Wall clock time and date at job start Mon Mar 30 2020 05:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47454 * 2 1 4 4 H 1.08995 * 110.36575 * 56.70022 * 3 2 1 5 5 C 1.54379 * 110.41040 * 294.35088 * 3 2 1 6 6 H 1.09007 * 110.32523 * 336.24868 * 5 3 2 7 7 C 1.50699 * 110.32323 * 98.35448 * 5 3 2 8 8 O 1.21282 * 120.00256 * 359.97438 * 7 5 3 9 9 N 1.34774 * 119.99702 * 180.02562 * 7 5 3 10 10 C 1.46498 * 120.00474 * 359.97438 * 9 7 5 11 11 C 1.46504 * 119.99793 * 180.02562 * 9 7 5 12 12 H 1.08995 * 109.47252 * 359.97438 * 11 9 7 13 13 C 1.53008 * 109.47120 * 119.99678 * 11 9 7 14 14 C 1.50699 * 109.47294 * 239.99598 * 11 9 7 15 15 H 1.08006 * 119.99594 * 0.02562 * 14 11 9 16 16 C 1.37874 * 120.00165 * 179.97438 * 14 11 9 17 17 N 1.31516 * 119.99967 * 180.02562 * 16 14 11 18 18 Si 1.86794 * 120.00089 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.47007 * 90.00225 * 18 16 14 20 20 H 1.48497 * 109.47182 * 209.99910 * 18 16 14 21 21 H 1.48495 * 109.47131 * 330.00305 * 18 16 14 22 22 C 1.54263 * 105.06016 * 217.25051 * 5 3 2 23 23 C 1.54380 * 105.05720 * 0.02562 * 22 5 3 24 24 N 1.48555 * 104.59777 * 23.85218 * 23 22 5 25 25 C 1.46898 * 110.99903 * 200.96058 * 24 23 22 26 26 H 1.09005 * 109.47766 * 185.58694 * 1 2 3 27 27 H 1.09000 * 109.46945 * 305.58661 * 1 2 3 28 28 H 1.09001 * 109.47209 * 65.58394 * 1 2 3 29 29 H 1.09006 * 109.47026 * 239.99484 * 2 1 3 30 30 H 1.08998 * 109.46634 * 120.00345 * 2 1 3 31 31 H 1.09007 * 109.46811 * 90.00208 * 10 9 7 32 32 H 1.08999 * 109.47448 * 210.00559 * 10 9 7 33 33 H 1.08998 * 109.46941 * 330.00553 * 10 9 7 34 34 H 1.08997 * 109.46806 * 180.02562 * 13 11 9 35 35 H 1.08993 * 109.46824 * 299.99941 * 13 11 9 36 36 H 1.08995 * 109.47032 * 59.99898 * 13 11 9 37 37 H 0.97003 * 119.99935 * 180.02562 * 17 16 14 38 38 H 1.09000 * 110.32109 * 118.89278 * 22 5 3 39 39 H 1.08993 * 110.32526 * 241.00179 * 22 5 3 40 40 H 1.08999 * 110.41063 * 142.63458 * 23 22 5 41 41 H 1.09005 * 110.40598 * 264.95382 * 23 22 5 42 42 H 1.09003 * 109.47336 * 180.50391 * 25 24 23 43 43 H 1.09006 * 109.47357 * 300.49980 * 25 24 23 44 44 H 1.09004 * 109.47511 * 60.50141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6376 1.9871 0.8540 5 6 1.6571 2.1489 -1.3182 6 1 1.4976 1.4153 -2.1085 7 6 0.4183 2.9847 -1.1233 8 8 -0.1224 3.0239 -0.0384 9 7 -0.0893 3.6878 -2.1550 10 6 0.5635 3.6402 -3.4657 11 6 -1.2932 4.5008 -1.9655 12 1 -1.6327 4.4122 -0.9335 13 6 -0.9737 5.9650 -2.2738 14 6 -2.3773 4.0170 -2.8937 15 1 -2.1885 3.1867 -3.5581 16 6 -3.6105 4.6337 -2.8941 17 7 -4.5567 4.2111 -3.7039 18 14 -3.9377 6.0683 -1.7435 19 1 -3.5787 7.3393 -2.4226 20 1 -5.3769 6.0916 -1.3783 21 1 -3.1176 5.9147 -0.5151 22 6 2.8634 3.0494 -1.6554 23 6 3.8739 2.8106 -0.5130 24 7 3.5255 1.4688 0.0207 25 6 4.0358 1.2971 1.3874 26 1 -0.3635 -1.0228 0.1000 27 1 -0.3633 0.5980 0.8357 28 1 -0.3634 0.4248 -0.9358 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 0.1418 2.8237 -4.0520 32 1 0.4012 4.5835 -3.9870 33 1 1.6331 3.4776 -3.3331 34 1 -1.8693 6.5699 -2.1323 35 1 -0.1896 6.3149 -1.6024 36 1 -0.6344 6.0533 -3.3058 37 1 -5.4242 4.6452 -3.7044 38 1 3.2978 2.7578 -2.6117 39 1 2.5591 4.0956 -1.6819 40 1 4.8928 2.8130 -0.9001 41 1 3.7600 3.5706 0.2601 42 1 3.7746 0.3031 1.7507 43 1 5.1199 1.4105 1.3875 44 1 3.5917 2.0502 2.0385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601038369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:10 Heat of formation + Delta-G solvation = -24.838213 kcal Electronic energy + Delta-G solvation = -22307.947339 eV Core-core repulsion = 19260.573777 eV Total energy + Delta-G solvation = -3047.373562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28995 -38.03901 -35.52961 -33.27798 -33.16012 -32.05991 -30.19050 -27.78976 -26.27515 -25.92832 -25.09911 -23.30445 -21.73012 -21.05669 -19.74365 -18.33076 -16.91999 -16.35742 -15.93744 -15.68239 -15.00325 -14.67948 -14.34406 -14.18903 -13.76438 -13.58593 -13.02227 -12.78260 -12.70580 -12.49230 -12.26725 -12.18777 -11.90817 -11.76248 -11.64730 -11.37693 -11.24607 -11.13033 -11.00158 -10.89965 -10.68572 -10.52865 -10.33987 -10.14455 -9.66044 -9.34112 -8.95974 -8.64360 -8.53261 -7.71431 -6.15101 -4.15474 3.21874 3.26515 3.35834 3.38208 3.67010 4.06590 4.34321 4.52829 4.68966 4.94859 5.13677 5.17670 5.24789 5.29698 5.36489 5.41851 5.49386 5.62940 5.65892 5.72907 5.76252 5.78187 5.93401 5.94964 5.98966 6.04791 6.18786 6.21349 6.22583 6.25920 6.32535 6.41454 6.48331 6.65242 6.80937 6.82907 6.99649 7.12402 7.35345 7.62764 8.19421 8.47876 8.84886 8.92319 9.46160 10.97726 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027433 B = 0.005586 C = 0.005280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.431209 B = 5011.038230 C = 5302.119719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C 0.075 3.925 4 H 0.075 0.925 5 C -0.108 4.108 6 H 0.102 0.898 7 C 0.514 3.486 8 O -0.550 6.550 9 N -0.585 5.585 10 C 0.078 3.922 11 C 0.229 3.771 12 H 0.062 0.938 13 C -0.161 4.161 14 C -0.526 4.526 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.264 1.264 22 C -0.116 4.116 23 C 0.033 3.967 24 N -0.514 5.514 25 C 0.014 3.986 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.032 0.968 36 H 0.056 0.944 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.778 -3.539 4.618 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.033 4.033 4 H 0.093 0.907 5 C -0.130 4.130 6 H 0.120 0.880 7 C 0.300 3.700 8 O -0.429 6.429 9 N -0.316 5.316 10 C -0.066 4.066 11 C 0.127 3.873 12 H 0.080 0.920 13 C -0.219 4.219 14 C -0.564 4.564 15 H 0.096 0.904 16 C -0.127 4.127 17 N -0.533 5.533 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.189 1.189 22 C -0.154 4.154 23 C -0.095 4.095 24 N -0.238 5.238 25 C -0.134 4.134 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 16.529 -3.912 4.801 17.651 hybrid contribution -0.700 1.484 0.804 1.828 sum 15.830 -2.427 5.605 16.967 Atomic orbital electron populations 1.21751 0.94792 1.00958 1.03225 1.21381 0.95999 0.94694 1.01863 1.22660 0.86814 0.96786 0.97079 0.90737 1.22068 0.93658 0.97820 0.99477 0.87970 1.20223 0.85245 0.80105 0.84412 1.90619 1.61861 1.64841 1.25570 1.47807 1.28159 1.46287 1.09316 1.21796 0.96202 1.03005 0.85595 1.19277 0.82466 0.86093 0.99434 0.92048 1.22459 0.99629 0.99066 1.00756 1.21155 0.95316 1.17993 1.21919 0.90374 1.24862 0.95790 0.96994 0.95083 1.69876 1.04313 1.41550 1.37541 0.86926 0.76846 0.82771 0.82197 1.20437 1.22145 1.18879 1.22366 0.94205 0.99793 0.99008 1.23101 0.99527 0.90115 0.96778 1.65343 1.09558 1.28257 1.20608 1.22493 1.00265 1.01465 0.89216 0.93182 0.91884 0.92563 0.91625 0.92338 0.92887 0.90919 0.91879 0.93183 0.94932 0.92520 0.92459 0.90040 0.90626 0.90012 0.93787 0.91242 0.91523 0.95325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.77 37.16 0.33 -1.94 16 2 C -0.10 -1.35 5.56 -26.73 -0.15 -1.50 16 3 C 0.07 1.07 1.73 -66.06 -0.11 0.95 16 4 H 0.07 1.25 6.65 -51.93 -0.35 0.91 16 5 C -0.11 -1.60 1.62 -90.39 -0.15 -1.75 16 6 H 0.10 1.46 7.74 -51.93 -0.40 1.05 16 7 C 0.51 9.98 5.91 -10.99 -0.06 9.91 16 8 O -0.55 -12.55 13.69 5.56 0.08 -12.47 16 9 N -0.59 -11.82 2.75 -175.26 -0.48 -12.30 16 10 C 0.08 1.25 9.25 59.85 0.55 1.81 16 11 C 0.23 5.50 2.23 -69.08 -0.15 5.35 16 12 H 0.06 1.65 5.95 -51.93 -0.31 1.34 16 13 C -0.16 -3.45 8.65 37.16 0.32 -3.13 16 14 C -0.53 -14.50 8.95 -34.44 -0.31 -14.81 16 15 H 0.08 2.32 7.89 -52.48 -0.41 1.91 16 16 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 17 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 18 Si 0.88 21.90 24.37 -169.99 -4.14 17.75 16 19 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 20 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 22 C -0.12 -1.39 4.70 -25.35 -0.12 -1.51 16 23 C 0.03 0.37 6.49 -2.18 -0.01 0.36 16 24 N -0.51 -6.31 5.35 -230.33 -1.23 -7.54 16 25 C 0.01 0.15 9.41 60.06 0.57 0.72 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 28 H 0.06 0.96 7.06 -51.93 -0.37 0.60 16 29 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.06 0.71 7.49 -51.93 -0.39 0.32 16 31 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.07 1.17 6.42 -51.93 -0.33 0.83 16 33 H 0.06 0.80 4.34 -51.93 -0.23 0.57 16 34 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 39 H 0.08 0.96 7.20 -51.93 -0.37 0.59 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.52 7.98 -51.93 -0.41 0.10 16 42 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.31 7.97 -51.93 -0.41 -0.10 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -31.44 325.98 -6.90 -38.34 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.41 Total: 0.99 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 0.60 Total: -3.49 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: -0.94 Total: -46.04 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.44 -6.90 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601038369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.500 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds