12 2.48 5.17 -53.87 -0.28 2.20 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.61 7.75 -51.93 -0.40 0.20 16 34 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 35 H 0.07 0.76 7.47 -51.93 -0.39 0.37 16 36 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 39 H 0.10 1.68 4.04 -51.93 -0.21 1.47 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.32 5.75 -51.92 -0.30 0.02 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 2.25 6.25 -51.93 -0.32 1.93 16 44 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -29.30 324.30 -8.13 -37.43 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.50 Total: 1.47 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.12 Total: -3.13 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.68 Total: -44.35 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.06 Total: -13.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.30 -8.13 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.294 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds