Wall clock time and date at job start Mon Mar 30 2020 04:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47158 * 2 1 4 4 C 1.53004 * 109.47317 * 120.00012 * 2 1 3 5 5 H 1.09001 * 109.51215 * 300.07344 * 4 2 1 6 6 C 1.53241 * 109.49659 * 180.02562 * 4 2 1 7 7 N 1.47075 * 108.52064 * 186.21361 * 6 4 2 8 8 C 1.34780 * 120.87669 * 231.18923 * 7 6 4 9 9 O 1.21280 * 120.00423 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99795 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47306 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47019 * 120.00329 * 17 15 13 20 20 H 1.48498 * 109.47326 * 240.00104 * 17 15 13 21 21 C 1.47074 * 118.24014 * 51.45789 * 7 6 4 22 22 C 1.53695 * 108.27576 * 308.48042 * 21 7 6 23 23 N 1.46897 * 109.49028 * 60.13472 * 4 2 1 24 24 H 1.08997 * 109.47182 * 299.99740 * 1 2 3 25 25 H 1.08994 * 109.47068 * 59.99928 * 1 2 3 26 26 H 1.08999 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47182 * 240.00260 * 2 1 3 28 28 H 1.08999 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47190 * 299.99997 * 3 2 1 30 30 H 1.09004 * 109.46479 * 59.99907 * 3 2 1 31 31 H 1.09003 * 109.62612 * 66.50029 * 6 4 2 32 32 H 1.09003 * 109.62821 * 305.92119 * 6 4 2 33 33 H 1.09002 * 109.47060 * 299.99722 * 10 8 7 34 34 H 1.09001 * 109.47380 * 59.99809 * 10 8 7 35 35 H 1.09002 * 109.47153 * 299.99998 * 11 10 8 36 36 H 1.08998 * 109.47533 * 59.99628 * 11 10 8 37 37 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 38 38 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 39 39 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.63016 * 68.25422 * 21 7 6 41 41 H 1.09001 * 109.62513 * 188.83332 * 21 7 6 42 42 H 1.08997 * 109.65385 * 294.08176 * 22 21 7 43 43 H 1.09004 * 109.44306 * 173.95783 * 22 21 7 44 44 H 1.00905 * 111.00290 * 58.91705 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.6760 -0.2087 2.1397 6 6 3.5725 -0.7210 1.2501 7 7 4.0391 -1.5450 2.3754 8 6 4.9457 -1.0692 3.2519 9 8 5.3882 0.0521 3.1181 10 6 5.4106 -1.9309 4.3976 11 6 6.4319 -1.1585 5.2350 12 6 6.9033 -2.0330 6.3984 13 6 7.9097 -1.2725 7.2229 14 1 8.1853 -0.2659 6.9451 15 6 8.4781 -1.8614 8.3325 16 7 8.1422 -3.0871 8.6712 17 14 9.7261 -0.9189 9.3541 18 1 9.9301 0.4294 8.7662 19 1 9.2245 -0.7812 10.7450 20 1 11.0155 -1.6555 9.3636 21 6 3.4948 -2.9041 2.5155 22 6 1.9611 -2.8163 2.4683 23 7 1.5533 -2.1072 1.2481 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.9383 0.2991 1.3667 32 1 3.9392 -1.1397 0.3129 33 1 4.5571 -2.1983 5.0206 34 1 5.8729 -2.8371 4.0063 35 1 7.2853 -0.8914 4.6117 36 1 5.9700 -0.2521 5.6262 37 1 6.0497 -2.2997 7.0216 38 1 7.3652 -2.9396 6.0076 39 1 8.5423 -3.5015 9.4516 40 1 3.8542 -3.5286 1.6977 41 1 3.8094 -3.3280 3.4692 42 1 1.5979 -2.2748 3.3417 43 1 1.5401 -3.8217 2.4625 44 1 1.8641 -2.5990 0.4236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598577017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:35 Heat of formation + Delta-G solvation = -60.814836 kcal Electronic energy + Delta-G solvation = -20870.443217 eV Core-core repulsion = 17821.509592 eV Total energy + Delta-G solvation = -3048.933625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37074 -38.29656 -35.60741 -34.23822 -33.26752 -32.07913 -30.42032 -28.16256 -27.48576 -25.92631 -24.30134 -23.35669 -22.06658 -20.46810 -20.27155 -18.88215 -17.01723 -16.29274 -15.90705 -15.67465 -15.63157 -15.11289 -14.60974 -14.41026 -14.10114 -13.85476 -13.64735 -13.27329 -12.88954 -12.76303 -12.39066 -12.31726 -12.09785 -11.79711 -11.61276 -11.55301 -11.35151 -11.07755 -11.04749 -10.82728 -10.79771 -10.56970 -10.51203 -9.70334 -9.67902 -9.35964 -9.23316 -9.00899 -8.32726 -8.25742 -5.98132 -3.99417 2.85199 2.94389 3.33472 3.40734 3.46683 3.84454 4.42545 4.48813 4.62423 4.66434 4.73692 4.88249 4.93945 5.02300 5.10843 5.21875 5.38053 5.38235 5.44625 5.45864 5.58700 5.62524 5.66254 5.67915 5.68739 5.72996 5.76779 5.88639 6.08499 6.14114 6.21568 6.43322 6.67698 6.71315 6.92237 7.04379 7.15008 7.40956 7.70502 7.82893 8.02589 8.37324 8.46761 9.07852 9.64654 11.13461 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038047 B = 0.003231 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.746372 B = 8663.765904 C = 9148.839687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.152 4.152 4 C 0.079 3.921 5 H 0.085 0.915 6 C 0.077 3.923 7 N -0.624 5.624 8 C 0.516 3.484 9 O -0.537 6.537 10 C -0.136 4.136 11 C -0.095 4.095 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.067 3.933 22 C 0.044 3.956 23 N -0.678 5.678 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.067 0.933 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.083 0.395 -18.513 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.104 0.896 6 C -0.048 4.048 7 N -0.360 5.360 8 C 0.306 3.694 9 O -0.412 6.412 10 C -0.176 4.176 11 C -0.133 4.133 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.058 4.058 22 C -0.087 4.087 23 N -0.306 5.306 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.426 1.043 -18.184 24.527 hybrid contribution 1.678 0.113 0.446 1.740 sum -14.748 1.156 -17.738 23.097 Atomic orbital electron populations 1.21700 0.94221 1.02513 1.00972 1.21065 0.96807 0.95842 0.96706 1.21910 1.01393 0.95626 1.02079 1.22017 0.91764 0.89863 0.99505 0.89650 1.22362 0.95457 0.98049 0.88896 1.48273 1.43798 1.15316 1.28599 1.21304 0.77415 0.87785 0.82888 1.90662 1.55872 1.20381 1.74320 1.21859 1.01517 0.99397 0.94807 1.21455 0.96049 0.98643 0.97145 1.19129 0.96081 0.94709 0.91714 1.21311 1.23470 1.00608 1.10144 0.92532 1.25024 0.96977 0.94973 0.97569 1.69973 1.43818 1.13280 1.26693 0.86536 0.81223 0.80183 0.80102 1.19676 1.21024 1.21028 1.22607 0.95815 0.83604 1.03749 1.22501 0.92355 0.99878 0.93931 1.60665 1.62764 1.02470 1.04707 0.93009 0.93366 0.91475 0.91300 0.92291 0.92404 0.92400 0.88397 0.92108 0.89422 0.89481 0.92737 0.92724 0.96614 0.96638 0.93121 0.91506 0.88482 0.90212 0.89292 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.04 37.16 0.34 -0.67 16 2 C -0.08 -0.65 2.65 -90.62 -0.24 -0.89 16 3 C -0.15 -1.20 8.85 37.16 0.33 -0.88 16 4 C 0.08 0.73 2.14 -67.59 -0.14 0.58 16 5 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 6 C 0.08 0.86 5.30 -3.60 -0.02 0.84 16 7 N -0.62 -7.97 3.00 -172.19 -0.52 -8.49 16 8 C 0.52 8.70 7.71 -10.98 -0.08 8.62 16 9 O -0.54 -11.07 15.43 5.56 0.09 -10.98 16 10 C -0.14 -2.32 4.06 -27.88 -0.11 -2.43 16 11 C -0.09 -2.09 4.44 -26.74 -0.12 -2.21 16 12 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 13 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 C 0.07 0.63 6.51 -3.37 -0.02 0.61 16 22 C 0.04 0.35 6.72 -3.46 -0.02 0.33 16 23 N -0.68 -5.43 5.73 -106.20 -0.61 -6.04 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.51 7.61 -51.93 -0.40 0.12 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 6.58 -51.93 -0.34 0.16 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.10 1.29 5.73 -51.93 -0.30 1.00 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.36 7.67 -51.93 -0.40 0.96 16 34 H 0.09 1.36 7.99 -51.93 -0.41 0.94 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.91 6.02 -51.93 -0.31 0.60 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.34 2.33 8.78 -39.29 -0.35 1.99 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -32.88 345.60 -8.73 -41.60 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.96 Total: -2.37 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.65 Total: -9.59 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -0.39 Total: -40.99 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.88 -8.73 -41.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598577017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.212 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds