Wall clock time and date at job start Mon Mar 30 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46836 * 2 1 4 4 C 1.50704 * 109.47018 * 240.00358 * 2 1 3 5 5 H 1.08000 * 119.99617 * 239.99233 * 4 2 1 6 6 C 1.37877 * 120.00309 * 60.00167 * 4 2 1 7 7 N 1.31514 * 119.99765 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00154 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47098 * 119.99531 * 8 6 4 11 11 H 1.48500 * 109.47075 * 239.99495 * 8 6 4 12 12 C 1.52992 * 109.47400 * 119.99990 * 2 1 3 13 13 N 1.46501 * 109.47160 * 300.00512 * 12 2 1 14 14 C 1.34777 * 119.99993 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00265 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00167 * 179.97438 * 14 13 12 17 17 C 1.52992 * 109.47335 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47118 * 300.00009 * 17 16 14 19 19 N 1.46896 * 109.47501 * 60.00159 * 17 16 14 20 20 C 1.53003 * 109.47157 * 180.02562 * 17 16 14 21 21 C 1.53001 * 117.51964 * 106.28220 * 20 17 16 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 17 23 23 H 1.08996 * 109.47741 * 299.99717 * 1 2 3 24 24 H 1.08996 * 109.47243 * 60.00416 * 1 2 3 25 25 H 1.09005 * 109.46785 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47028 * 179.97438 * 3 2 1 27 27 H 1.09003 * 109.47091 * 300.00468 * 3 2 1 28 28 H 1.09004 * 109.46662 * 60.00026 * 3 2 1 29 29 H 0.97000 * 120.00228 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47350 * 180.02562 * 12 2 1 31 31 H 1.09005 * 109.46997 * 60.00319 * 12 2 1 32 32 H 0.96999 * 120.00273 * 359.97438 * 13 12 2 33 33 H 1.09007 * 109.46525 * 60.00013 * 16 14 13 34 34 H 1.09004 * 109.46807 * 300.00843 * 16 14 13 35 35 H 1.09004 * 109.47021 * 300.00091 * 18 17 16 36 36 H 1.08998 * 109.46932 * 59.99757 * 18 17 16 37 37 H 1.09001 * 109.47291 * 180.02562 * 18 17 16 38 38 H 1.00900 * 110.99773 * 296.04905 * 19 17 16 39 39 H 1.00895 * 111.00087 * 59.99665 * 19 17 16 40 40 H 1.09002 * 115.54973 * 320.58003 * 20 17 16 41 41 H 1.09001 * 117.49733 * 214.97413 * 21 20 17 42 42 H 1.08995 * 117.49577 * 359.97438 * 21 20 17 43 43 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 44 44 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 3.1484 -2.2855 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1472 -0.1855 -4.8161 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6694 15 8 2.5742 -1.4775 3.7807 16 6 1.3749 0.2192 4.9000 17 6 1.8849 -0.5021 6.1491 18 6 1.3744 -1.9445 6.1493 19 7 3.3538 -0.5025 6.1490 20 6 1.3748 0.2191 7.3984 21 6 0.2550 -0.4534 8.1952 22 6 1.6782 -0.4187 8.7557 23 1 -0.3634 0.5137 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6765 1.9564 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 0.7082 1.1610 -3.4844 30 1 3.1300 -0.7208 1.2494 31 1 1.6767 -1.7489 1.2491 32 1 0.9942 0.7581 2.3564 33 1 0.2849 0.2199 4.8998 34 1 1.7389 1.2467 4.9000 35 1 0.2844 -1.9441 6.1495 36 1 1.7374 -2.4584 5.2593 37 1 1.7374 -2.4582 7.0395 38 1 3.7152 -1.0288 5.3676 39 1 3.7157 0.4393 6.1489 40 1 1.3698 1.3077 7.3437 41 1 -0.4867 0.1928 8.6646 42 1 -0.1188 -1.4096 7.8291 43 1 2.2409 -1.3523 8.7585 44 1 1.8732 0.2504 9.5938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687107830.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:00 Heat of formation + Delta-G solvation = -40.771856 kcal Electronic energy + Delta-G solvation = -21355.023154 eV Core-core repulsion = 18306.958658 eV Total energy + Delta-G solvation = -3048.064496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28782 -39.34997 -38.03942 -35.15271 -34.78448 -32.82770 -30.40453 -29.01361 -27.58289 -27.42224 -26.48596 -24.47981 -23.07307 -21.49742 -20.62944 -19.60947 -18.38676 -17.71527 -17.05961 -16.70343 -16.54056 -16.45380 -16.07968 -15.39567 -14.89605 -14.82927 -14.52510 -14.39366 -14.04942 -13.73905 -13.26420 -13.11437 -13.03072 -12.81334 -12.59050 -12.52698 -12.36465 -12.24132 -12.15653 -11.94575 -11.77208 -11.49695 -11.24792 -11.11793 -10.97538 -10.74367 -10.54293 -10.41620 -9.90514 -9.48852 -8.04349 -6.20103 1.39655 1.44155 1.53241 1.69679 2.32413 2.49337 2.96841 3.19358 3.71683 3.75234 3.80794 4.13034 4.17505 4.30253 4.35681 4.46160 4.50382 4.52749 4.67497 4.70543 4.83664 4.86929 4.98623 5.03190 5.03880 5.07210 5.10274 5.14650 5.17759 5.33054 5.39565 5.42716 5.50172 5.64143 5.65450 5.65701 6.13634 6.20375 6.39621 6.42235 6.68804 6.70474 6.84826 7.37401 7.47995 8.94575 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045424 B = 0.003631 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.263675 B = 7709.649821 C = 7883.759579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.149 3.851 13 N -0.711 5.711 14 C 0.502 3.498 15 O -0.577 6.577 16 C -0.163 4.163 17 C 0.169 3.831 18 C -0.152 4.152 19 N -0.843 5.843 20 C -0.147 4.147 21 C -0.178 4.178 22 C -0.164 4.164 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.260 0.740 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.407 0.593 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.347 0.653 39 H 0.338 0.662 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 2.801 18.002 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.025 3.975 13 N -0.362 5.362 14 C 0.290 3.710 15 O -0.458 6.458 16 C -0.205 4.205 17 C 0.075 3.925 18 C -0.210 4.210 19 N -0.376 5.376 20 C -0.165 4.165 21 C -0.215 4.215 22 C -0.201 4.201 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.244 0.756 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.164 0.836 39 H 0.150 0.850 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.153 1.827 18.595 18.808 hybrid contribution 0.116 0.242 -2.317 2.332 sum -2.037 2.069 16.278 16.535 Atomic orbital electron populations 1.21665 0.97165 0.98580 1.00394 1.18354 0.93197 0.93021 0.90422 1.21661 0.97848 0.97860 1.00385 1.21320 1.31633 1.12124 0.91683 0.93854 1.25447 0.95149 0.95592 1.00970 1.69910 1.37004 1.23314 1.23549 0.85722 0.78147 0.78747 0.80288 1.20037 1.20715 1.20706 1.21209 0.96877 0.94947 0.84440 1.46213 1.52727 1.31806 1.05471 1.21305 0.79878 0.84320 0.85461 1.90537 1.40234 1.28143 1.86885 1.22587 1.04560 1.01318 0.92056 1.19911 0.87874 0.94239 0.90446 1.22125 1.00474 0.95950 1.02407 1.58966 1.06363 1.19616 1.52696 1.22182 1.04089 0.98787 0.91468 1.23199 0.91912 1.02951 1.03485 1.22799 0.98446 1.02741 0.96087 0.94363 0.91988 0.96436 0.96386 0.92004 0.94372 0.93032 0.94446 0.94599 0.75577 0.86850 0.87052 0.91627 0.92572 0.92547 0.83564 0.84985 0.86888 0.87550 0.88555 0.89780 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.30 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -27.82 8.01 25.60 0.21 -27.61 16 5 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.48 5.15 84.65 0.44 1.91 16 7 N -0.90 -47.59 9.35 21.45 0.20 -47.39 16 8 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 12 C 0.15 6.16 4.50 86.38 0.39 6.54 16 13 N -0.71 -22.84 4.96 -463.07 -2.30 -25.14 16 14 C 0.50 15.12 7.34 87.66 0.64 15.77 16 15 O -0.58 -21.19 11.56 -3.04 -0.04 -21.23 16 16 C -0.16 -3.40 4.92 29.85 0.15 -3.25 16 17 C 0.17 3.62 0.76 3.53 0.00 3.62 16 18 C -0.15 -3.74 7.09 71.98 0.51 -3.23 16 19 N -0.84 -20.19 8.77 -151.57 -1.33 -21.52 16 20 C -0.15 -2.49 5.28 -10.79 -0.06 -2.55 16 21 C -0.18 -2.71 9.65 30.59 0.30 -2.41 16 22 C -0.16 -2.75 9.83 30.60 0.30 -2.45 16 23 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 24 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 25 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 3.01 6.07 -2.39 -0.01 3.00 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 29 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.41 11.41 6.16 -92.71 -0.57 10.84 16 33 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.06 1.41 6.74 -2.38 -0.02 1.39 16 36 H 0.06 1.75 5.51 -2.39 -0.01 1.73 16 37 H 0.06 1.36 6.96 -2.39 -0.02 1.35 16 38 H 0.35 10.15 6.38 -89.69 -0.57 9.58 16 39 H 0.34 7.00 9.00 -89.70 -0.81 6.19 16 40 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.55 5.89 -2.39 -0.01 1.54 16 43 H 0.08 1.67 7.28 -2.39 -0.02 1.65 16 44 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -57.73 333.81 1.64 -56.10 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.94 Total: 35.38 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 4.01 Total: -20.67 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -3.42 Total: -94.05 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.04 Total: -21.23 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -57.73 1.64 -56.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687107830.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.324 kcal (2) G-P(sol) polarization free energy of solvation -57.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds