Wall clock time and date at job start Mon Mar 30 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.52998 * 109.47078 * 240.00001 * 2 1 3 5 5 N 1.46896 * 109.46860 * 120.00025 * 2 1 3 6 6 C 1.47959 * 111.00040 * 323.85332 * 5 2 1 7 7 C 1.53936 * 86.18315 * 137.58530 * 6 5 2 8 8 C 1.47957 * 111.00114 * 63.21437 * 5 2 1 9 9 H 1.09002 * 113.86196 * 336.74186 * 8 5 2 10 10 C 1.53000 * 113.76417 * 108.09828 * 8 5 2 11 11 N 1.46494 * 109.46884 * 272.76866 * 10 8 5 12 12 C 1.34782 * 119.99932 * 173.24535 * 11 10 8 13 13 O 1.21279 * 119.99924 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00063 * 180.27443 * 12 11 10 15 15 C 1.52996 * 109.47236 * 179.72552 * 14 12 11 16 16 C 1.50698 * 109.47236 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99935 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99963 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00253 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47048 * 60.00331 * 20 18 16 22 22 H 1.48508 * 109.46939 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47019 * 299.99799 * 20 18 16 24 24 H 1.09004 * 109.47403 * 317.31939 * 1 2 3 25 25 H 1.09007 * 109.47169 * 77.31450 * 1 2 3 26 26 H 1.08997 * 109.47648 * 197.31467 * 1 2 3 27 27 H 1.08994 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47261 * 299.99872 * 3 2 1 29 29 H 1.09000 * 109.47303 * 60.00138 * 3 2 1 30 30 H 1.09003 * 109.46931 * 322.01391 * 4 2 1 31 31 H 1.09005 * 109.47112 * 82.00932 * 4 2 1 32 32 H 1.08993 * 109.47207 * 202.01248 * 4 2 1 33 33 H 1.08995 * 113.76453 * 23.26380 * 6 5 2 34 34 H 1.09003 * 113.85693 * 251.91247 * 6 5 2 35 35 H 1.09000 * 113.73360 * 221.91870 * 7 6 5 36 36 H 1.09000 * 113.73665 * 90.63233 * 7 6 5 37 37 H 1.09001 * 109.47277 * 152.76575 * 10 8 5 38 38 H 1.09007 * 109.46517 * 32.76598 * 10 8 5 39 39 H 0.97003 * 120.00326 * 353.24900 * 11 10 8 40 40 H 1.09001 * 109.47150 * 299.73088 * 14 12 11 41 41 H 1.09003 * 109.47302 * 59.72643 * 14 12 11 42 42 H 1.09001 * 109.47488 * 300.00328 * 15 14 12 43 43 H 1.09003 * 109.46901 * 59.99845 * 15 14 12 44 44 H 0.96999 * 120.00462 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0196 -0.6925 1.1994 6 6 1.1447 -0.4227 2.3617 7 6 1.2914 -1.9197 2.6891 8 6 1.6094 -2.1141 1.1955 9 1 0.7315 -2.3180 0.5825 10 6 2.7604 -3.0871 0.9319 11 7 2.9229 -3.2713 -0.5123 12 6 3.9652 -3.9812 -0.9880 13 8 4.7682 -4.4679 -0.2204 14 6 4.1360 -4.1654 -2.4739 15 6 5.3912 -4.9975 -2.7438 16 6 5.5623 -5.1812 -4.2297 17 1 4.8474 -4.7475 -4.9132 18 6 6.6314 -5.9030 -4.7165 19 7 7.5017 -6.4316 -3.8841 20 14 6.8431 -6.1313 -6.5584 21 1 6.9805 -4.8036 -7.2092 22 1 8.0609 -6.9399 -6.8202 23 1 5.6559 -6.8326 -7.1099 24 1 -0.3634 0.7555 0.6967 25 1 -0.3634 0.2257 -1.0026 26 1 -0.3634 -0.9810 0.3058 27 1 3.1299 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3974 -1.5753 -1.4634 31 1 2.0264 -0.0350 -2.0960 32 1 3.0593 -1.0673 -1.0783 33 1 0.1307 -0.1300 2.0896 34 1 1.5917 0.2356 3.1067 35 1 0.3616 -2.3929 3.0049 36 1 2.1294 -2.1445 3.3489 37 1 2.5385 -4.0471 1.3980 38 1 3.6812 -2.6831 1.3527 39 1 2.2805 -2.8823 -1.1263 40 1 3.2647 -4.6804 -2.8786 41 1 4.2364 -3.1909 -2.9517 42 1 6.2625 -4.4825 -2.3390 43 1 5.2908 -5.9720 -2.2659 44 1 8.2540 -6.9391 -4.2266 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597860503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:19 Heat of formation + Delta-G solvation = -6.326020 kcal Electronic energy + Delta-G solvation = -21229.867571 eV Core-core repulsion = 18183.296758 eV Total energy + Delta-G solvation = -3046.570813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.16377 -38.85246 -35.35115 -34.31740 -33.39165 -31.00224 -28.75152 -27.84618 -27.62667 -27.16896 -25.51438 -23.19569 -21.33712 -20.85741 -19.51852 -18.77809 -16.88138 -16.57099 -15.96622 -15.56100 -15.38809 -14.91506 -14.52005 -14.36859 -14.31281 -13.98997 -13.20270 -12.97833 -12.86034 -12.73007 -12.30460 -12.15866 -11.95228 -11.77024 -11.75100 -11.43311 -11.28425 -11.25183 -11.07497 -10.88276 -10.78273 -10.65067 -10.58046 -9.90133 -9.61088 -9.12501 -8.98025 -8.87516 -8.62848 -8.27816 -5.92182 -3.96573 3.35951 3.36881 3.41071 3.42727 3.51955 3.68343 4.27693 4.47811 4.50061 4.52697 4.65123 4.76692 4.94498 5.00742 5.07793 5.21049 5.27756 5.38986 5.42430 5.46208 5.49781 5.55310 5.58729 5.64992 5.70116 5.75472 5.84976 5.88393 5.96344 6.10000 6.15766 6.27637 6.29871 6.35107 6.80181 6.94383 6.95560 7.78317 7.91839 7.97821 8.12067 8.43310 8.88528 9.12260 9.66597 11.18761 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.003670 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.233586 B = 7628.614858 C = 8214.240422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 C -0.131 4.131 4 C -0.155 4.155 5 N -0.461 5.461 6 C -0.010 4.010 7 C -0.137 4.137 8 C 0.017 3.983 9 H 0.086 0.914 10 C 0.137 3.863 11 N -0.747 5.747 12 C 0.507 3.493 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.850 14.631 10.743 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.023 4.023 3 C -0.188 4.188 4 C -0.212 4.212 5 N -0.184 5.184 6 C -0.139 4.139 7 C -0.175 4.175 8 C -0.092 4.092 9 H 0.103 0.897 10 C 0.013 3.987 11 N -0.406 5.406 12 C 0.295 3.705 13 O -0.411 6.411 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.234 0.766 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.382 14.347 11.306 24.537 hybrid contribution -1.103 -0.053 -1.466 1.836 sum -17.485 14.294 9.840 24.635 Atomic orbital electron populations 1.22583 0.96695 1.01943 1.02621 1.21519 0.92720 0.95808 0.92246 1.21740 1.02107 0.93762 1.01219 1.22255 1.02775 0.99934 0.96251 1.68893 1.44437 1.02492 1.02573 1.24044 0.97649 0.97384 0.94812 1.23331 1.02532 0.95935 0.95750 1.23747 0.97400 0.90839 0.97243 0.89675 1.21140 0.97900 0.97204 0.82476 1.46688 1.29655 1.56769 1.07441 1.21525 0.79703 0.76612 0.92628 1.90662 1.42752 1.47871 1.59818 1.21857 1.03586 1.02692 0.88901 1.18885 0.90276 0.94890 0.95964 1.21195 1.09789 1.33555 0.92017 0.92708 1.25022 0.95928 0.95703 0.97699 1.69990 1.13716 1.34976 1.34166 0.86661 0.77447 0.78124 0.85734 1.20265 1.21291 1.20282 0.92041 0.91751 0.92160 0.91706 0.92381 0.92954 0.92817 0.91614 0.90039 0.90127 0.89536 0.90875 0.88744 0.91642 0.90432 0.76634 0.90478 0.90421 0.95815 0.95841 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 7.00 37.16 0.26 -1.03 16 2 C 0.07 0.60 0.73 -131.61 -0.10 0.50 16 3 C -0.13 -1.13 8.51 37.16 0.32 -0.81 16 4 C -0.15 -1.52 6.72 37.16 0.25 -1.27 16 5 N -0.46 -4.55 5.78 -215.08 -1.24 -5.80 16 6 C -0.01 -0.08 7.43 -2.77 -0.02 -0.10 16 7 C -0.14 -1.08 7.85 -25.79 -0.20 -1.29 16 8 C 0.02 0.17 2.37 -66.65 -0.16 0.01 16 9 H 0.09 0.75 5.79 -51.93 -0.30 0.45 16 10 C 0.14 1.81 5.70 -4.04 -0.02 1.78 16 11 N -0.75 -11.00 4.09 -60.30 -0.25 -11.25 16 12 C 0.51 10.14 7.83 -10.98 -0.09 10.05 16 13 O -0.54 -13.11 15.96 5.56 0.09 -13.02 16 14 C -0.13 -2.73 5.64 -27.89 -0.16 -2.89 16 15 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 16 C -0.53 -15.21 9.11 -34.44 -0.31 -15.52 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.82 13.29 55.43 0.74 -27.08 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.06 0.40 6.81 -51.93 -0.35 0.04 16 25 H 0.06 0.44 8.02 -51.92 -0.42 0.02 16 26 H 0.06 0.42 5.66 -51.93 -0.29 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.05 0.42 8.03 -51.93 -0.42 0.00 16 30 H 0.05 0.48 5.72 -51.93 -0.30 0.19 16 31 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 32 H 0.08 1.01 6.73 -51.93 -0.35 0.66 16 33 H 0.08 0.53 5.05 -51.93 -0.26 0.27 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.79 8.10 -51.93 -0.42 0.36 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 39 H 0.40 4.82 4.86 -40.82 -0.20 4.62 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -33.98 338.62 -8.51 -42.49 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.48 Total: 0.71 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.45 Total: -8.03 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.75 Total: -44.13 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.98 -8.51 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597860503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.164 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds