Wall clock time and date at job start Mon Mar 30 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09001 * 107.83664 * 299.85114 * 3 2 1 5 5 C 1.54006 * 107.85881 * 183.37122 * 3 2 1 6 6 N 1.48818 * 110.60746 * 196.56647 * 5 3 2 7 7 C 1.46908 * 110.99411 * 196.20027 * 6 5 3 8 8 C 1.43908 * 112.04963 * 320.92337 * 6 5 3 9 9 C 1.52470 * 105.41667 * 98.70538 * 8 6 5 10 10 C 1.46643 * 114.11490 * 269.64443 * 9 8 6 11 11 N 1.43654 * 108.14379 * 56.57550 * 3 2 1 12 12 C 1.34778 * 120.54924 * 30.87262 * 11 3 2 13 13 O 1.21281 * 120.00136 * 6.27574 * 12 11 3 14 14 C 1.50698 * 120.00046 * 186.26598 * 12 11 3 15 15 H 1.09007 * 109.47219 * 34.77507 * 14 12 11 16 16 C 1.53001 * 109.47482 * 274.77898 * 14 12 11 17 17 C 1.50698 * 109.47279 * 154.77531 * 14 12 11 18 18 H 1.07999 * 119.99981 * 0.27885 * 17 14 12 19 19 C 1.37873 * 120.00235 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99931 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 120.00405 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.46905 * 90.00220 * 21 19 17 23 23 H 1.48494 * 109.47168 * 210.00405 * 21 19 17 24 24 H 1.48502 * 109.46775 * 330.00571 * 21 19 17 25 25 H 1.08997 * 109.47187 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.46904 * 60.00115 * 1 2 3 27 27 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46981 * 240.00416 * 2 1 3 29 29 H 1.08997 * 109.47060 * 120.00376 * 2 1 3 30 30 H 1.08997 * 109.32743 * 76.23558 * 5 3 2 31 31 H 1.09004 * 109.20681 * 316.81681 * 5 3 2 32 32 H 1.09002 * 109.46761 * 181.35697 * 7 6 5 33 33 H 1.08998 * 109.47518 * 301.35810 * 7 6 5 34 34 H 1.08997 * 109.47165 * 61.35982 * 7 6 5 35 35 H 1.09000 * 110.24772 * 339.73482 * 8 6 5 36 36 H 1.08998 * 110.25200 * 217.68269 * 8 6 5 37 37 H 1.09009 * 108.55408 * 148.44560 * 9 8 6 38 38 H 1.08999 * 108.43690 * 30.76122 * 9 8 6 39 39 H 1.08997 * 109.95449 * 298.77276 * 10 9 8 40 40 H 1.09006 * 110.02460 * 177.54610 * 10 9 8 41 41 H 1.08996 * 109.47145 * 59.62636 * 16 14 12 42 42 H 1.08999 * 109.47375 * 179.63122 * 16 14 12 43 43 H 1.09006 * 109.46906 * 299.63406 * 16 14 12 44 44 H 0.97002 * 120.00118 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6643 1.9295 -0.9000 5 6 3.5770 1.4001 -0.0862 6 7 4.1600 2.7122 0.3050 7 6 5.5594 2.8171 -0.1297 8 6 3.3823 3.8178 -0.1888 9 6 2.5150 4.2596 0.9848 10 6 1.2119 3.5906 1.0520 11 7 1.4801 2.1149 1.1393 12 6 1.2051 1.4343 2.2697 13 8 1.5339 0.2714 2.3725 14 6 0.4894 2.1182 3.4058 15 1 -0.2312 2.8311 3.0048 16 6 1.5062 2.8571 4.2782 17 6 -0.2319 1.0890 4.2373 18 1 -0.1737 0.0436 3.9724 19 6 -0.9617 1.4813 5.3393 20 7 -1.0289 2.7538 5.6645 21 14 -1.8564 0.2055 6.3697 22 1 -0.9573 -0.2793 7.4475 23 1 -3.0674 0.8174 6.9731 24 1 -2.2556 -0.9357 5.5073 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8747 1.1652 -1.1081 31 1 3.9525 0.6263 0.5834 32 1 5.9682 3.7756 0.1899 33 1 6.1395 2.0083 0.3145 34 1 5.6086 2.7452 -1.2162 35 1 2.7558 3.4964 -1.0208 36 1 4.0379 4.6308 -0.5006 37 1 2.3497 5.3343 0.9087 38 1 3.0567 4.0577 1.9089 39 1 0.6338 3.8110 0.1546 40 1 0.6670 3.9225 1.9359 41 1 2.0325 3.5971 3.6752 42 1 0.9878 3.3572 5.0962 43 1 2.2229 2.1434 4.6845 44 1 -1.5427 3.0299 6.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597604829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:39 Heat of formation + Delta-G solvation = -9.247868 kcal Electronic energy + Delta-G solvation = -22832.826839 eV Core-core repulsion = 19786.129325 eV Total energy + Delta-G solvation = -3046.697514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25158 -37.70731 -34.75148 -34.61928 -33.20577 -30.83776 -30.01579 -28.56949 -26.34303 -25.10141 -24.65601 -22.88647 -21.63560 -21.29783 -19.93578 -17.83512 -16.49485 -16.29530 -15.72272 -15.44230 -15.04035 -14.59912 -14.21044 -14.08493 -13.33202 -13.30569 -13.13398 -12.98323 -12.45796 -12.36034 -12.25185 -11.92483 -11.47258 -11.32258 -11.14525 -11.08373 -10.87120 -10.74006 -10.65785 -10.57948 -10.42085 -10.39227 -10.23523 -10.15079 -9.89607 -8.89101 -8.38610 -8.17041 -7.93699 -7.81013 -5.98421 -4.01051 3.36477 3.42172 3.47680 3.64207 3.84784 4.08346 4.50314 4.97107 5.03221 5.09798 5.22498 5.34438 5.36874 5.41010 5.42899 5.55491 5.65762 5.70052 5.82830 5.84391 5.92118 5.96808 6.03731 6.17163 6.22690 6.26526 6.30439 6.47757 6.56623 6.75722 6.83853 6.90967 6.99071 7.09895 7.11395 7.32767 7.47137 7.58045 7.84597 8.06162 8.21264 8.47388 9.04773 9.42552 9.63849 11.08915 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.006346 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.043461 B = 4411.360551 C = 4941.978964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.160 4.160 3 C 0.154 3.846 4 H 0.057 0.943 5 C 0.046 3.954 6 N -0.539 5.539 7 C 0.026 3.974 8 C 0.058 3.942 9 C -0.137 4.137 10 C 0.114 3.886 11 N -0.610 5.610 12 C 0.533 3.467 13 O -0.539 6.539 14 C 0.032 3.968 15 H 0.044 0.956 16 C -0.129 4.129 17 C -0.496 4.496 18 H 0.069 0.931 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.065 0.935 26 H 0.035 0.965 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.126 0.874 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.046 0.954 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.015 0.985 42 H 0.090 0.910 43 H 0.031 0.969 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.636 3.771 -13.020 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.048 3.952 4 H 0.075 0.925 5 C -0.083 4.083 6 N -0.263 5.263 7 C -0.122 4.122 8 C -0.071 4.071 9 C -0.176 4.176 10 C -0.008 4.008 11 N -0.344 5.344 12 C 0.326 3.674 13 O -0.417 6.417 14 C 0.011 3.989 15 H 0.062 0.938 16 C -0.187 4.187 17 C -0.534 4.534 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.144 0.856 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.034 0.966 42 H 0.109 0.891 43 H 0.050 0.950 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.697 3.282 -12.315 14.888 hybrid contribution -0.345 -0.510 -0.471 0.776 sum 7.352 2.772 -12.786 15.007 Atomic orbital electron populations 1.21668 0.95703 1.00988 1.01296 1.22464 0.96809 0.96064 1.04398 1.20407 0.91299 0.94390 0.89093 0.92535 1.23195 0.95456 0.91194 0.98419 1.61835 1.01849 1.02300 1.60292 1.22435 0.90047 1.02370 0.97369 1.21621 0.96145 0.93138 0.96161 1.20927 0.96940 0.99181 1.00567 1.21168 0.96644 0.79847 1.03099 1.48244 1.63735 1.08689 1.13775 1.21739 0.76829 0.86431 0.82382 1.90300 1.53745 1.17905 1.79722 1.18868 0.93790 0.96159 0.90125 0.93793 1.21710 0.97605 0.98228 1.01168 1.21086 1.28415 0.93756 1.10189 0.91308 1.24922 0.96519 0.95369 0.97335 1.69871 1.41771 1.14536 1.27373 0.86496 0.78997 0.81589 0.80379 1.20694 1.21373 1.19856 0.91647 0.94552 0.93426 0.93630 0.85600 0.94318 0.90314 0.91602 0.91696 0.96233 0.93619 0.91657 0.91871 0.89766 0.92210 0.87990 0.96629 0.89116 0.94996 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.34 37.16 0.35 -2.07 16 2 C -0.16 -2.69 4.68 -26.73 -0.13 -2.82 16 3 C 0.15 2.44 1.68 -68.91 -0.12 2.33 16 4 H 0.06 0.81 6.89 -51.93 -0.36 0.46 16 5 C 0.05 0.67 5.37 -2.24 -0.01 0.65 16 6 N -0.54 -7.44 4.27 -243.41 -1.04 -8.48 16 7 C 0.03 0.29 9.30 60.07 0.56 0.85 16 8 C 0.06 0.71 5.50 -5.69 -0.03 0.68 16 9 C -0.14 -1.84 5.27 -30.04 -0.16 -2.00 16 10 C 0.11 1.73 5.49 -4.99 -0.03 1.71 16 11 N -0.61 -10.97 2.27 -167.96 -0.38 -11.36 16 12 C 0.53 12.01 4.68 -10.99 -0.05 11.95 16 13 O -0.54 -13.43 11.95 5.56 0.07 -13.36 16 14 C 0.03 0.78 1.78 -92.93 -0.17 0.62 16 15 H 0.04 1.11 6.54 -51.92 -0.34 0.77 16 16 C -0.13 -3.08 8.75 37.16 0.33 -2.75 16 17 C -0.50 -13.96 8.33 -34.44 -0.29 -14.24 16 18 H 0.07 2.04 7.03 -52.49 -0.37 1.67 16 19 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 20 N -0.90 -25.09 11.33 55.43 0.63 -24.46 16 21 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.06 1.35 5.82 -51.93 -0.30 1.05 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.13 2.55 5.12 -53.58 -0.27 2.27 16 30 H 0.04 0.49 7.98 -51.93 -0.41 0.07 16 31 H 0.08 1.29 7.98 -51.93 -0.41 0.87 16 32 H 0.07 0.66 7.99 -51.93 -0.42 0.25 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 35 H 0.05 0.55 6.13 -51.93 -0.32 0.23 16 36 H 0.06 0.68 7.53 -51.93 -0.39 0.29 16 37 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.08 1.35 6.74 -51.93 -0.35 1.00 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.71 5.22 -51.93 -0.27 1.44 16 41 H 0.01 0.31 6.13 -51.93 -0.32 -0.01 16 42 H 0.09 2.34 6.08 -51.93 -0.32 2.03 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 322.75 15.07 4.86 4.86 Total: -1.00 -29.80 322.75 -8.09 -37.89 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.37 Total: 1.64 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 0.16 Total: -3.56 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: -0.79 Total: -44.30 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.07 Total: -13.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.80 -8.09 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.645 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds