Wall clock time and date at job start Mon Mar 30 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47025 * 2 1 4 4 H 1.08998 * 110.46168 * 56.76058 * 3 2 1 5 5 C 1.54385 * 110.40987 * 294.34791 * 3 2 1 6 6 H 1.09003 * 110.32064 * 336.36745 * 5 3 2 7 7 C 1.50697 * 110.32383 * 98.47564 * 5 3 2 8 8 O 1.21280 * 119.99927 * 359.97438 * 7 5 3 9 9 N 1.34781 * 119.99971 * 180.02562 * 7 5 3 10 10 C 1.46498 * 119.99877 * 359.97438 * 9 7 5 11 11 C 1.52998 * 109.46820 * 90.00591 * 10 9 7 12 12 C 1.46501 * 119.99980 * 180.02562 * 9 7 5 13 13 C 1.50694 * 109.47260 * 89.99179 * 12 9 7 14 14 H 1.08001 * 120.00524 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99796 * 179.97438 * 13 12 9 16 16 N 1.31520 * 120.00501 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47313 * 60.00287 * 17 15 13 19 19 H 1.48500 * 109.47136 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47221 * 299.99729 * 17 15 13 21 21 C 1.54260 * 105.06002 * 217.37162 * 5 3 2 22 22 C 1.54380 * 105.06207 * 359.97438 * 21 5 3 23 23 N 1.48556 * 110.40879 * 179.17969 * 3 2 1 24 24 C 1.46903 * 110.99687 * 277.81486 * 23 3 2 25 25 H 1.08998 * 109.47050 * 185.58336 * 1 2 3 26 26 H 1.09000 * 109.47118 * 305.58610 * 1 2 3 27 27 H 1.09006 * 109.46663 * 65.58450 * 1 2 3 28 28 H 1.09002 * 109.47194 * 240.00072 * 2 1 3 29 29 H 1.08995 * 109.46884 * 119.99487 * 2 1 3 30 30 H 1.08999 * 109.47019 * 210.00612 * 10 9 7 31 31 H 1.09001 * 109.47650 * 330.00645 * 10 9 7 32 32 H 1.08996 * 109.47425 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.47342 * 299.99824 * 11 10 9 34 34 H 1.08999 * 109.47484 * 59.99589 * 11 10 9 35 35 H 1.08998 * 109.47038 * 209.99628 * 12 9 7 36 36 H 1.09006 * 109.46743 * 329.99529 * 12 9 7 37 37 H 0.96997 * 120.00243 * 179.97438 * 16 15 13 38 38 H 1.09006 * 110.32625 * 118.89655 * 21 5 3 39 39 H 1.09001 * 110.32392 * 241.00326 * 21 5 3 40 40 H 1.09001 * 110.41541 * 142.63154 * 22 21 5 41 41 H 1.09000 * 110.41515 * 265.07952 * 22 21 5 42 42 H 1.08996 * 109.47098 * 65.08635 * 24 23 3 43 43 H 1.09006 * 109.46934 * 185.08778 * 24 23 3 44 44 H 1.09002 * 109.47353 * 305.08251 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6393 1.9884 0.8541 5 6 1.6571 2.1490 -1.3182 6 1 1.4956 1.4151 -2.1079 7 6 0.4199 2.9870 -1.1227 8 8 -0.1197 3.0276 -0.0373 9 7 -0.0874 3.6905 -2.1544 10 6 0.5641 3.6409 -3.4656 11 6 -0.0305 2.4955 -4.2874 12 6 -1.2898 4.5056 -1.9642 13 6 -0.8923 5.8958 -1.5396 14 1 0.1516 6.1473 -1.4235 15 6 -1.8612 6.8470 -1.3004 16 7 -3.1324 6.5411 -1.4423 17 14 -1.3685 8.5705 -0.7748 18 1 -0.5156 9.1834 -1.8247 19 1 -2.5872 9.3970 -0.5831 20 1 -0.6110 8.5016 0.5006 21 6 2.8646 3.0471 -1.6571 22 6 3.8753 2.8084 -0.5149 23 7 3.5253 1.4669 0.0199 24 6 4.0362 1.2956 1.3865 25 1 -0.3633 -1.0228 0.1000 26 1 -0.3633 0.5980 0.8357 27 1 -0.3633 0.4248 -0.9358 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.4029 4.5843 -3.9872 31 1 1.6336 3.4766 -3.3340 32 1 0.4538 2.4588 -5.2632 33 1 0.1306 1.5522 -3.7658 34 1 -1.1000 2.6598 -4.4190 35 1 -1.8460 4.5566 -2.9002 36 1 -1.9157 4.0554 -1.1936 37 1 -3.8141 7.2103 -1.2737 38 1 3.2976 2.7544 -2.6137 39 1 2.5621 4.0940 -1.6838 40 1 4.8941 2.8086 -0.9024 41 1 3.7615 3.5681 0.2585 42 1 3.7736 0.3024 1.7508 43 1 5.1205 1.4074 1.3857 44 1 3.5938 2.0500 2.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601009921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:50 Heat of formation + Delta-G solvation = -39.250249 kcal Electronic energy + Delta-G solvation = -22273.653562 eV Core-core repulsion = 19225.655048 eV Total energy + Delta-G solvation = -3047.998515 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.17483 -37.82092 -35.32470 -33.24928 -32.95655 -31.99370 -30.04957 -28.00556 -27.05221 -25.64863 -23.53807 -22.99500 -22.35757 -21.03328 -19.84296 -18.38183 -16.40943 -16.37532 -15.82281 -15.49765 -14.85759 -14.59616 -14.24355 -14.06202 -13.87643 -13.48660 -13.12937 -12.81799 -12.75005 -12.38920 -12.21846 -11.91494 -11.75941 -11.65039 -11.37195 -11.29229 -11.19007 -11.00017 -10.93657 -10.88620 -10.61310 -10.48975 -10.40456 -10.27328 -10.09944 -9.63656 -8.79430 -8.44880 -8.42519 -7.62389 -6.03767 -4.08469 3.30907 3.35479 3.37079 3.46435 3.82831 4.15974 4.44820 4.63138 4.79435 5.04707 5.22225 5.26542 5.31330 5.34037 5.39671 5.47175 5.50254 5.54108 5.65647 5.68910 5.78168 5.78962 5.84320 5.85678 5.99480 6.04730 6.07891 6.14833 6.21681 6.25794 6.27173 6.40916 6.52637 6.61607 6.87932 7.07347 7.11821 7.46509 7.58400 7.92929 8.24780 8.47466 8.91028 9.13785 9.56612 11.04169 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.005922 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.644359 B = 4727.382334 C = 5045.983497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C 0.073 3.927 4 H 0.076 0.924 5 C -0.109 4.109 6 H 0.098 0.902 7 C 0.513 3.487 8 O -0.539 6.539 9 N -0.595 5.595 10 C 0.097 3.903 11 C -0.169 4.169 12 C 0.247 3.753 13 C -0.525 4.525 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C -0.117 4.117 22 C 0.033 3.967 23 N -0.515 5.515 24 C 0.014 3.986 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.423 -10.885 -1.999 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.035 4.035 4 H 0.094 0.906 5 C -0.131 4.131 6 H 0.116 0.884 7 C 0.299 3.701 8 O -0.416 6.416 9 N -0.327 5.327 10 C -0.027 4.027 11 C -0.227 4.227 12 C 0.128 3.872 13 C -0.564 4.564 14 H 0.073 0.927 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.155 4.155 22 C -0.095 4.095 23 N -0.238 5.238 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 12.163 -11.196 -1.725 16.621 hybrid contribution -0.136 1.728 0.686 1.864 sum 12.027 -9.468 -1.039 15.342 Atomic orbital electron populations 1.21744 0.95066 1.00764 1.03025 1.21371 0.95819 0.94903 1.01786 1.22664 0.86914 0.96533 0.97370 0.90633 1.22102 0.94193 0.97748 0.99063 0.88416 1.20124 0.85187 0.80224 0.84575 1.90641 1.61286 1.64748 1.24955 1.48193 1.29819 1.46086 1.08565 1.21608 0.96902 0.99335 0.84835 1.22210 1.02145 0.98837 0.99511 1.19241 0.81307 0.89124 0.97540 1.21387 0.93091 0.95520 1.46378 0.92652 1.24926 0.94818 0.98938 0.95381 1.69922 0.99517 1.34701 1.49246 0.86589 0.77838 0.83953 0.79210 1.20261 1.21159 1.20267 1.22367 0.94164 1.00250 0.98700 1.23108 0.99426 0.90075 0.96913 1.65355 1.09499 1.28462 1.20511 1.22491 1.00255 1.01389 0.89347 0.93294 0.91729 0.92935 0.91749 0.92326 0.90170 0.90896 0.92235 0.93080 0.92167 0.95138 0.93978 0.92694 0.90324 0.90266 0.90089 0.93608 0.91344 0.91568 0.95231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.78 37.16 0.33 -1.83 16 2 C -0.10 -1.35 5.56 -26.73 -0.15 -1.49 16 3 C 0.07 1.11 1.73 -66.07 -0.11 0.99 16 4 H 0.08 1.38 6.65 -51.93 -0.35 1.03 16 5 C -0.11 -1.70 1.62 -90.39 -0.15 -1.84 16 6 H 0.10 1.39 6.80 -51.93 -0.35 1.04 16 7 C 0.51 10.51 5.91 -10.99 -0.06 10.45 16 8 O -0.54 -13.24 13.95 5.56 0.08 -13.16 16 9 N -0.60 -12.46 2.45 -175.06 -0.43 -12.89 16 10 C 0.10 1.57 5.69 -4.04 -0.02 1.55 16 11 C -0.17 -2.30 10.22 37.16 0.38 -1.92 16 12 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 13 C -0.52 -14.86 9.39 -34.44 -0.32 -15.18 16 14 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.12 -1.59 4.70 -25.35 -0.12 -1.71 16 22 C 0.03 0.42 6.49 -2.16 -0.01 0.41 16 23 N -0.51 -6.81 5.34 -230.31 -1.23 -8.04 16 24 C 0.01 0.16 9.41 60.07 0.57 0.73 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.08 7.75 -51.93 -0.40 0.67 16 27 H 0.05 0.83 7.07 -51.93 -0.37 0.46 16 28 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 29 H 0.06 0.72 7.49 -51.93 -0.39 0.33 16 30 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 31 H 0.07 1.00 4.35 -51.93 -0.23 0.78 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.67 7.21 -51.93 -0.37 0.30 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 0.89 7.66 -51.93 -0.40 0.49 16 39 H 0.08 1.22 7.20 -51.93 -0.37 0.85 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.63 7.98 -51.93 -0.41 0.22 16 42 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.36 7.97 -51.93 -0.41 -0.05 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -31.73 340.10 -8.29 -40.02 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.75 Total: -0.25 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 0.19 Total: -1.78 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.92 Total: -46.86 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.73 -8.29 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.772 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds