Wall clock time and date at job start Mon Mar 30 2020 04:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47467 * 2 1 4 4 C 1.53001 * 109.47209 * 240.00139 * 2 1 3 5 5 N 1.46900 * 109.46973 * 120.00199 * 2 1 3 6 6 C 1.47479 * 110.99936 * 161.28624 * 5 2 1 7 7 C 1.53509 * 87.93183 * 221.29445 * 6 5 2 8 8 C 1.47473 * 111.00054 * 65.31109 * 5 2 1 9 9 H 1.09002 * 113.47654 * 23.94306 * 8 5 2 10 10 C 1.52998 * 113.47569 * 253.52697 * 8 5 2 11 11 N 1.46501 * 109.47093 * 33.81185 * 10 8 5 12 12 C 1.34779 * 120.00113 * 172.15993 * 11 10 8 13 13 O 1.21283 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47408 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47519 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99982 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00238 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46903 * 59.99956 * 20 18 16 22 22 H 1.48501 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47183 * 300.00390 * 20 18 16 24 24 H 1.09004 * 109.47273 * 317.53361 * 1 2 3 25 25 H 1.09006 * 109.46674 * 77.52674 * 1 2 3 26 26 H 1.09000 * 109.47441 * 197.53090 * 1 2 3 27 27 H 1.08997 * 109.47632 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46966 * 300.00280 * 3 2 1 29 29 H 1.09001 * 109.47101 * 59.99970 * 3 2 1 30 30 H 1.09006 * 109.46652 * 290.40009 * 4 2 1 31 31 H 1.08993 * 109.47324 * 50.39907 * 4 2 1 32 32 H 1.08993 * 109.47386 * 170.40556 * 4 2 1 33 33 H 1.08999 * 113.47849 * 336.05665 * 6 5 2 34 34 H 1.08997 * 113.47948 * 106.46985 * 6 5 2 35 35 H 1.09005 * 114.17370 * 272.37972 * 7 6 5 36 36 H 1.08994 * 114.17482 * 139.67068 * 7 6 5 37 37 H 1.09008 * 109.47037 * 153.80597 * 10 8 5 38 38 H 1.08999 * 109.47515 * 273.80702 * 10 8 5 39 39 H 0.96997 * 119.99821 * 352.15387 * 11 10 8 40 40 H 1.09006 * 109.46796 * 300.00083 * 14 12 11 41 41 H 1.08993 * 109.47541 * 59.99483 * 14 12 11 42 42 H 1.08997 * 109.46667 * 299.99866 * 15 14 12 43 43 H 1.09002 * 109.47154 * 59.99538 * 15 14 12 44 44 H 0.96992 * 120.00193 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.4252 -1.1069 1.0336 7 6 3.0560 -2.4336 1.7119 8 6 1.6536 -2.1208 1.1714 9 1 1.4801 -2.5050 0.1662 10 6 0.5295 -2.4811 2.1448 11 7 -0.4050 -1.3577 2.2490 12 6 -1.5604 -1.5029 2.9276 13 8 -1.8267 -2.5638 3.4516 14 6 -2.5219 -0.3475 3.0343 15 6 -3.7442 -0.7747 3.8495 16 6 -4.7054 0.3809 3.9568 17 1 -4.4685 1.3255 3.4898 18 6 -5.8878 0.2321 4.6501 19 7 -6.1765 -0.9182 5.2184 20 14 -7.0790 1.6648 4.7837 21 1 -7.5100 2.0785 3.4241 22 1 -8.2659 1.2498 5.5738 23 1 -6.4083 2.8049 5.4586 24 1 -0.3634 0.7581 0.6939 25 1 -0.3633 0.2220 -1.0035 26 1 -0.3634 -0.9799 0.3095 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8233 -1.7864 -1.1677 31 1 1.5436 -0.3160 -2.1309 32 1 3.1164 -0.5753 -1.3391 33 1 3.7245 -1.2206 -0.0083 34 1 4.1266 -0.5039 1.6102 35 1 3.1296 -2.4146 2.7993 36 1 3.5225 -3.3099 1.2620 37 1 0.0003 -3.3612 1.7790 38 1 0.9530 -2.6938 3.1264 39 1 -0.1922 -0.5094 1.8297 40 1 -2.0298 0.4902 3.5284 41 1 -2.8389 -0.0452 2.0363 42 1 -4.2361 -1.6122 3.3549 43 1 -3.4275 -1.0772 4.8477 44 1 -7.0081 -1.0228 5.7065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597860504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:22 Heat of formation + Delta-G solvation = 12.716398 kcal Electronic energy + Delta-G solvation = -21442.899031 eV Core-core repulsion = 18397.153959 eV Total energy + Delta-G solvation = -3045.745072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50832 -38.77810 -35.43640 -34.31802 -33.36769 -30.97068 -28.67267 -27.99015 -27.69230 -27.30123 -25.48275 -23.09530 -21.29947 -20.84940 -19.44056 -18.88713 -16.94508 -16.70594 -15.98597 -15.62592 -15.08734 -14.96793 -14.42204 -14.32685 -14.13360 -14.05740 -13.45036 -13.15937 -12.87634 -12.67545 -12.33221 -12.14785 -11.90087 -11.83063 -11.53801 -11.41714 -11.36549 -11.17391 -11.00021 -10.88940 -10.86504 -10.58814 -10.51118 -9.87485 -9.58447 -9.09698 -9.06970 -8.88071 -8.48432 -8.25848 -5.90618 -3.94780 3.37775 3.39212 3.42099 3.43683 3.46930 3.92991 4.19006 4.44700 4.47629 4.53118 4.64484 4.70370 4.88245 5.00105 5.02524 5.21614 5.31943 5.36016 5.44005 5.48092 5.51879 5.56126 5.58455 5.63685 5.72035 5.78276 5.82525 5.86302 5.95643 6.02625 6.09399 6.21619 6.31755 6.34754 6.85186 6.94910 7.00774 7.80337 7.94220 8.12002 8.14342 8.45608 8.94797 9.14340 9.68268 11.20394 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003922 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.809845 B = 7137.423354 C = 7800.318015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 C -0.134 4.134 4 C -0.184 4.184 5 N -0.457 5.457 6 C -0.011 4.011 7 C -0.137 4.137 8 C 0.007 3.993 9 H 0.092 0.908 10 C 0.134 3.866 11 N -0.742 5.742 12 C 0.503 3.497 13 O -0.541 6.541 14 C -0.130 4.130 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.477 0.833 -13.800 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.027 4.027 3 C -0.191 4.191 4 C -0.242 4.242 5 N -0.180 5.180 6 C -0.140 4.140 7 C -0.175 4.175 8 C -0.102 4.102 9 H 0.110 0.890 10 C 0.009 3.991 11 N -0.405 5.405 12 C 0.291 3.709 13 O -0.417 6.417 14 C -0.170 4.170 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.253 0.747 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.914 0.461 -12.775 24.512 hybrid contribution -0.359 0.757 -0.887 1.220 sum 20.556 1.218 -13.662 24.712 Atomic orbital electron populations 1.22502 0.93534 1.04245 1.02875 1.21587 0.96051 0.95615 0.89485 1.21772 1.00729 0.94207 1.02417 1.22615 1.01602 1.01324 0.98693 1.69149 1.05009 1.09991 1.33847 1.23907 0.92667 0.96396 1.00980 1.23233 0.94978 0.97410 1.01915 1.23886 0.95772 0.90820 0.99741 0.89045 1.21166 0.89253 0.90280 0.98401 1.47030 1.20114 1.16169 1.57144 1.21569 0.81695 0.90831 0.76773 1.90649 1.76019 1.29176 1.45849 1.21846 0.97287 0.95122 1.02748 1.18881 0.89471 0.96520 0.95106 1.21202 1.03523 0.97984 1.33757 0.92702 1.25019 0.98061 0.95672 0.95602 1.69990 1.24409 1.23715 1.34792 0.86662 0.80536 0.82729 0.78050 1.20292 1.21305 1.20260 0.91125 0.91501 0.89664 0.92831 0.92147 0.91550 0.91742 0.91598 0.91817 0.90123 0.89795 0.88550 0.90490 0.91533 0.91812 0.74722 0.90431 0.90564 0.95864 0.95839 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 7.08 37.16 0.26 -1.49 16 2 C 0.06 0.55 0.72 -131.60 -0.10 0.45 16 3 C -0.13 -1.09 8.54 37.16 0.32 -0.77 16 4 C -0.18 -1.31 7.28 37.16 0.27 -1.04 16 5 N -0.46 -4.43 5.16 -220.84 -1.14 -5.56 16 6 C -0.01 -0.08 7.05 -7.55 -0.05 -0.14 16 7 C -0.14 -1.08 7.96 -26.20 -0.21 -1.28 16 8 C 0.01 0.07 2.61 -71.44 -0.19 -0.12 16 9 H 0.09 0.80 5.42 -51.93 -0.28 0.52 16 10 C 0.13 1.80 5.89 -4.04 -0.02 1.77 16 11 N -0.74 -11.60 4.00 -60.29 -0.24 -11.84 16 12 C 0.50 10.37 7.83 -10.99 -0.09 10.29 16 13 O -0.54 -13.42 15.95 5.56 0.09 -13.33 16 14 C -0.13 -2.80 5.64 -27.89 -0.16 -2.96 16 15 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 16 C -0.53 -15.31 9.11 -34.44 -0.31 -15.62 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.95 13.29 55.43 0.74 -27.22 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H 0.07 0.75 7.19 -51.93 -0.37 0.38 16 25 H 0.07 0.59 7.88 -51.93 -0.41 0.18 16 26 H 0.08 0.99 4.71 -51.93 -0.24 0.75 16 27 H 0.05 0.40 7.84 -51.93 -0.41 -0.01 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.46 5.51 -51.93 -0.29 0.18 16 31 H 0.07 0.45 7.94 -51.93 -0.41 0.03 16 32 H 0.06 0.40 6.29 -51.93 -0.33 0.07 16 33 H 0.08 0.51 5.05 -51.93 -0.26 0.25 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.82 7.83 -51.93 -0.41 0.42 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.94 8.09 -51.92 -0.42 0.52 16 38 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 39 H 0.41 5.63 3.43 -40.82 -0.14 5.49 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -34.15 334.57 -8.31 -42.46 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.28 Total: 1.81 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.49 Total: -8.35 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.64 Total: -44.63 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.15 -8.31 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597860504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.173 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds