Wall clock time and date at job start Mon Mar 30 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46836 * 2 1 4 4 C 1.50704 * 109.47018 * 240.00358 * 2 1 3 5 5 H 1.08000 * 119.99617 * 239.99233 * 4 2 1 6 6 C 1.37877 * 120.00309 * 60.00167 * 4 2 1 7 7 N 1.31514 * 119.99765 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00154 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47098 * 119.99531 * 8 6 4 11 11 H 1.48500 * 109.47075 * 239.99495 * 8 6 4 12 12 C 1.52992 * 109.47400 * 119.99990 * 2 1 3 13 13 N 1.46501 * 109.47160 * 300.00512 * 12 2 1 14 14 C 1.34777 * 119.99993 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00167 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.47335 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47118 * 300.00009 * 17 16 14 19 19 N 1.46896 * 109.47501 * 60.00159 * 17 16 14 20 20 C 1.53003 * 109.47157 * 180.02562 * 17 16 14 21 21 C 1.53001 * 117.51964 * 106.28220 * 20 17 16 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 17 23 23 H 1.08996 * 109.47741 * 299.99717 * 1 2 3 24 24 H 1.08996 * 109.47243 * 60.00416 * 1 2 3 25 25 H 1.09005 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47028 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47091 * 300.00468 * 3 2 1 28 28 H 1.09004 * 109.46662 * 60.00026 * 3 2 1 29 29 H 0.97000 * 120.00228 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47350 * 180.02562 * 12 2 1 31 31 H 1.09005 * 109.46997 * 60.00319 * 12 2 1 32 32 H 0.96999 * 120.00273 * 359.97438 * 13 12 2 33 33 H 1.09007 * 109.46525 * 60.00013 * 16 14 13 34 34 H 1.09004 * 109.46807 * 300.00843 * 16 14 13 35 35 H 1.09004 * 109.47021 * 300.00091 * 18 17 16 36 36 H 1.08998 * 109.46932 * 59.99757 * 18 17 16 37 37 H 1.09001 * 109.47291 * 180.02562 * 18 17 16 38 38 H 1.00900 * 110.99773 * 296.04905 * 19 17 16 39 39 H 1.00895 * 111.00087 * 59.99665 * 19 17 16 40 40 H 1.09002 * 115.54973 * 320.58003 * 20 17 16 41 41 H 1.09001 * 117.49733 * 214.97413 * 21 20 17 42 42 H 1.08995 * 117.49577 * 359.97438 * 21 20 17 43 43 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 44 44 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1484 -2.2855 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1472 -0.1855 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5742 -1.4775 3.7807 16 6 1.3749 0.2192 4.9000 17 6 1.8849 -0.5021 6.1491 18 6 1.3744 -1.9445 6.1493 19 7 3.3538 -0.5025 6.1490 20 6 1.3748 0.2191 7.3984 21 6 0.2550 -0.4534 8.1952 22 6 1.6782 -0.4187 8.7557 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 0.7082 1.1610 -3.4844 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2491 32 1 0.9942 0.7581 2.3564 33 1 0.2849 0.2199 4.8998 34 1 1.7389 1.2467 4.9000 35 1 0.2844 -1.9441 6.1495 36 1 1.7374 -2.4584 5.2593 37 1 1.7374 -2.4582 7.0395 38 1 3.7152 -1.0288 5.3676 39 1 3.7157 0.4393 6.1489 40 1 1.3698 1.3077 7.3437 41 1 -0.4867 0.1928 8.6646 42 1 -0.1188 -1.4096 7.8291 43 1 2.2409 -1.3523 8.7585 44 1 1.8732 0.2504 9.5938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687107830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:00 Heat of formation + Delta-G solvation = -24.403604 kcal Electronic energy + Delta-G solvation = -21354.313373 eV Core-core repulsion = 18306.958658 eV Total energy + Delta-G solvation = -3047.354716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.11062 -38.26482 -36.44314 -34.03589 -33.33578 -31.04733 -29.33598 -27.91417 -25.78174 -25.60613 -24.88217 -23.46838 -22.36137 -20.16668 -18.97807 -18.60188 -17.10356 -16.10356 -15.82452 -15.41134 -15.37081 -15.07939 -14.61384 -14.19075 -13.79724 -13.34275 -13.15638 -12.89513 -12.69689 -12.23780 -12.12104 -11.73468 -11.42931 -11.35621 -11.24592 -11.12795 -10.89775 -10.85965 -10.69218 -10.43523 -10.37438 -10.23791 -10.21488 -9.68920 -9.51165 -9.24405 -8.82863 -8.56292 -8.47106 -8.34813 -6.06250 -4.16473 2.94301 3.24427 3.33199 3.37508 3.62020 3.76484 4.36712 4.59170 4.66223 4.78687 4.97641 5.02968 5.11005 5.20707 5.32293 5.39500 5.54308 5.61664 5.71560 5.84864 5.96054 6.00823 6.11998 6.17180 6.26443 6.27251 6.45255 6.52108 6.73112 6.76650 6.87622 6.96152 6.97514 7.29735 7.37090 7.50405 7.65317 7.72536 7.95847 7.98585 8.10209 8.33944 8.64240 8.84605 9.49751 10.95205 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045424 B = 0.003631 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.263675 B = 7709.649821 C = 7883.759579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.131 3.869 13 N -0.714 5.714 14 C 0.504 3.496 15 O -0.550 6.550 16 C -0.174 4.174 17 C 0.170 3.830 18 C -0.156 4.156 19 N -0.839 5.839 20 C -0.144 4.144 21 C -0.186 4.186 22 C -0.160 4.160 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.398 0.602 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.360 0.640 39 H 0.330 0.670 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.688 1.606 16.486 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.290 3.710 15 O -0.430 6.430 16 C -0.216 4.216 17 C 0.076 3.924 18 C -0.213 4.213 19 N -0.373 5.373 20 C -0.163 4.163 21 C -0.223 4.223 22 C -0.197 4.197 23 H 0.024 0.976 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.180 0.820 39 H 0.141 0.859 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.314 0.610 17.053 17.114 hybrid contribution -0.160 0.659 -1.893 2.011 sum -1.474 1.269 15.159 15.283 Atomic orbital electron populations 1.21829 0.97766 0.99167 1.00072 1.18359 0.92787 0.92737 0.90639 1.21829 0.98540 0.98377 1.00061 1.21026 1.31454 1.12108 0.89889 0.92389 1.24885 0.94836 0.94917 0.98900 1.69810 1.36683 1.22796 1.23167 0.86513 0.78665 0.79762 0.82946 1.19733 1.21030 1.21039 1.21720 0.98088 0.95805 0.83520 1.46386 1.52270 1.31574 1.06170 1.20570 0.80744 0.84710 0.84933 1.90522 1.39159 1.26790 1.86506 1.22575 1.03484 1.00835 0.94696 1.19867 0.88394 0.94731 0.89412 1.22181 0.99758 0.95299 1.04058 1.58967 1.05640 1.19216 1.53480 1.22218 1.03409 0.98206 0.92450 1.23141 0.91942 1.02984 1.04256 1.22788 0.98015 1.03103 0.95801 0.97557 0.89576 0.95455 0.95479 0.89570 0.97591 0.93034 0.92740 0.92716 0.76723 0.88820 0.89430 0.92856 0.89514 0.92409 0.82032 0.85864 0.88397 0.89243 0.88134 0.88313 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.40 9.35 55.43 0.52 -22.88 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.70 4.50 -4.05 -0.02 2.68 16 13 N -0.71 -12.04 4.96 -60.30 -0.30 -12.34 16 14 C 0.50 7.96 7.34 -10.98 -0.08 7.88 16 15 O -0.55 -10.11 11.56 5.56 0.06 -10.05 16 16 C -0.17 -2.07 4.92 -27.89 -0.14 -2.20 16 17 C 0.17 2.00 0.76 -131.60 -0.10 1.90 16 18 C -0.16 -1.99 7.09 37.16 0.26 -1.73 16 19 N -0.84 -10.56 8.77 0.74 0.01 -10.55 16 20 C -0.14 -1.45 5.28 -90.61 -0.48 -1.93 16 21 C -0.19 -1.69 9.65 -26.73 -0.26 -1.95 16 22 C -0.16 -1.53 9.83 -26.73 -0.26 -1.80 16 23 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 24 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 6.14 6.16 -40.82 -0.25 5.89 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.62 6.74 -51.93 -0.35 0.27 16 36 H 0.09 1.35 5.51 -51.93 -0.29 1.06 16 37 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 38 H 0.36 5.32 6.38 -39.29 -0.25 5.07 16 39 H 0.33 3.72 9.00 -39.29 -0.35 3.36 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.94 5.89 -51.93 -0.31 0.63 16 43 H 0.10 1.04 7.28 -51.93 -0.38 0.67 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -26.64 333.81 -7.84 -34.48 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -7.23 Total: 13.68 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.92 Total: -12.92 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.23 Total: -45.77 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.06 Total: -10.05 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -26.64 -7.84 -34.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687107830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.080 kcal (2) G-P(sol) polarization free energy of solvation -26.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds