Wall clock time and date at job start Mon Mar 30 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 H 1.09004 * 109.49586 * 304.94770 * 3 2 1 5 5 C 1.53236 * 109.51796 * 184.88463 * 3 2 1 6 6 N 1.47079 * 108.52518 * 186.19737 * 5 3 2 7 7 C 1.34779 * 120.88337 * 231.16014 * 6 5 3 8 8 O 1.21283 * 119.99618 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.53001 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46804 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.46605 * 179.97438 * 11 10 9 13 13 H 1.07990 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99484 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00385 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99970 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47380 * 89.99799 * 16 14 12 18 18 H 1.48499 * 109.47176 * 209.99920 * 16 14 12 19 19 H 1.48500 * 109.46795 * 329.99842 * 16 14 12 20 20 C 1.47079 * 118.23968 * 51.17980 * 6 5 3 21 21 C 1.53246 * 108.51891 * 308.81972 * 20 6 5 22 22 H 1.08996 * 109.48872 * 293.86772 * 21 20 6 23 23 C 1.53005 * 109.48977 * 173.78801 * 21 20 6 24 24 N 1.46899 * 109.49447 * 65.00060 * 3 2 1 25 25 H 1.08992 * 109.47549 * 60.00311 * 1 2 3 26 26 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47288 * 299.99852 * 1 2 3 28 28 H 1.09001 * 109.47288 * 240.00148 * 2 1 3 29 29 H 1.09001 * 109.47429 * 119.99921 * 2 1 3 30 30 H 1.09004 * 109.62791 * 305.90578 * 5 3 2 31 31 H 1.08997 * 109.63444 * 66.28737 * 5 3 2 32 32 H 1.08999 * 109.47187 * 299.99922 * 9 7 6 33 33 H 1.08997 * 109.46952 * 60.00092 * 9 7 6 34 34 H 1.09007 * 109.47063 * 299.99576 * 10 9 7 35 35 H 1.08997 * 109.47411 * 60.00083 * 10 9 7 36 36 H 1.08999 * 109.47219 * 299.99509 * 11 10 9 37 37 H 1.08997 * 109.47153 * 59.99822 * 11 10 9 38 38 H 0.96994 * 120.00365 * 180.02562 * 15 14 12 39 39 H 1.08995 * 109.63177 * 189.11207 * 20 6 5 40 40 H 1.09001 * 109.62764 * 68.52651 * 20 6 5 41 41 H 1.08991 * 109.46982 * 59.99839 * 23 21 20 42 42 H 1.09002 * 109.46846 * 180.02562 * 23 21 20 43 43 H 1.08995 * 109.46997 * 299.99719 * 23 21 20 44 44 H 1.00898 * 111.00108 * 307.24062 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6062 1.9817 -0.8423 5 6 3.5673 1.4456 -0.1230 6 7 4.0456 2.8281 0.0290 7 6 4.8822 3.3741 -0.8757 8 8 5.2502 2.7239 -1.8311 9 6 5.3604 4.7923 -0.7002 10 6 6.2914 5.1634 -1.8563 11 6 6.7774 6.6031 -1.6777 12 6 7.6950 6.9684 -2.8161 13 1 7.9102 6.2458 -3.5892 14 6 8.2595 8.2251 -2.8704 15 7 7.9978 9.1048 -1.9286 16 14 9.3962 8.6781 -4.2818 17 1 8.5996 9.2595 -5.3919 18 1 10.3937 9.6738 -3.8139 19 1 10.0991 7.4611 -4.7614 20 6 3.5871 3.5990 1.1946 21 6 2.0588 3.5112 1.2656 22 1 1.6249 4.0214 0.4058 23 6 1.5687 4.1743 2.5545 24 7 1.6515 2.0998 1.2550 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9989 0.8208 0.6591 31 1 3.8568 1.0603 -1.1006 32 1 4.5039 5.4663 -0.6934 33 1 5.8993 4.8799 0.2432 34 1 7.1481 4.4894 -1.8636 35 1 5.7522 5.0759 -2.7995 36 1 5.9211 7.2774 -1.6701 37 1 7.3168 6.6902 -0.7345 38 1 8.3946 9.9890 -1.9669 39 1 3.8893 4.6406 1.0867 40 1 4.0205 3.1812 2.1033 41 1 1.8731 5.2208 2.5631 42 1 0.4817 4.1113 2.6049 43 1 2.0022 3.6627 3.4138 44 1 0.6603 2.0082 1.4195 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598532220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:11 Heat of formation + Delta-G solvation = -81.539457 kcal Electronic energy + Delta-G solvation = -20860.337423 eV Core-core repulsion = 17810.505111 eV Total energy + Delta-G solvation = -3049.832312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37321 -39.28109 -36.19280 -35.85674 -34.79208 -34.03816 -31.31042 -29.99142 -28.51529 -27.25296 -25.95437 -24.27402 -22.19729 -21.99362 -21.27071 -19.96815 -18.54994 -18.15845 -17.01287 -16.89595 -16.72977 -16.70974 -16.44890 -15.44964 -15.14519 -14.89626 -14.47980 -14.28202 -14.15082 -13.88152 -13.79490 -13.28870 -13.12526 -12.99918 -12.71203 -12.63848 -12.62276 -12.49745 -12.31463 -12.19893 -12.01086 -11.79031 -11.67987 -11.59224 -11.47315 -11.25342 -10.74314 -10.55222 -9.93126 -9.35493 -8.21084 -6.31127 1.38999 1.40128 1.51773 1.55393 1.91696 2.41060 3.05187 3.11809 3.52565 3.74086 3.82761 4.04969 4.10291 4.12973 4.16604 4.21160 4.24873 4.38479 4.49108 4.55131 4.65894 4.73419 4.78740 4.85942 4.91083 4.93496 4.96267 5.05542 5.08634 5.13825 5.16384 5.26070 5.34941 5.43031 5.45387 5.52631 5.73225 5.84815 5.97840 6.23739 6.29682 6.45752 6.83807 7.11132 7.37501 8.90523 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032852 B = 0.003357 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.096037 B = 8337.953371 C = 8932.657802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C 0.083 3.917 4 H 0.026 0.974 5 C 0.116 3.884 6 N -0.615 5.615 7 C 0.513 3.487 8 O -0.585 6.585 9 C -0.127 4.127 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.549 4.549 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.269 1.269 20 C 0.108 3.892 21 C 0.070 3.930 22 H 0.032 0.968 23 C -0.138 4.138 24 N -0.674 5.674 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.001 0.999 37 H 0.002 0.998 38 H 0.265 0.735 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -15.173 11.268 25.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.028 4.028 4 H 0.044 0.956 5 C -0.007 4.007 6 N -0.348 5.348 7 C 0.304 3.696 8 O -0.465 6.465 9 C -0.166 4.166 10 C -0.119 4.119 11 C -0.009 4.009 12 C -0.587 4.587 13 H 0.068 0.932 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.786 3.214 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.193 1.193 20 C -0.014 4.014 21 C -0.040 4.040 22 H 0.050 0.950 23 C -0.196 4.196 24 N -0.310 5.310 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.962 -15.552 11.168 25.579 hybrid contribution 0.114 0.853 -1.474 1.707 sum -16.848 -14.699 9.694 24.370 Atomic orbital electron populations 1.21756 0.94528 1.02691 1.01765 1.21501 0.96905 0.93546 1.03124 1.21773 0.93725 0.96546 0.90766 0.95610 1.21772 0.94013 0.82462 1.02438 1.48304 1.46700 1.14693 1.25099 1.21166 0.77659 0.89604 0.81220 1.90641 1.58635 1.64621 1.32596 1.21686 1.01304 0.91977 1.01676 1.21168 0.97273 0.97093 0.96412 1.19001 0.94874 0.91391 0.95637 1.21683 1.28710 0.98627 1.09667 0.93152 1.25896 0.98254 0.96347 0.98901 1.70057 1.45645 1.06119 1.35047 0.85500 0.78609 0.78134 0.79145 1.19689 1.20185 1.19336 1.22193 0.94337 0.97153 0.87761 1.21855 0.94380 0.88863 0.98920 0.95007 1.21735 1.01779 1.00657 0.95430 1.60439 1.22832 1.13602 1.34110 0.93416 0.91382 0.91711 0.91314 0.90206 0.90206 0.90909 0.87697 0.87466 0.94153 0.94252 0.98024 0.97953 0.92603 0.88337 0.89436 0.90974 0.91319 0.91031 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.69 71.98 0.70 -0.90 16 2 C -0.11 -1.53 5.62 30.59 0.17 -1.36 16 3 C 0.08 1.50 2.64 44.99 0.12 1.62 16 4 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 5 C 0.12 2.74 5.88 86.35 0.51 3.24 16 6 N -0.62 -16.30 3.01 -817.94 -2.46 -18.76 16 7 C 0.51 17.83 7.71 87.66 0.68 18.50 16 8 O -0.58 -25.21 15.44 -3.04 -0.05 -25.26 16 9 C -0.13 -4.37 4.07 29.85 0.12 -4.25 16 10 C -0.08 -3.70 4.44 30.60 0.14 -3.57 16 11 C 0.03 1.51 4.97 29.85 0.15 1.66 16 12 C -0.55 -32.73 9.11 25.60 0.23 -32.50 16 13 H 0.05 2.98 7.74 -2.92 -0.02 2.96 16 14 C 0.00 0.24 5.46 84.65 0.46 0.70 16 15 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 16 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C 0.11 2.11 5.79 86.35 0.50 2.61 16 21 C 0.07 1.13 3.18 45.00 0.14 1.28 16 22 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 23 C -0.14 -1.55 9.43 71.98 0.68 -0.87 16 24 N -0.67 -10.21 6.15 -468.63 -2.88 -13.09 16 25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.58 6.61 -2.39 -0.02 0.56 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 2.03 7.07 -2.39 -0.02 2.01 16 32 H 0.10 3.22 7.66 -2.39 -0.02 3.20 16 33 H 0.11 3.28 8.00 -2.39 -0.02 3.26 16 34 H 0.04 1.92 8.10 -2.38 -0.02 1.90 16 35 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.10 1.83 6.02 -2.39 -0.01 1.82 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.35 4.18 6.84 -89.70 -0.61 3.57 16 Total: -1.00 -71.65 347.01 1.85 -69.80 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.34 Total: 9.91 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.59 Total: -13.84 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -5.06 Total: -88.17 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.65 1.85 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598532220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.740 kcal (2) G-P(sol) polarization free energy of solvation -71.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds