Wall clock time and date at job start Mon Mar 30 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 H 1.09004 * 109.49586 * 304.94770 * 3 2 1 5 5 C 1.53236 * 109.51796 * 184.88463 * 3 2 1 6 6 N 1.47079 * 108.52518 * 186.19737 * 5 3 2 7 7 C 1.34779 * 120.88337 * 231.16014 * 6 5 3 8 8 O 1.21283 * 119.99618 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.46605 * 179.97438 * 11 10 9 13 13 H 1.07990 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99484 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00385 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47380 * 89.99799 * 16 14 12 18 18 H 1.48499 * 109.47176 * 209.99920 * 16 14 12 19 19 H 1.48500 * 109.46795 * 329.99842 * 16 14 12 20 20 C 1.47079 * 118.23968 * 51.17980 * 6 5 3 21 21 C 1.53246 * 108.51891 * 308.81972 * 20 6 5 22 22 H 1.08996 * 109.48872 * 293.86772 * 21 20 6 23 23 C 1.53005 * 109.48977 * 173.78801 * 21 20 6 24 24 N 1.46899 * 109.49447 * 65.00060 * 3 2 1 25 25 H 1.08992 * 109.47549 * 60.00311 * 1 2 3 26 26 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47288 * 299.99852 * 1 2 3 28 28 H 1.09001 * 109.47288 * 240.00148 * 2 1 3 29 29 H 1.09001 * 109.47429 * 119.99921 * 2 1 3 30 30 H 1.09004 * 109.62791 * 305.90578 * 5 3 2 31 31 H 1.08997 * 109.63444 * 66.28737 * 5 3 2 32 32 H 1.08999 * 109.47187 * 299.99922 * 9 7 6 33 33 H 1.08997 * 109.46952 * 60.00092 * 9 7 6 34 34 H 1.09007 * 109.47063 * 299.99576 * 10 9 7 35 35 H 1.08997 * 109.47411 * 60.00083 * 10 9 7 36 36 H 1.08999 * 109.47219 * 299.99509 * 11 10 9 37 37 H 1.08997 * 109.47153 * 59.99822 * 11 10 9 38 38 H 0.96994 * 120.00365 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.63177 * 189.11207 * 20 6 5 40 40 H 1.09001 * 109.62764 * 68.52651 * 20 6 5 41 41 H 1.08991 * 109.46982 * 59.99839 * 23 21 20 42 42 H 1.09002 * 109.46846 * 180.02562 * 23 21 20 43 43 H 1.08995 * 109.46997 * 299.99719 * 23 21 20 44 44 H 1.00898 * 111.00108 * 307.24062 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6062 1.9817 -0.8423 5 6 3.5673 1.4456 -0.1230 6 7 4.0456 2.8281 0.0290 7 6 4.8822 3.3741 -0.8757 8 8 5.2502 2.7239 -1.8311 9 6 5.3604 4.7923 -0.7002 10 6 6.2914 5.1634 -1.8563 11 6 6.7774 6.6031 -1.6777 12 6 7.6950 6.9684 -2.8161 13 1 7.9102 6.2458 -3.5892 14 6 8.2595 8.2251 -2.8704 15 7 7.9978 9.1048 -1.9286 16 14 9.3962 8.6781 -4.2818 17 1 8.5996 9.2595 -5.3919 18 1 10.3937 9.6738 -3.8139 19 1 10.0991 7.4611 -4.7614 20 6 3.5871 3.5990 1.1946 21 6 2.0588 3.5112 1.2656 22 1 1.6249 4.0214 0.4058 23 6 1.5687 4.1743 2.5545 24 7 1.6515 2.0998 1.2550 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9989 0.8208 0.6591 31 1 3.8568 1.0603 -1.1006 32 1 4.5039 5.4663 -0.6934 33 1 5.8993 4.8799 0.2432 34 1 7.1481 4.4894 -1.8636 35 1 5.7522 5.0759 -2.7995 36 1 5.9211 7.2774 -1.6701 37 1 7.3168 6.6902 -0.7345 38 1 8.3946 9.9890 -1.9669 39 1 3.8893 4.6406 1.0867 40 1 4.0205 3.1812 2.1033 41 1 1.8731 5.2208 2.5631 42 1 0.4817 4.1113 2.6049 43 1 2.0022 3.6627 3.4138 44 1 0.6603 2.0082 1.4195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598532220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:11 Heat of formation + Delta-G solvation = -60.100060 kcal Electronic energy + Delta-G solvation = -20859.407741 eV Core-core repulsion = 17810.505111 eV Total energy + Delta-G solvation = -3048.902630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.24062 -38.18921 -35.02232 -34.23394 -33.83129 -32.04409 -30.51721 -28.55126 -27.33617 -26.30026 -24.40990 -23.01323 -21.28273 -20.65297 -20.09912 -18.73995 -17.13519 -16.36268 -16.02377 -15.80590 -15.67504 -15.48240 -14.52470 -14.40152 -14.02931 -13.82973 -13.54147 -13.25214 -12.85334 -12.49985 -12.37442 -12.20612 -12.01520 -11.99318 -11.65265 -11.44783 -11.34082 -11.18980 -11.09001 -11.04899 -10.79310 -10.54526 -10.51700 -9.65580 -9.61399 -9.23972 -9.00133 -8.97938 -8.43237 -8.30650 -5.96391 -3.97669 2.90717 3.03610 3.35759 3.41456 3.46563 3.77452 4.46181 4.50116 4.53161 4.73027 4.81164 4.85264 4.94339 4.99383 5.16970 5.21307 5.32669 5.39690 5.40722 5.46818 5.52655 5.60116 5.66057 5.70387 5.71651 5.72973 5.78289 5.87179 5.90961 6.03641 6.25655 6.50084 6.74177 6.74543 6.95317 7.04547 7.17826 7.51654 7.72558 7.85397 8.04451 8.42998 8.48719 9.09426 9.66231 11.15176 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.003357 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.096037 B = 8337.953371 C = 8932.657802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.074 3.926 4 H 0.042 0.958 5 C 0.120 3.880 6 N -0.624 5.624 7 C 0.515 3.485 8 O -0.538 6.538 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.021 3.979 12 C -0.517 4.517 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.116 3.884 21 C 0.068 3.932 22 H 0.044 0.956 23 C -0.145 4.145 24 N -0.680 5.680 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.015 0.985 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.780 -14.886 10.255 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.036 4.036 4 H 0.060 0.940 5 C -0.003 4.003 6 N -0.358 5.358 7 C 0.305 3.695 8 O -0.415 6.415 9 C -0.177 4.177 10 C -0.133 4.133 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.007 4.007 21 C -0.043 4.043 22 H 0.062 0.938 23 C -0.203 4.203 24 N -0.314 5.314 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.951 -15.256 10.108 24.277 hybrid contribution -0.156 0.775 -1.220 1.454 sum -16.107 -14.481 8.888 23.412 Atomic orbital electron populations 1.21780 0.95753 1.01961 1.01590 1.21533 0.95926 0.95171 1.02948 1.21896 0.95722 0.95183 0.90805 0.93964 1.21634 0.92148 0.83399 1.03132 1.48275 1.48263 1.13936 1.25367 1.21295 0.77207 0.89895 0.81110 1.90659 1.56560 1.63704 1.30526 1.21861 1.01484 0.91195 1.03117 1.21457 0.96984 0.99931 0.94915 1.19129 0.96003 0.89336 0.97143 1.21278 1.27500 0.98079 1.08719 0.92581 1.25016 0.96783 0.96568 0.96143 1.69959 1.44785 1.05654 1.33391 0.86593 0.80662 0.78255 0.82518 1.20693 1.21255 1.19825 1.21893 0.92967 0.97161 0.88713 1.21873 0.95751 0.88557 0.98071 0.93835 1.21780 1.01046 1.00673 0.96803 1.60451 1.21908 1.13951 1.35102 0.92915 0.92358 0.92577 0.91115 0.90723 0.91247 0.88939 0.89543 0.89370 0.92684 0.92776 0.96662 0.96588 0.93079 0.88839 0.90719 0.91409 0.92503 0.91429 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.69 37.15 0.36 -0.61 16 2 C -0.12 -0.89 5.62 -26.73 -0.15 -1.04 16 3 C 0.07 0.72 2.64 -67.59 -0.18 0.54 16 4 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 5 C 0.12 1.44 5.88 -3.60 -0.02 1.42 16 6 N -0.62 -8.46 3.01 -172.46 -0.52 -8.98 16 7 C 0.51 8.89 7.71 -10.99 -0.08 8.80 16 8 O -0.54 -11.26 15.44 5.56 0.09 -11.17 16 9 C -0.14 -2.37 4.07 -27.88 -0.11 -2.48 16 10 C -0.09 -2.11 4.44 -26.73 -0.12 -2.22 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 16 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.12 1.24 5.79 -3.60 -0.02 1.22 16 21 C 0.07 0.62 3.18 -67.58 -0.21 0.40 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 C -0.14 -1.01 9.43 37.16 0.35 -0.66 16 24 N -0.68 -5.87 6.15 -99.47 -0.61 -6.49 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.32 6.61 -51.93 -0.34 -0.02 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.25 7.07 -51.93 -0.37 0.88 16 32 H 0.09 1.36 7.66 -51.93 -0.40 0.97 16 33 H 0.09 1.39 8.00 -51.93 -0.42 0.98 16 34 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.09 0.96 6.02 -51.93 -0.31 0.65 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.34 2.48 6.84 -39.29 -0.27 2.21 16 LS Contribution 347.01 15.07 5.23 5.23 Total: -1.00 -33.02 347.01 -8.83 -41.85 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -7.98 Total: -2.91 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -0.74 Total: -8.16 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.39 Total: -42.01 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.02 -8.83 -41.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598532220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.254 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds