Wall clock time and date at job start Mon Mar 30 2020 05:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47025 * 2 1 4 4 H 1.08998 * 110.46168 * 56.76058 * 3 2 1 5 5 C 1.54385 * 110.40987 * 294.34791 * 3 2 1 6 6 H 1.09003 * 110.32064 * 336.36745 * 5 3 2 7 7 C 1.50697 * 110.32383 * 98.47564 * 5 3 2 8 8 O 1.21280 * 119.99927 * 359.97438 * 7 5 3 9 9 N 1.34781 * 119.99971 * 180.02562 * 7 5 3 10 10 C 1.46498 * 119.99877 * 359.97438 * 9 7 5 11 11 C 1.52998 * 109.46820 * 90.00591 * 10 9 7 12 12 C 1.46501 * 119.99980 * 180.02562 * 9 7 5 13 13 C 1.50694 * 109.47260 * 89.99179 * 12 9 7 14 14 H 1.08001 * 120.00524 * 0.02562 * 13 12 9 15 15 C 1.37874 * 119.99796 * 179.97438 * 13 12 9 16 16 N 1.31520 * 120.00501 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00067 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47313 * 60.00287 * 17 15 13 19 19 H 1.48500 * 109.47136 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47221 * 299.99729 * 17 15 13 21 21 C 1.54260 * 105.06002 * 217.37162 * 5 3 2 22 22 C 1.54380 * 105.06207 * 359.97438 * 21 5 3 23 23 N 1.48556 * 110.40879 * 179.17969 * 3 2 1 24 24 C 1.46903 * 110.99687 * 277.81486 * 23 3 2 25 25 H 1.08998 * 109.47050 * 185.58336 * 1 2 3 26 26 H 1.09000 * 109.47118 * 305.58610 * 1 2 3 27 27 H 1.09006 * 109.46663 * 65.58450 * 1 2 3 28 28 H 1.09002 * 109.47194 * 240.00072 * 2 1 3 29 29 H 1.08995 * 109.46884 * 119.99487 * 2 1 3 30 30 H 1.08999 * 109.47019 * 210.00612 * 10 9 7 31 31 H 1.09001 * 109.47650 * 330.00645 * 10 9 7 32 32 H 1.08996 * 109.47425 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.47342 * 299.99824 * 11 10 9 34 34 H 1.08999 * 109.47484 * 59.99589 * 11 10 9 35 35 H 1.08998 * 109.47038 * 209.99628 * 12 9 7 36 36 H 1.09006 * 109.46743 * 329.99529 * 12 9 7 37 37 H 0.96997 * 120.00243 * 179.97438 * 16 15 13 38 38 H 1.09006 * 110.32625 * 118.89655 * 21 5 3 39 39 H 1.09001 * 110.32392 * 241.00326 * 21 5 3 40 40 H 1.09001 * 110.41541 * 142.63154 * 22 21 5 41 41 H 1.09000 * 110.41515 * 265.07952 * 22 21 5 42 42 H 1.08996 * 109.47098 * 65.08635 * 24 23 3 43 43 H 1.09006 * 109.46934 * 185.08778 * 24 23 3 44 44 H 1.09002 * 109.47353 * 305.08251 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6393 1.9884 0.8541 5 6 1.6571 2.1490 -1.3182 6 1 1.4956 1.4151 -2.1079 7 6 0.4199 2.9870 -1.1227 8 8 -0.1197 3.0276 -0.0373 9 7 -0.0874 3.6905 -2.1544 10 6 0.5641 3.6409 -3.4656 11 6 -0.0305 2.4955 -4.2874 12 6 -1.2898 4.5056 -1.9642 13 6 -0.8923 5.8958 -1.5396 14 1 0.1516 6.1473 -1.4235 15 6 -1.8612 6.8470 -1.3004 16 7 -3.1324 6.5411 -1.4423 17 14 -1.3685 8.5705 -0.7748 18 1 -0.5156 9.1834 -1.8247 19 1 -2.5872 9.3970 -0.5831 20 1 -0.6110 8.5016 0.5006 21 6 2.8646 3.0471 -1.6571 22 6 3.8753 2.8084 -0.5149 23 7 3.5253 1.4669 0.0199 24 6 4.0362 1.2956 1.3865 25 1 -0.3633 -1.0228 0.1000 26 1 -0.3633 0.5980 0.8357 27 1 -0.3633 0.4248 -0.9358 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 0.4029 4.5843 -3.9872 31 1 1.6336 3.4766 -3.3340 32 1 0.4538 2.4588 -5.2632 33 1 0.1306 1.5522 -3.7658 34 1 -1.1000 2.6598 -4.4190 35 1 -1.8460 4.5566 -2.9002 36 1 -1.9157 4.0554 -1.1936 37 1 -3.8141 7.2103 -1.2737 38 1 3.2976 2.7544 -2.6137 39 1 2.5621 4.0940 -1.6838 40 1 4.8941 2.8086 -0.9024 41 1 3.7615 3.5681 0.2585 42 1 3.7736 0.3024 1.7508 43 1 5.1205 1.4074 1.3857 44 1 3.5938 2.0500 2.0372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601009921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:50 Heat of formation + Delta-G solvation = -60.551655 kcal Electronic energy + Delta-G solvation = -22274.577261 eV Core-core repulsion = 19225.655048 eV Total energy + Delta-G solvation = -3048.922213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56764 -39.21028 -36.99346 -34.99636 -34.37012 -33.28517 -31.56356 -29.47987 -28.61284 -26.91605 -24.99139 -24.63460 -23.68621 -22.16002 -21.10278 -19.91851 -18.59936 -17.80817 -17.36006 -16.82139 -16.49353 -16.00454 -15.56081 -15.36861 -15.16956 -14.81726 -14.43132 -14.24630 -14.17192 -13.90126 -13.50796 -13.36442 -13.22078 -13.09818 -12.82317 -12.73402 -12.61366 -12.41575 -12.36829 -12.21545 -12.13101 -12.01211 -11.74939 -11.66241 -11.58241 -11.41874 -10.66087 -10.46176 -9.54913 -9.41629 -8.23796 -6.38833 1.33453 1.37561 1.44939 1.85361 2.27297 2.41459 2.99958 3.05414 3.47430 3.65627 3.77970 4.05964 4.13790 4.21705 4.30382 4.36002 4.41398 4.43522 4.53971 4.58560 4.62150 4.69717 4.73025 4.89047 4.91698 4.95104 4.96266 4.98875 5.04909 5.09491 5.11802 5.13545 5.21625 5.26646 5.39166 5.42429 5.57296 5.80146 5.88081 6.02109 6.05631 6.68762 6.82858 7.27099 7.51294 8.82918 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.005922 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.644359 B = 4727.382334 C = 5045.983497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C 0.074 3.926 4 H 0.034 0.966 5 C -0.099 4.099 6 H 0.122 0.878 7 C 0.506 3.494 8 O -0.591 6.591 9 N -0.601 5.601 10 C 0.091 3.909 11 C -0.161 4.161 12 C 0.264 3.736 13 C -0.541 4.541 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.259 1.259 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.115 4.115 22 C 0.032 3.968 23 N -0.506 5.506 24 C 0.012 3.988 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.020 0.980 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.116 0.884 39 H 0.058 0.942 40 H 0.112 0.888 41 H 0.027 0.973 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.397 -11.657 -3.346 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.035 4.035 4 H 0.052 0.948 5 C -0.121 4.121 6 H 0.139 0.861 7 C 0.294 3.706 8 O -0.472 6.472 9 N -0.331 5.331 10 C -0.031 4.031 11 C -0.219 4.219 12 C 0.142 3.858 13 C -0.580 4.580 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.183 1.183 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.153 4.153 22 C -0.096 4.096 23 N -0.229 5.229 24 C -0.137 4.137 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.130 0.870 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 15.172 -11.982 -3.111 19.582 hybrid contribution -1.082 1.940 1.129 2.492 sum 14.090 -10.043 -1.982 17.416 Atomic orbital electron populations 1.21687 0.96433 1.01362 1.00627 1.21339 0.94417 0.93936 1.03435 1.22582 0.88370 0.97078 0.95457 0.94752 1.22091 0.92133 0.97618 1.00223 0.86052 1.21060 0.86126 0.79921 0.83461 1.90616 1.63052 1.66481 1.27074 1.48209 1.28600 1.45416 1.10924 1.21929 0.98475 1.00131 0.82562 1.22152 1.00901 0.97866 1.01000 1.18662 0.82972 0.88950 0.95174 1.21660 0.92997 0.96654 1.46672 0.93010 1.25853 0.94726 1.03379 0.95168 1.70048 1.00614 1.36215 1.49932 0.85505 0.77914 0.78750 0.78873 1.18307 1.20245 1.20520 1.22430 0.93376 0.98561 1.00957 1.23197 1.00773 0.89431 0.96163 1.65431 1.07586 1.28390 1.21482 1.22588 1.01457 1.01508 0.88120 0.90851 0.95031 0.94691 0.89614 0.90954 0.91167 0.87703 0.88468 0.92227 0.94401 0.96224 0.98784 0.92418 0.86538 0.92361 0.86959 0.95432 0.90265 0.89276 0.96838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 8.78 71.98 0.63 -3.55 16 2 C -0.09 -2.33 5.56 30.60 0.17 -2.16 16 3 C 0.07 2.18 1.73 45.07 0.08 2.25 16 4 H 0.03 1.31 6.65 -2.39 -0.02 1.30 16 5 C -0.10 -2.96 1.62 -10.64 -0.02 -2.97 16 6 H 0.12 3.08 6.80 -2.39 -0.02 3.06 16 7 C 0.51 21.42 5.91 87.66 0.52 21.93 16 8 O -0.59 -31.08 13.95 -3.03 -0.04 -31.12 16 9 N -0.60 -25.92 2.45 -826.16 -2.03 -27.95 16 10 C 0.09 2.84 5.69 86.38 0.49 3.33 16 11 C -0.16 -4.09 10.22 71.98 0.74 -3.35 16 12 C 0.26 14.58 5.16 85.63 0.44 15.02 16 13 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 14 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 15 C 0.01 0.45 5.46 84.65 0.46 0.91 16 16 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 17 Si 0.97 45.54 29.54 68.60 2.03 47.56 16 18 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 C -0.12 -2.85 4.70 31.49 0.15 -2.70 16 22 C 0.03 0.75 6.49 86.44 0.56 1.31 16 23 N -0.51 -12.11 5.34 -882.57 -4.72 -16.82 16 24 C 0.01 0.25 9.41 127.69 1.20 1.45 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.03 1.10 7.75 -2.39 -0.02 1.09 16 27 H 0.03 1.11 7.07 -2.38 -0.02 1.10 16 28 H 0.09 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.07 1.62 7.49 -2.39 -0.02 1.60 16 30 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 31 H 0.11 2.59 4.35 -2.39 -0.01 2.57 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.41 7.21 -2.39 -0.02 1.40 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 36 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.12 2.03 7.66 -2.38 -0.02 2.01 16 39 H 0.06 1.71 7.20 -2.39 -0.02 1.69 16 40 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.03 0.74 7.98 -2.39 -0.02 0.72 16 42 H 0.08 1.48 7.50 -2.39 -0.02 1.46 16 43 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.01 0.32 7.97 -2.39 -0.02 0.30 16 Total: -1.00 -73.80 340.10 2.14 -71.66 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.95 Total: 13.53 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.66 Total: -0.05 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -6.46 Total: -101.59 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.04 Total: -31.12 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -73.80 2.14 -71.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601009921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.106 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds