Wall clock time and date at job start Mon Mar 30 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46840 * 2 1 4 4 H 1.09004 * 109.78247 * 61.40749 * 3 2 1 5 5 C 1.53233 * 109.63108 * 300.92127 * 3 2 1 6 6 N 1.46902 * 109.33975 * 186.45988 * 5 3 2 7 7 C 1.46897 * 110.99707 * 187.25481 * 6 5 3 8 8 C 1.53002 * 109.46819 * 170.00167 * 7 6 5 9 9 C 1.46892 * 111.26662 * 63.10701 * 6 5 3 10 10 C 1.53244 * 109.34149 * 296.89360 * 9 6 5 11 11 N 1.47077 * 109.62400 * 181.89231 * 3 2 1 12 12 C 1.34770 * 120.88421 * 350.91684 * 11 3 2 13 13 O 1.21277 * 120.00298 * 5.63934 * 12 11 3 14 14 C 1.50708 * 120.00157 * 185.63970 * 12 11 3 15 15 H 1.08999 * 109.46667 * 50.15211 * 14 12 11 16 16 C 1.52998 * 109.46871 * 290.15372 * 14 12 11 17 17 C 1.50702 * 109.47092 * 170.15195 * 14 12 11 18 18 H 1.07995 * 120.00187 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99724 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00235 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99933 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46778 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46741 * 120.00110 * 21 19 17 24 24 H 1.48496 * 109.46956 * 240.00122 * 21 19 17 25 25 H 1.09007 * 109.47076 * 305.82827 * 1 2 3 26 26 H 1.09000 * 109.47516 * 65.82716 * 1 2 3 27 27 H 1.08999 * 109.47005 * 185.83602 * 1 2 3 28 28 H 1.09004 * 109.46648 * 240.00393 * 2 1 3 29 29 H 1.08990 * 109.47150 * 120.00097 * 2 1 3 30 30 H 1.09007 * 109.49239 * 66.50126 * 5 3 2 31 31 H 1.08998 * 109.49482 * 306.42559 * 5 3 2 32 32 H 1.09004 * 109.47259 * 289.99764 * 7 6 5 33 33 H 1.08997 * 109.47488 * 50.00467 * 7 6 5 34 34 H 1.08997 * 109.47042 * 299.99457 * 8 7 6 35 35 H 1.09001 * 109.47320 * 59.99875 * 8 7 6 36 36 H 1.09004 * 109.47241 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.49789 * 56.85148 * 9 6 5 38 38 H 1.08998 * 109.49509 * 176.93527 * 9 6 5 39 39 H 1.09004 * 109.62472 * 294.12321 * 10 9 6 40 40 H 1.08995 * 109.78947 * 173.63426 * 10 9 6 41 41 H 1.08995 * 109.47114 * 52.79577 * 16 14 12 42 42 H 1.09005 * 109.46641 * 172.79341 * 16 14 12 43 43 H 1.09000 * 109.46871 * 292.79296 * 16 14 12 44 44 H 0.96997 * 120.00355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7001 1.9540 0.9006 5 6 1.5123 2.1751 -1.2381 6 7 2.1275 3.5069 -1.3144 7 6 1.5216 4.3059 -2.3879 8 6 2.0032 5.7541 -2.2797 9 6 3.5833 3.4124 -1.4861 10 6 4.1959 2.7305 -0.2580 11 7 3.5100 1.4468 -0.0457 12 6 4.2101 0.3048 0.1026 13 8 3.6294 -0.7576 0.1739 14 6 5.7146 0.3477 0.1797 15 1 6.0194 1.0891 0.9183 16 6 6.2847 0.7265 -1.1886 17 6 6.2357 -1.0075 0.5835 18 1 5.5466 -1.8188 0.7656 19 6 7.5925 -1.2117 0.7194 20 7 8.4317 -0.2239 0.4972 21 14 8.2385 -2.8914 1.2206 22 1 7.0983 -3.8238 1.4103 23 1 9.1338 -3.4146 0.1576 24 1 8.9969 -2.7709 2.4916 25 1 -0.3633 0.6016 0.8333 26 1 -0.3634 0.4208 -0.9375 27 1 -0.3633 -1.0223 0.1045 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 0.4295 2.2782 -1.1659 31 1 1.7649 1.6059 -2.1327 32 1 1.8145 3.8969 -3.3549 33 1 0.4360 4.2762 -2.2946 34 1 1.7102 6.1631 -1.3128 35 1 3.0888 5.7840 -2.3730 36 1 1.5540 6.3470 -3.0765 37 1 3.8072 2.8260 -2.3772 38 1 4.0026 4.4127 -1.5936 39 1 4.0633 3.3658 0.6177 40 1 5.2585 2.5546 -0.4253 41 1 5.8110 1.6437 -1.5383 42 1 7.3602 0.8828 -1.1034 43 1 6.0894 -0.0770 -1.8987 44 1 9.3862 -0.3675 0.5932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597735708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:25 Heat of formation + Delta-G solvation = -19.018697 kcal Electronic energy + Delta-G solvation = -22226.235989 eV Core-core repulsion = 19179.114780 eV Total energy + Delta-G solvation = -3047.121209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07186 -37.73986 -34.95662 -34.34266 -33.14544 -30.78013 -30.17726 -29.37337 -26.14831 -25.19503 -24.27729 -22.95381 -22.01609 -20.67139 -20.54785 -18.17756 -16.31568 -16.03840 -15.71093 -15.40819 -15.03984 -14.64933 -14.48559 -14.38320 -13.67053 -13.34515 -13.26815 -13.02815 -12.59393 -12.23374 -12.15591 -12.09265 -11.73614 -11.54503 -11.45463 -11.23549 -11.04027 -10.94434 -10.82169 -10.67944 -10.57673 -10.29293 -10.21370 -10.15456 -9.89569 -8.93645 -8.44828 -8.42358 -7.97562 -7.83401 -6.01864 -4.03748 3.33141 3.40660 3.48058 3.60754 3.71765 3.93900 4.48206 4.85095 4.98245 5.09126 5.14044 5.26675 5.32258 5.37313 5.41434 5.47426 5.52980 5.62272 5.68430 5.72477 5.79517 5.83564 5.92806 5.97275 6.02776 6.11160 6.16823 6.24991 6.34054 6.63253 6.67375 6.81399 6.86358 6.95994 7.03475 7.06627 7.26846 7.49824 7.75761 8.01908 8.13387 8.43057 9.04679 9.28946 9.61480 11.06462 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.005607 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.079263 B = 4992.563089 C = 5964.191958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.110 4.110 3 C 0.152 3.848 4 H 0.068 0.932 5 C 0.047 3.953 6 N -0.539 5.539 7 C 0.051 3.949 8 C -0.149 4.149 9 C 0.039 3.961 10 C 0.105 3.895 11 N -0.625 5.625 12 C 0.522 3.478 13 O -0.537 6.537 14 C 0.029 3.971 15 H 0.048 0.952 16 C -0.136 4.136 17 C -0.498 4.498 18 H 0.074 0.926 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.033 0.967 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 10.508 -4.798 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.148 4.148 3 C 0.048 3.952 4 H 0.086 0.914 5 C -0.082 4.082 6 N -0.264 5.264 7 C -0.077 4.077 8 C -0.206 4.206 9 C -0.090 4.090 10 C -0.018 4.018 11 N -0.361 5.361 12 C 0.314 3.686 13 O -0.414 6.414 14 C 0.008 3.992 15 H 0.066 0.934 16 C -0.193 4.193 17 C -0.536 4.536 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.038 0.962 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.298 10.183 -4.313 16.539 hybrid contribution 0.559 -1.052 -0.607 1.337 sum -11.740 9.131 -4.919 15.665 Atomic orbital electron populations 1.22002 0.97617 1.01297 1.00733 1.22031 0.92826 0.94341 1.05597 1.21263 0.80764 0.96554 0.96577 0.91426 1.22608 0.98949 0.88559 0.98092 1.61989 1.04203 1.14854 1.45364 1.22054 0.99278 0.94075 0.92317 1.21805 1.01437 0.95304 1.02068 1.22562 0.87806 1.00723 0.97877 1.22009 0.98590 0.84497 0.96751 1.48438 1.05296 1.07996 1.74417 1.21931 0.91809 0.81890 0.72931 1.90546 1.71016 1.30270 1.49549 1.18882 0.84681 0.99747 0.95873 0.93374 1.21917 1.04087 0.96863 0.96480 1.21175 0.91857 0.95540 1.45075 0.90823 1.24939 0.96822 0.97076 0.95369 1.69890 1.02509 1.31144 1.50134 0.86426 0.78776 0.84239 0.77987 1.19587 1.21110 1.21081 0.93218 0.93530 0.92848 0.90932 0.89085 0.90161 0.94617 0.95163 0.91026 0.91827 0.92494 0.92534 0.94413 0.89659 0.91697 0.87136 0.96213 0.89260 0.94746 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.37 37.16 0.35 -1.69 16 2 C -0.11 -1.85 3.89 -26.73 -0.10 -1.96 16 3 C 0.15 2.45 3.19 -67.49 -0.22 2.24 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C 0.05 0.64 4.33 -3.70 -0.02 0.62 16 6 N -0.54 -6.90 4.63 -234.32 -1.08 -7.99 16 7 C 0.05 0.52 5.68 -3.82 -0.02 0.50 16 8 C -0.15 -1.31 9.84 37.16 0.37 -0.95 16 9 C 0.04 0.52 5.45 -3.70 -0.02 0.50 16 10 C 0.10 1.66 5.73 -3.60 -0.02 1.64 16 11 N -0.63 -11.59 3.01 -164.92 -0.50 -12.09 16 12 C 0.52 11.97 6.91 -10.98 -0.08 11.89 16 13 O -0.54 -13.51 11.02 5.56 0.06 -13.45 16 14 C 0.03 0.73 1.80 -92.92 -0.17 0.56 16 15 H 0.05 1.24 7.74 -51.93 -0.40 0.84 16 16 C -0.14 -3.12 8.37 37.16 0.31 -2.81 16 17 C -0.50 -14.10 8.36 -34.44 -0.29 -14.39 16 18 H 0.07 2.20 6.80 -52.49 -0.36 1.85 16 19 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 20 N -0.90 -25.13 11.40 55.43 0.63 -24.50 16 21 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.05 0.53 6.91 -51.93 -0.36 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.39 7.09 -51.93 -0.37 1.02 16 29 H 0.09 1.79 6.45 -51.93 -0.34 1.46 16 30 H 0.08 0.95 6.79 -51.92 -0.35 0.60 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.51 6.40 -51.93 -0.33 0.18 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.97 6.16 -51.93 -0.32 0.65 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.11 1.86 4.10 -51.93 -0.21 1.65 16 41 H 0.02 0.38 5.35 -51.93 -0.28 0.10 16 42 H 0.09 2.22 6.30 -51.93 -0.33 1.89 16 43 H 0.03 0.81 8.13 -51.93 -0.42 0.39 16 44 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 326.94 15.07 4.93 4.93 Total: -1.00 -29.76 326.94 -8.40 -38.16 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.42 Total: 0.40 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 0.00 Total: -2.32 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: -0.95 Total: -44.57 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.06 Total: -13.45 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.76 -8.40 -38.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597735708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.146 kcal (2) G-P(sol) polarization free energy of solvation -29.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds