Wall clock time and date at job start Mon Mar 30 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47467 * 2 1 4 4 C 1.53001 * 109.47209 * 240.00139 * 2 1 3 5 5 N 1.46900 * 109.46973 * 120.00199 * 2 1 3 6 6 C 1.47479 * 110.99936 * 161.28624 * 5 2 1 7 7 C 1.53509 * 87.93183 * 221.29445 * 6 5 2 8 8 C 1.47473 * 111.00054 * 65.31109 * 5 2 1 9 9 H 1.09002 * 113.47654 * 23.94306 * 8 5 2 10 10 C 1.52998 * 113.47569 * 253.52697 * 8 5 2 11 11 N 1.46501 * 109.47093 * 33.81185 * 10 8 5 12 12 C 1.34779 * 120.00113 * 172.15993 * 11 10 8 13 13 O 1.21283 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.50694 * 120.00069 * 180.02562 * 12 11 10 15 15 C 1.52998 * 109.47408 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47519 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99982 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00337 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99949 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00238 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46903 * 59.99956 * 20 18 16 22 22 H 1.48501 * 109.47198 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47183 * 300.00390 * 20 18 16 24 24 H 1.09004 * 109.47273 * 317.53361 * 1 2 3 25 25 H 1.09006 * 109.46674 * 77.52674 * 1 2 3 26 26 H 1.09000 * 109.47441 * 197.53090 * 1 2 3 27 27 H 1.08997 * 109.47632 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46966 * 300.00280 * 3 2 1 29 29 H 1.09001 * 109.47101 * 59.99970 * 3 2 1 30 30 H 1.09006 * 109.46652 * 290.40009 * 4 2 1 31 31 H 1.08993 * 109.47324 * 50.39907 * 4 2 1 32 32 H 1.08993 * 109.47386 * 170.40556 * 4 2 1 33 33 H 1.08999 * 113.47849 * 336.05665 * 6 5 2 34 34 H 1.08997 * 113.47948 * 106.46985 * 6 5 2 35 35 H 1.09005 * 114.17370 * 272.37972 * 7 6 5 36 36 H 1.08994 * 114.17482 * 139.67068 * 7 6 5 37 37 H 1.09008 * 109.47037 * 153.80597 * 10 8 5 38 38 H 1.08999 * 109.47515 * 273.80702 * 10 8 5 39 39 H 0.96997 * 119.99821 * 352.15387 * 11 10 8 40 40 H 1.09006 * 109.46796 * 300.00083 * 14 12 11 41 41 H 1.08993 * 109.47541 * 59.99483 * 14 12 11 42 42 H 1.08997 * 109.46667 * 299.99866 * 15 14 12 43 43 H 1.09002 * 109.47154 * 59.99538 * 15 14 12 44 44 H 0.96992 * 120.00193 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 3.4252 -1.1069 1.0336 7 6 3.0560 -2.4336 1.7119 8 6 1.6536 -2.1208 1.1714 9 1 1.4801 -2.5050 0.1662 10 6 0.5295 -2.4811 2.1448 11 7 -0.4050 -1.3577 2.2490 12 6 -1.5604 -1.5029 2.9276 13 8 -1.8267 -2.5638 3.4516 14 6 -2.5219 -0.3475 3.0343 15 6 -3.7442 -0.7747 3.8495 16 6 -4.7054 0.3809 3.9568 17 1 -4.4685 1.3255 3.4898 18 6 -5.8878 0.2321 4.6501 19 7 -6.1765 -0.9182 5.2184 20 14 -7.0790 1.6648 4.7837 21 1 -7.5100 2.0785 3.4241 22 1 -8.2659 1.2498 5.5738 23 1 -6.4083 2.8049 5.4586 24 1 -0.3634 0.7581 0.6939 25 1 -0.3633 0.2220 -1.0035 26 1 -0.3634 -0.9799 0.3095 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.8233 -1.7864 -1.1677 31 1 1.5436 -0.3160 -2.1309 32 1 3.1164 -0.5753 -1.3391 33 1 3.7245 -1.2206 -0.0083 34 1 4.1266 -0.5039 1.6102 35 1 3.1296 -2.4146 2.7993 36 1 3.5225 -3.3099 1.2620 37 1 0.0003 -3.3612 1.7790 38 1 0.9530 -2.6938 3.1264 39 1 -0.1922 -0.5094 1.8297 40 1 -2.0298 0.4902 3.5284 41 1 -2.8389 -0.0452 2.0363 42 1 -4.2361 -1.6122 3.3549 43 1 -3.4275 -1.0772 4.8477 44 1 -7.0081 -1.0228 5.7065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597860504.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:21 Heat of formation + Delta-G solvation = -11.309063 kcal Electronic energy + Delta-G solvation = -21443.940853 eV Core-core repulsion = 18397.153959 eV Total energy + Delta-G solvation = -3046.786894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.27939 -40.38988 -36.13902 -35.77862 -35.49017 -33.02516 -29.89869 -28.65447 -28.30985 -28.15322 -27.35026 -24.33471 -23.02671 -21.66775 -20.94453 -19.58979 -18.83963 -17.66174 -17.40668 -17.12229 -16.54463 -16.42261 -15.78060 -15.31092 -15.21453 -14.94362 -14.51613 -14.48244 -14.17845 -13.86409 -13.58900 -13.30815 -13.23601 -12.94093 -12.76634 -12.68025 -12.51138 -12.19916 -12.16809 -12.01129 -11.92766 -11.83892 -11.63907 -11.57084 -11.32496 -11.28173 -10.67960 -10.55863 -9.91922 -9.68315 -8.17322 -6.31894 1.41953 1.46987 1.54744 1.72855 2.27965 2.45561 3.02491 3.15197 3.49145 3.74578 3.80236 3.94352 4.05142 4.08906 4.14742 4.28693 4.37829 4.47438 4.50366 4.56350 4.62863 4.73440 4.77730 4.82916 4.84875 4.93554 4.98213 5.01229 5.05804 5.09458 5.11860 5.17939 5.29370 5.41825 5.47503 5.50283 5.62175 5.65017 5.85146 6.17855 6.18041 6.68227 6.85794 7.37405 7.39482 8.95344 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.003922 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.809845 B = 7137.423354 C = 7800.318015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 C -0.131 4.131 4 C -0.181 4.181 5 N -0.479 5.479 6 C -0.004 4.004 7 C -0.131 4.131 8 C 0.012 3.988 9 H 0.106 0.894 10 C 0.128 3.872 11 N -0.717 5.717 12 C 0.502 3.498 13 O -0.593 6.593 14 C -0.120 4.120 15 C 0.044 3.956 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.420 0.580 40 H 0.097 0.903 41 H 0.101 0.899 42 H -0.017 1.017 43 H -0.019 1.019 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.955 2.833 -15.721 27.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 C -0.189 4.189 4 C -0.239 4.239 5 N -0.203 5.203 6 C -0.132 4.132 7 C -0.169 4.169 8 C -0.098 4.098 9 H 0.124 0.876 10 C 0.004 3.996 11 N -0.378 5.378 12 C 0.290 3.710 13 O -0.473 6.473 14 C -0.160 4.160 15 C 0.007 3.993 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.187 1.187 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.267 0.733 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.002 0.998 43 H 0.000 1.000 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.456 2.501 -14.742 26.978 hybrid contribution -0.766 0.106 -0.307 0.832 sum 21.690 2.606 -15.048 26.527 Atomic orbital electron populations 1.22496 0.94893 1.02690 1.03363 1.21611 0.94984 0.96179 0.90015 1.21751 1.01247 0.93664 1.02220 1.22574 1.02452 1.01008 0.97827 1.69125 1.06525 1.09774 1.34858 1.23946 0.91387 0.95841 1.02043 1.23223 0.93457 0.98695 1.01535 1.23880 0.94990 0.91512 0.99388 0.87613 1.21373 0.89790 0.89205 0.99247 1.46871 1.18651 1.17441 1.54841 1.21387 0.82925 0.89711 0.76954 1.90630 1.77386 1.30859 1.48471 1.21627 0.95316 0.95944 1.03072 1.18664 0.91901 0.95318 0.93453 1.21673 1.03958 0.98782 1.33892 0.90706 1.26146 1.00404 0.98921 0.94868 1.70175 1.25222 1.26605 1.35749 0.85356 0.77423 0.78586 0.78765 1.18615 1.21192 1.18725 0.92000 0.90199 0.91487 0.91972 0.91183 0.92932 0.91752 0.91070 0.90464 0.88291 0.89505 0.89541 0.88331 0.92429 0.92728 0.73315 0.88441 0.88107 0.99836 1.00041 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 7.08 71.98 0.51 -2.74 16 2 C 0.06 0.93 0.72 3.53 0.00 0.93 16 3 C -0.13 -1.82 8.54 71.98 0.61 -1.20 16 4 C -0.18 -1.99 7.28 71.98 0.52 -1.47 16 5 N -0.48 -8.30 5.16 -852.59 -4.40 -12.70 16 6 C 0.00 -0.05 7.05 83.57 0.59 0.54 16 7 C -0.13 -1.76 7.96 30.94 0.25 -1.52 16 8 C 0.01 0.21 2.61 42.19 0.11 0.32 16 9 H 0.11 1.60 5.42 -2.39 -0.01 1.59 16 10 C 0.13 3.44 5.89 86.38 0.51 3.95 16 11 N -0.72 -22.40 4.00 -463.05 -1.85 -24.26 16 12 C 0.50 21.29 7.83 87.65 0.69 21.97 16 13 O -0.59 -31.01 15.95 -3.04 -0.05 -31.05 16 14 C -0.12 -5.22 5.64 29.85 0.17 -5.05 16 15 C 0.04 2.58 4.26 29.85 0.13 2.71 16 16 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 17 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 18 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 19 N -0.94 -60.69 13.29 21.45 0.28 -60.41 16 20 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 24 H 0.06 1.23 7.19 -2.38 -0.02 1.21 16 25 H 0.08 1.25 7.88 -2.38 -0.02 1.23 16 26 H 0.07 1.48 4.71 -2.39 -0.01 1.47 16 27 H 0.06 0.75 7.84 -2.39 -0.02 0.73 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.72 5.51 -2.38 -0.01 0.71 16 31 H 0.07 0.73 7.94 -2.39 -0.02 0.71 16 32 H 0.08 0.66 6.29 -2.39 -0.02 0.64 16 33 H 0.10 0.87 5.05 -2.39 -0.01 0.86 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.36 7.83 -2.38 -0.02 1.34 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.66 8.09 -2.38 -0.02 1.64 16 38 H 0.05 1.58 7.62 -2.39 -0.02 1.56 16 39 H 0.42 11.23 3.43 -92.71 -0.32 10.91 16 40 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 41 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 42 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 43 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 44 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -77.17 334.57 1.45 -75.72 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.66 Total: 18.82 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.78 Total: -13.23 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -5.97 Total: -97.36 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.17 1.45 -75.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597860504.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.412 kcal (2) G-P(sol) polarization free energy of solvation -77.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds