Wall clock time and date at job start Mon Mar 30 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46803 * 2 1 4 4 H 1.09003 * 109.62782 * 298.47047 * 3 2 1 5 5 C 1.53234 * 109.63172 * 58.86243 * 3 2 1 6 6 N 1.46895 * 109.34178 * 173.53669 * 5 3 2 7 7 C 1.46896 * 111.00286 * 172.74648 * 6 5 3 8 8 C 1.52998 * 109.47545 * 190.35097 * 7 6 5 9 9 C 1.46903 * 111.27165 * 296.89602 * 6 5 3 10 10 C 1.53242 * 109.33486 * 63.10331 * 9 6 5 11 11 N 1.47079 * 108.68666 * 306.07068 * 10 9 6 12 12 C 1.34772 * 120.88254 * 231.28499 * 11 10 9 13 13 O 1.21287 * 119.99943 * 185.91940 * 12 11 10 14 14 C 1.50696 * 120.00412 * 5.92418 * 12 11 10 15 15 H 1.09009 * 109.47259 * 45.26533 * 14 12 11 16 16 C 1.53001 * 109.47034 * 285.27021 * 14 12 11 17 17 C 1.50699 * 109.47646 * 165.26691 * 14 12 11 18 18 H 1.07998 * 119.99473 * 359.97438 * 17 14 12 19 19 C 1.37876 * 120.00279 * 179.97438 * 17 14 12 20 20 N 1.31513 * 119.99797 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00013 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46983 * 90.00278 * 21 19 17 23 23 H 1.48494 * 109.47133 * 210.00237 * 21 19 17 24 24 H 1.48501 * 109.47375 * 330.00245 * 21 19 17 25 25 H 1.08996 * 109.47615 * 304.28753 * 1 2 3 26 26 H 1.09009 * 109.47005 * 64.28389 * 1 2 3 27 27 H 1.09001 * 109.47326 * 184.28414 * 1 2 3 28 28 H 1.08999 * 109.47328 * 240.00298 * 2 1 3 29 29 H 1.08993 * 109.47147 * 119.99903 * 2 1 3 30 30 H 1.09003 * 109.49182 * 53.58020 * 5 3 2 31 31 H 1.09003 * 109.51461 * 293.51078 * 5 3 2 32 32 H 1.09000 * 109.47230 * 310.35054 * 7 6 5 33 33 H 1.09002 * 109.47330 * 70.34535 * 7 6 5 34 34 H 1.09000 * 109.46821 * 300.00207 * 8 7 6 35 35 H 1.09003 * 109.47055 * 59.99901 * 8 7 6 36 36 H 1.08994 * 109.47468 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.49162 * 303.14938 * 9 6 5 38 38 H 1.08997 * 109.51463 * 183.07783 * 9 6 5 39 39 H 1.08997 * 109.62911 * 65.88336 * 10 9 6 40 40 H 1.09006 * 109.62516 * 186.26454 * 10 9 6 41 41 H 1.08994 * 109.47180 * 184.54655 * 16 14 12 42 42 H 1.08998 * 109.46662 * 304.54417 * 16 14 12 43 43 H 1.08994 * 109.47203 * 64.54582 * 16 14 12 44 44 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7005 1.9509 -0.9025 5 6 1.5079 2.1767 1.2353 6 7 2.1228 3.5085 1.3122 7 6 1.5132 4.3089 2.3825 8 6 1.9883 5.7588 2.2690 9 6 3.5781 3.4143 1.4891 10 6 4.1949 2.7308 0.2641 11 7 3.5139 1.4451 0.0490 12 6 4.2180 0.3049 -0.0949 13 8 3.6485 -0.7278 -0.3781 14 6 5.7127 0.3131 0.0961 15 1 5.9612 0.8789 0.9941 16 6 6.3784 0.9648 -1.1176 17 6 6.2085 -1.1026 0.2411 18 1 5.5108 -1.9259 0.1996 19 6 7.5527 -1.3467 0.4268 20 7 8.4022 -0.3440 0.4779 21 14 8.1671 -3.1015 0.6072 22 1 8.5068 -3.6471 -0.7315 23 1 9.3761 -3.1165 1.4693 24 1 7.1067 -3.9360 1.2273 25 1 -0.3634 0.5789 0.8490 26 1 -0.3633 0.4460 -0.9260 27 1 -0.3634 -1.0248 0.0768 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.7575 1.6086 2.1316 31 1 0.4254 2.2796 1.1596 32 1 0.4277 4.2740 2.2891 33 1 1.8076 3.9048 3.3511 34 1 3.0737 5.7938 2.3624 35 1 1.6938 6.1629 1.3004 36 1 1.5363 6.3526 3.0634 37 1 3.7987 2.8289 2.3817 38 1 3.9973 4.4146 1.5972 39 1 4.0655 3.3650 -0.6129 40 1 5.2572 2.5581 0.4374 41 1 7.4617 0.8985 -1.0172 42 1 6.0653 0.4479 -2.0248 43 1 6.0824 2.0122 -1.1756 44 1 9.3480 -0.5158 0.6081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597735703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:16 Heat of formation + Delta-G solvation = -42.662330 kcal Electronic energy + Delta-G solvation = -22183.927107 eV Core-core repulsion = 19135.780633 eV Total energy + Delta-G solvation = -3048.146474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49722 -39.13125 -36.37488 -35.91754 -34.86890 -32.33395 -31.51330 -30.55814 -27.37964 -27.25635 -25.52250 -24.49840 -23.37687 -21.95762 -21.64295 -19.82907 -18.34671 -17.56752 -17.17632 -16.70889 -16.45232 -16.13919 -15.97284 -15.64680 -14.94717 -14.73558 -14.51733 -14.37678 -14.09608 -13.86478 -13.56894 -13.18836 -12.93123 -12.85933 -12.78633 -12.75146 -12.58008 -12.40378 -12.27786 -12.17931 -12.08915 -11.95913 -11.81901 -11.65844 -11.51591 -11.05566 -10.53068 -9.70641 -9.64135 -9.24094 -8.15634 -6.26063 1.39029 1.39964 1.51188 1.93683 2.13595 2.44620 2.86658 3.13478 3.72913 3.87038 3.94394 4.10050 4.21358 4.29127 4.32408 4.35485 4.46514 4.52705 4.58207 4.62663 4.68625 4.71176 4.76000 4.83033 4.89930 4.95884 4.99245 5.03118 5.05487 5.15583 5.24899 5.34381 5.39746 5.41478 5.48592 5.71564 5.79687 5.94866 6.03299 6.07966 6.22045 6.63337 6.81906 7.39882 7.55259 8.89940 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021747 B = 0.005682 C = 0.004871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.207657 B = 4926.638814 C = 5746.996919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.150 3.850 4 H 0.081 0.919 5 C 0.055 3.945 6 N -0.539 5.539 7 C 0.049 3.951 8 C -0.144 4.144 9 C 0.044 3.956 10 C 0.108 3.892 11 N -0.621 5.621 12 C 0.521 3.479 13 O -0.572 6.572 14 C 0.029 3.971 15 H 0.035 0.965 16 C -0.121 4.121 17 C -0.526 4.526 18 H 0.045 0.955 19 C 0.021 3.979 20 N -0.910 5.910 21 Si 0.954 3.046 22 H -0.275 1.275 23 H -0.274 1.274 24 H -0.279 1.279 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.019 0.981 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.021 0.979 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.018 0.982 43 H 0.051 0.949 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 12.636 2.677 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.047 3.953 4 H 0.099 0.901 5 C -0.074 4.074 6 N -0.264 5.264 7 C -0.079 4.079 8 C -0.201 4.201 9 C -0.085 4.085 10 C -0.014 4.014 11 N -0.356 5.356 12 C 0.312 3.688 13 O -0.451 6.451 14 C 0.008 3.992 15 H 0.052 0.948 16 C -0.179 4.179 17 C -0.564 4.564 18 H 0.064 0.936 19 C -0.179 4.179 20 N -0.549 5.549 21 Si 0.780 3.220 22 H -0.201 1.201 23 H -0.199 1.199 24 H -0.204 1.204 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.550 12.380 2.122 18.477 hybrid contribution 0.905 -1.623 0.903 2.065 sum -12.646 10.757 3.025 16.876 Atomic orbital electron populations 1.21882 0.93768 1.02107 1.02640 1.21848 0.96182 0.94525 1.02497 1.21483 0.78794 0.96463 0.98576 0.90098 1.22524 1.00427 0.88677 0.95749 1.62035 1.03518 1.14135 1.46716 1.22175 1.00023 0.94407 0.91254 1.21774 1.01355 0.94271 1.02739 1.22522 0.88621 1.01519 0.95799 1.22018 0.97289 0.83390 0.98751 1.48507 1.06721 1.07631 1.72716 1.21550 0.90962 0.82227 0.74091 1.90514 1.71522 1.33939 1.49156 1.18763 0.86644 0.97347 0.96411 0.94757 1.21615 1.03454 0.97158 0.95670 1.21258 0.93003 0.92426 1.49755 0.93629 1.25573 0.96648 1.00921 0.94717 1.69937 1.03068 1.31644 1.50261 0.85613 0.77647 0.80468 0.78255 1.20065 1.19861 1.20437 0.91353 0.91499 0.92679 0.91476 0.94963 0.96295 0.87209 0.89495 0.95492 0.92793 0.91817 0.90844 0.96092 0.87035 0.89663 0.89441 0.90850 0.96323 0.93015 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.66 71.98 0.70 -2.81 16 2 C -0.11 -3.84 3.94 30.60 0.12 -3.72 16 3 C 0.15 4.67 3.20 44.88 0.14 4.82 16 4 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 5 C 0.05 1.39 4.33 86.38 0.37 1.76 16 6 N -0.54 -12.41 4.63 -895.27 -4.14 -16.55 16 7 C 0.05 0.86 5.68 86.30 0.49 1.35 16 8 C -0.14 -2.07 9.85 71.98 0.71 -1.36 16 9 C 0.04 1.12 5.46 86.38 0.47 1.59 16 10 C 0.11 3.31 5.54 86.35 0.48 3.79 16 11 N -0.62 -23.16 3.03 -793.14 -2.40 -25.56 16 12 C 0.52 24.80 6.76 87.66 0.59 25.39 16 13 O -0.57 -30.40 11.36 -3.05 -0.03 -30.44 16 14 C 0.03 1.52 1.78 -12.29 -0.02 1.50 16 15 H 0.03 1.83 7.13 -2.38 -0.02 1.81 16 16 C -0.12 -5.74 8.70 71.98 0.63 -5.12 16 17 C -0.53 -30.95 8.36 25.60 0.21 -30.74 16 18 H 0.05 2.87 6.85 -2.91 -0.02 2.85 16 19 C 0.02 1.16 5.29 84.65 0.45 1.61 16 20 N -0.91 -51.38 11.29 21.45 0.24 -51.13 16 21 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H 0.07 1.36 6.34 -2.39 -0.02 1.34 16 26 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 2.76 6.13 -2.39 -0.01 2.75 16 29 H 0.03 1.29 7.43 -2.39 -0.02 1.27 16 30 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 2.18 6.55 -2.39 -0.02 2.17 16 32 H 0.09 1.30 7.96 -2.39 -0.02 1.28 16 33 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 34 H 0.05 0.81 6.41 -2.39 -0.02 0.79 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.11 2.27 6.18 -2.39 -0.01 2.26 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.09 2.95 4.77 -2.38 -0.01 2.94 16 41 H 0.07 3.81 5.96 -2.39 -0.01 3.80 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 2.03 6.14 -2.39 -0.01 2.02 16 44 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -66.49 327.26 2.00 -64.49 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.97 Total: 13.67 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.34 Total: -1.94 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -6.30 Total: -93.24 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.03 Total: -30.44 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -66.49 2.00 -64.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597735703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.832 kcal (2) G-P(sol) polarization free energy of solvation -66.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds