Wall clock time and date at job start Mon Mar 30 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46989 * 2 1 4 4 H 1.09001 * 107.83664 * 299.85114 * 3 2 1 5 5 C 1.54006 * 107.85881 * 183.37122 * 3 2 1 6 6 N 1.48818 * 110.60746 * 196.56647 * 5 3 2 7 7 C 1.46908 * 110.99411 * 196.20027 * 6 5 3 8 8 C 1.43908 * 112.04963 * 320.92337 * 6 5 3 9 9 C 1.52470 * 105.41667 * 98.70538 * 8 6 5 10 10 C 1.46643 * 114.11490 * 269.64443 * 9 8 6 11 11 N 1.43654 * 108.14379 * 56.57550 * 3 2 1 12 12 C 1.34778 * 120.54924 * 30.87262 * 11 3 2 13 13 O 1.21281 * 120.00136 * 6.27574 * 12 11 3 14 14 C 1.50698 * 120.00046 * 186.26598 * 12 11 3 15 15 H 1.09007 * 109.47219 * 34.77507 * 14 12 11 16 16 C 1.53001 * 109.47482 * 274.77898 * 14 12 11 17 17 C 1.50698 * 109.47279 * 154.77531 * 14 12 11 18 18 H 1.07999 * 119.99981 * 0.27885 * 17 14 12 19 19 C 1.37873 * 120.00235 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99931 * 0.02562 * 19 17 14 21 21 Si 1.86806 * 120.00405 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.46905 * 90.00220 * 21 19 17 23 23 H 1.48494 * 109.47168 * 210.00405 * 21 19 17 24 24 H 1.48502 * 109.46775 * 330.00571 * 21 19 17 25 25 H 1.08997 * 109.47187 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.46904 * 60.00115 * 1 2 3 27 27 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46981 * 240.00416 * 2 1 3 29 29 H 1.08997 * 109.47060 * 120.00376 * 2 1 3 30 30 H 1.08997 * 109.32743 * 76.23558 * 5 3 2 31 31 H 1.09004 * 109.20681 * 316.81681 * 5 3 2 32 32 H 1.09002 * 109.46761 * 181.35697 * 7 6 5 33 33 H 1.08998 * 109.47518 * 301.35810 * 7 6 5 34 34 H 1.08997 * 109.47165 * 61.35982 * 7 6 5 35 35 H 1.09000 * 110.24772 * 339.73482 * 8 6 5 36 36 H 1.08998 * 110.25200 * 217.68269 * 8 6 5 37 37 H 1.09009 * 108.55408 * 148.44560 * 9 8 6 38 38 H 1.08999 * 108.43690 * 30.76122 * 9 8 6 39 39 H 1.08997 * 109.95449 * 298.77276 * 10 9 8 40 40 H 1.09006 * 110.02460 * 177.54610 * 10 9 8 41 41 H 1.08996 * 109.47145 * 59.62636 * 16 14 12 42 42 H 1.08999 * 109.47375 * 179.63122 * 16 14 12 43 43 H 1.09006 * 109.46906 * 299.63406 * 16 14 12 44 44 H 0.97002 * 120.00118 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6643 1.9295 -0.9000 5 6 3.5770 1.4001 -0.0862 6 7 4.1600 2.7122 0.3050 7 6 5.5594 2.8171 -0.1297 8 6 3.3823 3.8178 -0.1888 9 6 2.5150 4.2596 0.9848 10 6 1.2119 3.5906 1.0520 11 7 1.4801 2.1149 1.1393 12 6 1.2051 1.4343 2.2697 13 8 1.5339 0.2714 2.3725 14 6 0.4894 2.1182 3.4058 15 1 -0.2312 2.8311 3.0048 16 6 1.5062 2.8571 4.2782 17 6 -0.2319 1.0890 4.2373 18 1 -0.1737 0.0436 3.9724 19 6 -0.9617 1.4813 5.3393 20 7 -1.0289 2.7538 5.6645 21 14 -1.8564 0.2055 6.3697 22 1 -0.9573 -0.2793 7.4475 23 1 -3.0674 0.8174 6.9731 24 1 -2.2556 -0.9357 5.5073 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8747 1.1652 -1.1081 31 1 3.9525 0.6263 0.5834 32 1 5.9682 3.7756 0.1899 33 1 6.1395 2.0083 0.3145 34 1 5.6086 2.7452 -1.2162 35 1 2.7558 3.4964 -1.0208 36 1 4.0379 4.6308 -0.5006 37 1 2.3497 5.3343 0.9087 38 1 3.0567 4.0577 1.9089 39 1 0.6338 3.8110 0.1546 40 1 0.6670 3.9225 1.9359 41 1 2.0325 3.5971 3.6752 42 1 0.9878 3.3572 5.0962 43 1 2.2229 2.1434 4.6845 44 1 -1.5427 3.0299 6.4396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597604829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:39 Heat of formation + Delta-G solvation = -28.014164 kcal Electronic energy + Delta-G solvation = -22833.640607 eV Core-core repulsion = 19786.129325 eV Total energy + Delta-G solvation = -3047.511281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67865 -39.04402 -36.29654 -36.05797 -34.92461 -32.48867 -31.64165 -29.77905 -27.46465 -27.19014 -25.86200 -24.50734 -22.97089 -22.69916 -21.13423 -19.47133 -18.30073 -17.86397 -17.15086 -16.69807 -16.46993 -16.22524 -15.64410 -15.31049 -14.99394 -14.73402 -14.38682 -14.28953 -14.15823 -13.73496 -13.34726 -13.20834 -13.10555 -12.93261 -12.69329 -12.62705 -12.58102 -12.34301 -12.18723 -12.07726 -11.92704 -11.78055 -11.76020 -11.63529 -11.56549 -10.95058 -10.50069 -9.58731 -9.35613 -9.10688 -8.12119 -6.21646 1.40188 1.41587 1.52373 2.08576 2.26728 2.48930 3.07073 3.17117 3.72749 3.97383 4.05530 4.10901 4.24214 4.31604 4.42943 4.45561 4.51420 4.56628 4.61358 4.67399 4.74374 4.76193 4.86875 4.91827 4.98692 5.02406 5.03489 5.05899 5.07303 5.12450 5.19563 5.40747 5.42868 5.54032 5.55397 5.76738 5.95821 6.05808 6.19759 6.27955 6.40391 6.72459 6.85931 7.44306 7.75171 8.93581 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024882 B = 0.006346 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.043461 B = 4411.360551 C = 4941.978964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.157 4.157 3 C 0.150 3.850 4 H 0.086 0.914 5 C 0.054 3.946 6 N -0.564 5.564 7 C 0.028 3.972 8 C 0.062 3.938 9 C -0.133 4.133 10 C 0.110 3.890 11 N -0.602 5.602 12 C 0.533 3.467 13 O -0.574 6.574 14 C 0.030 3.970 15 H 0.037 0.963 16 C -0.112 4.112 17 C -0.521 4.521 18 H 0.043 0.957 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.277 1.277 25 H 0.026 0.974 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.011 0.989 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 4.988 -15.248 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.194 4.194 3 C 0.045 3.955 4 H 0.104 0.896 5 C -0.075 4.075 6 N -0.289 5.289 7 C -0.119 4.119 8 C -0.066 4.066 9 C -0.172 4.172 10 C -0.011 4.011 11 N -0.335 5.335 12 C 0.325 3.675 13 O -0.454 6.454 14 C 0.009 3.991 15 H 0.055 0.945 16 C -0.171 4.171 17 C -0.559 4.559 18 H 0.061 0.939 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.778 3.222 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.203 1.203 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.030 0.970 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.199 4.542 -14.572 17.326 hybrid contribution -0.491 -0.857 0.179 1.003 sum 7.708 3.685 -14.393 16.738 Atomic orbital electron populations 1.21606 0.96252 1.00781 1.00541 1.22321 0.96246 0.96927 1.03929 1.20619 0.92484 0.93647 0.88780 0.89600 1.23027 0.94031 0.91254 0.99182 1.61754 1.03328 1.02279 1.61537 1.22446 0.88363 1.02748 0.98391 1.21649 0.96237 0.93240 0.95475 1.20875 0.95554 1.00744 1.00003 1.21391 0.98167 0.77958 1.03574 1.48172 1.62531 1.09883 1.12907 1.21210 0.76986 0.85995 0.83308 1.90325 1.55234 1.19126 1.80739 1.18762 0.93889 0.95415 0.91064 0.94490 1.21491 0.96837 0.97997 1.00728 1.21222 1.29808 0.93360 1.11541 0.93869 1.25557 0.97026 0.97192 0.98092 1.69946 1.41906 1.15499 1.27659 0.85651 0.78345 0.79410 0.78807 1.20401 1.19881 1.20250 0.95522 0.91865 0.93534 0.90618 0.89381 0.91604 0.93203 0.90504 0.92409 0.94473 0.92593 0.89217 0.88984 0.92778 0.89125 0.90131 0.93799 0.91113 0.97013 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.34 71.98 0.67 -3.94 16 2 C -0.16 -5.14 4.68 30.60 0.14 -5.00 16 3 C 0.15 4.45 1.68 45.86 0.08 4.53 16 4 H 0.09 2.10 6.89 -2.39 -0.02 2.09 16 5 C 0.05 1.44 5.37 86.27 0.46 1.91 16 6 N -0.56 -14.14 4.27 -924.00 -3.95 -18.08 16 7 C 0.03 0.54 9.30 127.69 1.19 1.73 16 8 C 0.06 1.27 5.50 86.68 0.48 1.74 16 9 C -0.13 -3.21 5.27 28.45 0.15 -3.06 16 10 C 0.11 3.13 5.49 83.68 0.46 3.59 16 11 N -0.60 -21.30 2.27 -803.69 -1.83 -23.12 16 12 C 0.53 24.76 4.68 87.66 0.41 25.17 16 13 O -0.57 -30.01 11.95 -3.03 -0.04 -30.04 16 14 C 0.03 1.53 1.78 -12.29 -0.02 1.51 16 15 H 0.04 1.93 6.54 -2.38 -0.02 1.92 16 16 C -0.11 -5.53 8.75 71.98 0.63 -4.90 16 17 C -0.52 -30.54 8.33 25.60 0.21 -30.32 16 18 H 0.04 2.70 7.03 -2.91 -0.02 2.68 16 19 C 0.02 1.15 5.30 84.65 0.45 1.60 16 20 N -0.91 -51.73 11.33 21.45 0.24 -51.49 16 21 Si 0.95 45.57 29.54 68.60 2.03 47.59 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 25 H 0.03 1.10 5.82 -2.39 -0.01 1.09 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.09 3.68 5.12 -28.47 -0.15 3.53 16 30 H 0.07 1.41 7.98 -2.39 -0.02 1.39 16 31 H 0.05 1.62 7.98 -2.38 -0.02 1.60 16 32 H 0.08 1.30 7.99 -2.39 -0.02 1.28 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 35 H 0.06 1.05 6.13 -2.39 -0.01 1.03 16 36 H 0.09 1.42 7.53 -2.39 -0.02 1.41 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.66 6.74 -2.39 -0.02 1.64 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.08 2.66 5.22 -2.38 -0.01 2.65 16 41 H 0.04 1.85 6.13 -2.39 -0.01 1.83 16 42 H 0.07 3.75 6.08 -2.39 -0.01 3.74 16 43 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -67.39 322.75 2.61 -64.78 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.84 Total: 15.81 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 5.31 Total: -5.45 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -5.53 Total: -92.70 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.04 Total: -30.04 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.39 2.61 -64.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597604829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.770 kcal (2) G-P(sol) polarization free energy of solvation -67.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds