Wall clock time and date at job start Mon Mar 30 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46840 * 2 1 4 4 H 1.09004 * 109.78247 * 61.40749 * 3 2 1 5 5 C 1.53233 * 109.63108 * 300.92127 * 3 2 1 6 6 N 1.46902 * 109.33975 * 186.45988 * 5 3 2 7 7 C 1.46897 * 110.99707 * 187.25481 * 6 5 3 8 8 C 1.53002 * 109.46819 * 170.00167 * 7 6 5 9 9 C 1.46892 * 111.26662 * 63.10701 * 6 5 3 10 10 C 1.53244 * 109.34149 * 296.89360 * 9 6 5 11 11 N 1.47077 * 109.62400 * 181.89231 * 3 2 1 12 12 C 1.34770 * 120.88421 * 350.91684 * 11 3 2 13 13 O 1.21277 * 120.00298 * 5.63934 * 12 11 3 14 14 C 1.50708 * 120.00157 * 185.63970 * 12 11 3 15 15 H 1.08999 * 109.46667 * 50.15211 * 14 12 11 16 16 C 1.52998 * 109.46871 * 290.15372 * 14 12 11 17 17 C 1.50702 * 109.47092 * 170.15195 * 14 12 11 18 18 H 1.07995 * 120.00187 * 0.02562 * 17 14 12 19 19 C 1.37876 * 119.99724 * 179.97438 * 17 14 12 20 20 N 1.31513 * 120.00235 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99933 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46778 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46741 * 120.00110 * 21 19 17 24 24 H 1.48496 * 109.46956 * 240.00122 * 21 19 17 25 25 H 1.09007 * 109.47076 * 305.82827 * 1 2 3 26 26 H 1.09000 * 109.47516 * 65.82716 * 1 2 3 27 27 H 1.08999 * 109.47005 * 185.83602 * 1 2 3 28 28 H 1.09004 * 109.46648 * 240.00393 * 2 1 3 29 29 H 1.08990 * 109.47150 * 120.00097 * 2 1 3 30 30 H 1.09007 * 109.49239 * 66.50126 * 5 3 2 31 31 H 1.08998 * 109.49482 * 306.42559 * 5 3 2 32 32 H 1.09004 * 109.47259 * 289.99764 * 7 6 5 33 33 H 1.08997 * 109.47488 * 50.00467 * 7 6 5 34 34 H 1.08997 * 109.47042 * 299.99457 * 8 7 6 35 35 H 1.09001 * 109.47320 * 59.99875 * 8 7 6 36 36 H 1.09004 * 109.47241 * 179.97438 * 8 7 6 37 37 H 1.09000 * 109.49789 * 56.85148 * 9 6 5 38 38 H 1.08998 * 109.49509 * 176.93527 * 9 6 5 39 39 H 1.09004 * 109.62472 * 294.12321 * 10 9 6 40 40 H 1.08995 * 109.78947 * 173.63426 * 10 9 6 41 41 H 1.08995 * 109.47114 * 52.79577 * 16 14 12 42 42 H 1.09005 * 109.46641 * 172.79341 * 16 14 12 43 43 H 1.09000 * 109.46871 * 292.79296 * 16 14 12 44 44 H 0.96997 * 120.00355 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.7001 1.9540 0.9006 5 6 1.5123 2.1751 -1.2381 6 7 2.1275 3.5069 -1.3144 7 6 1.5216 4.3059 -2.3879 8 6 2.0032 5.7541 -2.2797 9 6 3.5833 3.4124 -1.4861 10 6 4.1959 2.7305 -0.2580 11 7 3.5100 1.4468 -0.0457 12 6 4.2101 0.3048 0.1026 13 8 3.6294 -0.7576 0.1739 14 6 5.7146 0.3477 0.1797 15 1 6.0194 1.0891 0.9183 16 6 6.2847 0.7265 -1.1886 17 6 6.2357 -1.0075 0.5835 18 1 5.5466 -1.8188 0.7656 19 6 7.5925 -1.2117 0.7194 20 7 8.4317 -0.2239 0.4972 21 14 8.2385 -2.8914 1.2206 22 1 7.0983 -3.8238 1.4103 23 1 9.1338 -3.4146 0.1576 24 1 8.9969 -2.7709 2.4916 25 1 -0.3633 0.6016 0.8333 26 1 -0.3634 0.4208 -0.9375 27 1 -0.3633 -1.0223 0.1045 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 0.4295 2.2782 -1.1659 31 1 1.7649 1.6059 -2.1327 32 1 1.8145 3.8969 -3.3549 33 1 0.4360 4.2762 -2.2946 34 1 1.7102 6.1631 -1.3128 35 1 3.0888 5.7840 -2.3730 36 1 1.5540 6.3470 -3.0765 37 1 3.8072 2.8260 -2.3772 38 1 4.0026 4.4127 -1.5936 39 1 4.0633 3.3658 0.6177 40 1 5.2585 2.5546 -0.4253 41 1 5.8110 1.6437 -1.5383 42 1 7.3602 0.8828 -1.1034 43 1 6.0894 -0.0770 -1.8987 44 1 9.3862 -0.3675 0.5932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597735708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:25 Heat of formation + Delta-G solvation = -37.947172 kcal Electronic energy + Delta-G solvation = -22227.056789 eV Core-core repulsion = 19179.114780 eV Total energy + Delta-G solvation = -3047.942009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.55662 -39.10951 -36.40117 -35.95432 -34.84722 -32.32440 -31.52708 -30.58283 -27.38693 -27.27909 -25.49080 -24.40619 -23.35329 -22.08554 -21.68742 -19.74371 -18.30969 -17.60876 -17.16611 -16.72558 -16.32148 -16.18513 -15.94105 -15.70807 -14.99755 -14.89786 -14.56251 -14.33996 -14.04903 -13.84331 -13.45159 -13.24701 -12.95676 -12.84870 -12.74267 -12.69562 -12.65763 -12.53988 -12.23872 -12.21338 -11.97714 -11.87462 -11.84161 -11.59984 -11.47463 -11.02793 -10.54385 -9.71583 -9.62025 -9.21006 -8.15887 -6.25124 1.38001 1.39951 1.53290 1.93839 2.14710 2.45185 2.87977 3.14116 3.72937 3.87541 3.95944 4.10852 4.21547 4.28347 4.33159 4.36227 4.45914 4.53160 4.59330 4.64877 4.69194 4.71057 4.76808 4.79489 4.87380 4.92026 5.00436 5.04386 5.08997 5.16239 5.25314 5.35140 5.41173 5.43054 5.50063 5.72707 5.79114 5.92854 6.04340 6.08952 6.20857 6.63487 6.83498 7.40863 7.55311 8.90839 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.005607 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.079263 B = 4992.563089 C = 5964.191958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.148 3.852 4 H 0.078 0.922 5 C 0.056 3.944 6 N -0.541 5.541 7 C 0.049 3.951 8 C -0.144 4.144 9 C 0.046 3.954 10 C 0.100 3.900 11 N -0.620 5.620 12 C 0.519 3.481 13 O -0.570 6.570 14 C 0.028 3.972 15 H 0.036 0.964 16 C -0.119 4.119 17 C -0.526 4.526 18 H 0.047 0.953 19 C 0.021 3.979 20 N -0.911 5.911 21 Si 0.954 3.046 22 H -0.280 1.280 23 H -0.275 1.275 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.025 0.975 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.016 0.984 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 12.368 -5.371 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C 0.045 3.955 4 H 0.096 0.904 5 C -0.072 4.072 6 N -0.266 5.266 7 C -0.078 4.078 8 C -0.202 4.202 9 C -0.082 4.082 10 C -0.023 4.023 11 N -0.355 5.355 12 C 0.310 3.690 13 O -0.450 6.450 14 C 0.006 3.994 15 H 0.054 0.946 16 C -0.177 4.177 17 C -0.565 4.565 18 H 0.065 0.935 19 C -0.179 4.179 20 N -0.550 5.550 21 Si 0.780 3.220 22 H -0.205 1.205 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.130 0.870 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.035 0.965 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.584 12.101 -4.898 18.840 hybrid contribution 0.930 -1.573 -0.409 1.873 sum -12.655 10.527 -5.307 17.295 Atomic orbital electron populations 1.21896 0.94029 1.02078 1.02527 1.21775 0.95806 0.94249 1.02280 1.21466 0.78942 0.96508 0.98559 0.90381 1.22498 1.00348 0.88637 0.95750 1.62018 1.03657 1.14258 1.46681 1.22168 1.00013 0.94366 0.91242 1.21780 1.01375 0.94350 1.02684 1.22498 0.88551 1.01509 0.95688 1.22174 0.97889 0.83442 0.98774 1.48393 1.06683 1.07644 1.72738 1.21550 0.91248 0.82778 0.73472 1.90550 1.71328 1.31810 1.51273 1.18777 0.86582 0.97746 0.96250 0.94620 1.21711 1.02977 0.97839 0.95155 1.21298 0.92156 0.96549 1.46472 0.93483 1.25578 0.96808 1.00320 0.95157 1.69960 1.02812 1.32359 1.49908 0.85561 0.77919 0.80238 0.78270 1.20526 1.20025 1.19860 0.91514 0.91478 0.92711 0.94028 0.92788 0.87441 0.96084 0.95326 0.89592 0.91953 0.92709 0.90835 0.95628 0.87044 0.90280 0.88520 0.92624 0.91102 0.96486 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.37 71.98 0.67 -2.87 16 2 C -0.10 -3.51 3.89 30.60 0.12 -3.39 16 3 C 0.15 4.63 3.19 44.96 0.14 4.77 16 4 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 5 C 0.06 1.41 4.33 86.38 0.37 1.78 16 6 N -0.54 -12.24 4.63 -895.27 -4.14 -16.39 16 7 C 0.05 0.85 5.68 86.30 0.49 1.34 16 8 C -0.14 -2.03 9.84 71.98 0.71 -1.32 16 9 C 0.05 1.13 5.45 86.39 0.47 1.60 16 10 C 0.10 3.03 5.73 86.35 0.49 3.53 16 11 N -0.62 -23.04 3.01 -794.09 -2.39 -25.43 16 12 C 0.52 24.65 6.91 87.66 0.61 25.25 16 13 O -0.57 -30.27 11.02 -3.02 -0.03 -30.31 16 14 C 0.03 1.42 1.80 -12.28 -0.02 1.40 16 15 H 0.04 1.91 7.74 -2.39 -0.02 1.89 16 16 C -0.12 -5.59 8.37 71.98 0.60 -4.99 16 17 C -0.53 -31.00 8.36 25.60 0.21 -30.79 16 18 H 0.05 2.97 6.80 -2.91 -0.02 2.95 16 19 C 0.02 1.16 5.30 84.65 0.45 1.61 16 20 N -0.91 -51.54 11.40 21.45 0.24 -51.30 16 21 Si 0.95 45.52 29.54 68.60 2.03 47.55 16 22 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.07 1.35 6.91 -2.39 -0.02 1.33 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.65 7.09 -2.38 -0.02 1.64 16 29 H 0.05 2.23 6.45 -2.39 -0.02 2.21 16 30 H 0.11 2.13 6.79 -2.38 -0.02 2.11 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.03 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.09 1.26 7.97 -2.39 -0.02 1.25 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.79 6.40 -2.39 -0.02 0.78 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 2.19 6.16 -2.39 -0.01 2.17 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.10 3.21 4.10 -2.39 -0.01 3.20 16 41 H 0.06 2.15 5.35 -2.39 -0.01 2.14 16 42 H 0.07 3.58 6.30 -2.38 -0.02 3.57 16 43 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16 44 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -66.63 326.94 1.99 -64.63 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.97 Total: 13.31 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 5.32 Total: -2.08 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -6.29 Total: -93.11 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.03 Total: -30.31 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -66.63 1.99 -64.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597735708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.685 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds