Wall clock time and date at job start Mon Mar 30 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 H 1.08998 * 109.47818 * 302.30985 * 3 2 1 5 5 C 1.53001 * 109.46942 * 182.30966 * 3 2 1 6 6 N 1.46904 * 109.47275 * 62.31403 * 3 2 1 7 7 C 1.46899 * 110.99936 * 191.10489 * 6 3 2 8 8 C 1.53246 * 109.35963 * 172.75554 * 7 6 3 9 9 N 1.47077 * 108.51750 * 53.81437 * 8 7 6 10 10 C 1.34777 * 120.87902 * 128.83870 * 9 8 7 11 11 O 1.21282 * 120.00249 * 355.26732 * 10 9 8 12 12 C 1.50706 * 120.00241 * 175.26947 * 10 9 8 13 13 H 1.09001 * 109.46510 * 330.67669 * 12 10 9 14 14 C 1.52998 * 109.46994 * 90.67392 * 12 10 9 15 15 C 1.50695 * 109.47091 * 210.67503 * 12 10 9 16 16 H 1.07997 * 120.00517 * 359.97438 * 15 12 10 17 17 C 1.37883 * 119.99849 * 179.97438 * 15 12 10 18 18 N 1.31514 * 120.00108 * 0.02562 * 17 15 12 19 19 Si 1.86797 * 119.99991 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46874 * 90.00383 * 19 17 15 21 21 H 1.48500 * 109.47303 * 210.00002 * 19 17 15 22 22 H 1.48495 * 109.47248 * 330.00499 * 19 17 15 23 23 C 1.47080 * 118.24007 * 308.81388 * 9 8 7 24 24 C 1.46891 * 111.02067 * 66.78195 * 6 3 2 25 25 H 1.09002 * 109.47216 * 59.99472 * 1 2 3 26 26 H 1.08994 * 109.46913 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46901 * 299.99904 * 1 2 3 28 28 H 1.09005 * 109.47144 * 240.00717 * 2 1 3 29 29 H 1.08994 * 109.47257 * 119.99912 * 2 1 3 30 30 H 1.08999 * 109.47240 * 60.00191 * 5 3 2 31 31 H 1.09006 * 109.47193 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47404 * 300.00045 * 5 3 2 33 33 H 1.08999 * 109.49745 * 52.78572 * 7 6 3 34 34 H 1.08999 * 109.49094 * 292.72847 * 7 6 3 35 35 H 1.08994 * 109.62489 * 173.52201 * 8 7 6 36 36 H 1.08994 * 109.62641 * 294.10405 * 8 7 6 37 37 H 1.08997 * 109.47044 * 185.93471 * 14 12 10 38 38 H 1.09001 * 109.47482 * 305.93287 * 14 12 10 39 39 H 1.09000 * 109.46966 * 65.93609 * 14 12 10 40 40 H 0.96996 * 120.00156 * 179.97438 * 18 17 15 41 41 H 1.09008 * 109.62792 * 170.90249 * 23 9 8 42 42 H 1.09001 * 109.62960 * 291.27784 * 23 9 8 43 43 H 1.09000 * 109.47437 * 67.27554 * 24 6 3 44 44 H 1.09001 * 109.51297 * 307.21449 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6433 1.9683 -0.8685 5 6 3.5689 1.4429 -0.0581 6 7 1.5965 2.1187 1.2264 7 6 1.8365 3.5657 1.1459 8 6 1.2002 4.2544 2.3581 9 7 1.7026 3.6076 3.5798 10 6 2.2234 4.3385 4.5853 11 8 2.3617 5.5364 4.4558 12 6 2.6340 3.6672 5.8706 13 1 2.0122 2.7873 6.0356 14 6 4.1017 3.2447 5.7790 15 6 2.4587 4.6286 7.0177 16 1 2.0875 5.6261 6.8345 17 6 2.7722 4.2348 8.3014 18 7 3.2247 3.0203 8.5246 19 14 2.5556 5.4267 9.7232 20 1 1.1863 5.2881 10.2810 21 1 3.5536 5.1232 10.7801 22 1 2.7544 6.8163 9.2389 23 6 1.6210 2.1422 3.6753 24 6 2.2407 1.5367 2.4114 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 3.8980 0.9412 -0.9681 31 1 3.9323 2.4706 -0.0577 32 1 3.9657 0.9172 0.8104 33 1 1.3929 3.9577 0.2307 34 1 2.9096 3.7567 1.1409 35 1 1.4723 5.3098 2.3641 36 1 0.1161 4.1531 2.3094 37 1 4.3694 2.6672 6.6638 38 1 4.2491 2.6339 4.8883 39 1 4.7321 4.1319 5.7197 40 1 3.4456 2.7433 9.4275 41 1 2.1712 1.8012 4.5524 42 1 0.5774 1.8381 3.7569 43 1 3.3082 1.7556 2.3890 44 1 2.0906 0.4571 2.4140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597736470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:20 Heat of formation + Delta-G solvation = -37.529025 kcal Electronic energy + Delta-G solvation = -21916.243671 eV Core-core repulsion = 18868.319794 eV Total energy + Delta-G solvation = -3047.923877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.88374 -38.23245 -35.28838 -33.80737 -32.45991 -31.11197 -30.17799 -29.61687 -26.44576 -25.17111 -24.00806 -23.52095 -22.52271 -20.93545 -19.75359 -17.97831 -16.70917 -16.15980 -15.74921 -15.07759 -14.99008 -14.77601 -14.38917 -14.33923 -13.86425 -13.76881 -13.26374 -12.95647 -12.61513 -12.50317 -12.16707 -11.98209 -11.90607 -11.43952 -11.39566 -11.19999 -11.14367 -10.98397 -10.82837 -10.73852 -10.64590 -10.62756 -10.45445 -10.23238 -10.00796 -8.97868 -8.56167 -8.41249 -8.28154 -7.90785 -6.03435 -4.06043 3.33633 3.39398 3.45926 3.61798 3.72523 3.95409 4.47287 4.61438 4.87479 5.00592 5.08612 5.18691 5.28091 5.29292 5.31470 5.44936 5.47117 5.53540 5.57384 5.62424 5.74024 5.78331 5.87446 5.92839 5.96562 6.02916 6.12152 6.15052 6.24176 6.34135 6.34312 6.66427 6.85050 6.99781 7.04243 7.08179 7.16185 7.47653 7.76237 7.98734 8.12024 8.40425 8.98649 9.24834 9.58512 11.04461 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.004499 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.205628 B = 6221.594127 C = 6444.354370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.079 0.921 5 C -0.188 4.188 6 N -0.527 5.527 7 C 0.043 3.957 8 C 0.116 3.884 9 N -0.628 5.628 10 C 0.525 3.475 11 O -0.550 6.550 12 C 0.032 3.968 13 H 0.047 0.953 14 C -0.126 4.126 15 C -0.499 4.499 16 H 0.067 0.933 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.115 3.885 24 C 0.038 3.962 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.009 0.991 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 -7.745 -16.647 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.029 4.029 4 H 0.097 0.903 5 C -0.246 4.246 6 N -0.252 5.252 7 C -0.085 4.085 8 C -0.008 4.008 9 N -0.364 5.364 10 C 0.316 3.684 11 O -0.427 6.427 12 C 0.011 3.989 13 H 0.065 0.935 14 C -0.184 4.184 15 C -0.538 4.538 16 H 0.085 0.915 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.727 3.273 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.091 4.091 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.028 0.972 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.012 -7.252 -16.492 18.265 hybrid contribution 0.817 0.599 0.584 1.170 sum -2.195 -6.652 -15.908 17.382 Atomic orbital electron populations 1.21646 0.95136 1.00664 1.02605 1.21580 0.96896 0.95141 1.01623 1.21758 0.92773 0.95463 0.92882 0.90267 1.22485 0.97717 1.02116 1.02329 1.62147 1.57973 1.03036 1.02022 1.22475 0.99183 0.87986 0.98882 1.21495 0.98000 0.97906 0.83390 1.48396 1.63553 1.06862 1.17616 1.22034 0.74076 0.87261 0.84981 1.90516 1.54617 1.15836 1.81702 1.18887 0.94887 0.96888 0.88261 0.93526 1.21679 0.96853 0.99800 1.00083 1.21042 1.43388 0.99135 0.90212 0.91477 1.24924 0.94985 0.95382 0.98758 1.69874 1.44895 1.17560 1.21116 0.86464 0.77777 0.81529 0.81545 1.20651 1.21219 1.19739 1.21779 1.01404 0.80122 0.97580 1.22575 0.96820 0.99434 0.90259 0.93395 0.93656 0.91228 0.92114 0.91811 0.92300 0.92620 0.92039 0.90339 0.94439 0.89254 0.91787 0.89140 0.97240 0.94579 0.92939 0.88271 0.91548 0.94039 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.78 37.16 0.36 -0.91 16 2 C -0.11 -1.00 5.31 -26.73 -0.14 -1.15 16 3 C 0.08 0.78 2.33 -67.71 -0.16 0.62 16 4 H 0.08 0.75 7.95 -51.93 -0.41 0.33 16 5 C -0.19 -1.82 8.44 37.16 0.31 -1.50 16 6 N -0.53 -6.26 3.90 -226.34 -0.88 -7.15 16 7 C 0.04 0.56 5.27 -3.70 -0.02 0.54 16 8 C 0.12 1.83 6.61 -3.60 -0.02 1.81 16 9 N -0.63 -11.75 3.01 -172.46 -0.52 -12.27 16 10 C 0.52 12.41 6.74 -10.98 -0.07 12.33 16 11 O -0.55 -14.75 15.43 5.56 0.09 -14.67 16 12 C 0.03 0.80 1.80 -92.92 -0.17 0.64 16 13 H 0.05 1.18 6.46 -51.93 -0.34 0.85 16 14 C -0.13 -3.01 8.66 37.16 0.32 -2.69 16 15 C -0.50 -14.29 8.32 -34.44 -0.29 -14.58 16 16 H 0.07 2.03 7.15 -52.49 -0.38 1.65 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 18 N -0.90 -25.07 11.39 55.43 0.63 -24.44 16 19 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.11 1.80 6.29 -3.60 -0.02 1.78 16 24 C 0.04 0.48 4.63 -3.71 -0.02 0.47 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.58 6.34 -51.93 -0.33 0.25 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.59 6.89 -51.93 -0.36 0.23 16 32 H 0.06 0.64 6.49 -51.93 -0.34 0.30 16 33 H 0.08 0.85 7.98 -51.93 -0.41 0.44 16 34 H 0.04 0.53 6.98 -51.93 -0.36 0.17 16 35 H 0.09 1.55 7.04 -51.93 -0.37 1.18 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 2.31 6.25 -51.93 -0.32 1.98 16 38 H 0.01 0.18 7.79 -51.93 -0.40 -0.22 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.10 1.68 5.29 -51.92 -0.27 1.40 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.58 6.67 -51.93 -0.35 0.23 16 44 H 0.08 0.94 6.17 -51.93 -0.32 0.62 16 LS Contribution 332.49 15.07 5.01 5.01 Total: -1.00 -30.64 332.49 -8.16 -38.79 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.45 Total: -1.06 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.01 Total: -1.06 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.77 Total: -43.85 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.64 -8.16 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597736470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.264 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds