Wall clock time and date at job start Mon Mar 30 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47389 * 2 1 4 4 C 1.50705 * 109.47414 * 239.99765 * 2 1 3 5 5 H 1.08003 * 119.99783 * 240.00064 * 4 2 1 6 6 C 1.37871 * 119.99599 * 59.99741 * 4 2 1 7 7 N 1.31511 * 120.00512 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47371 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47013 * 120.00087 * 8 6 4 11 11 H 1.48500 * 109.47425 * 240.00420 * 8 6 4 12 12 C 1.53004 * 109.47091 * 119.99726 * 2 1 3 13 13 N 1.46499 * 109.47383 * 300.00173 * 12 2 1 14 14 C 1.34774 * 120.00308 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00082 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00017 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47272 * 185.98956 * 16 14 13 18 18 C 1.52998 * 109.47442 * 179.00773 * 17 16 14 19 19 N 1.46900 * 109.47132 * 59.00614 * 17 16 14 20 20 C 1.53005 * 109.46918 * 299.01107 * 17 16 14 21 21 C 1.53003 * 117.51779 * 111.28399 * 20 17 16 22 22 C 1.52997 * 117.49640 * 179.91034 * 20 17 16 23 23 H 1.08996 * 109.47002 * 300.00334 * 1 2 3 24 24 H 1.08997 * 109.46876 * 60.00539 * 1 2 3 25 25 H 1.09005 * 109.46884 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47547 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46822 * 300.00281 * 3 2 1 28 28 H 1.09001 * 109.46995 * 59.99543 * 3 2 1 29 29 H 0.96999 * 120.00557 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47100 * 180.02562 * 12 2 1 31 31 H 1.09005 * 109.47299 * 60.00202 * 12 2 1 32 32 H 0.97000 * 119.99671 * 359.97438 * 13 12 2 33 33 H 1.09001 * 109.46962 * 65.99167 * 16 14 13 34 34 H 1.09003 * 109.47159 * 305.99158 * 16 14 13 35 35 H 1.09001 * 109.47367 * 179.97438 * 18 17 16 36 36 H 1.09001 * 109.47311 * 300.00203 * 18 17 16 37 37 H 1.09002 * 109.46789 * 59.99993 * 18 17 16 38 38 H 1.00900 * 111.00207 * 304.91651 * 19 17 16 39 39 H 1.00901 * 110.99849 * 68.87032 * 19 17 16 40 40 H 1.08992 * 115.54994 * 325.58086 * 20 17 16 41 41 H 1.08996 * 117.49795 * 214.96977 * 21 20 17 42 42 H 1.08998 * 117.49641 * 359.97438 * 21 20 17 43 43 H 1.09002 * 117.50373 * 359.97438 * 22 20 17 44 44 H 1.09003 * 117.50264 * 144.99813 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3214 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5741 -1.4774 3.7809 16 6 1.3749 0.2195 4.9000 17 6 2.0035 -0.4101 6.1447 18 6 1.5131 0.3275 7.3923 19 7 3.4665 -0.3085 6.0592 20 6 1.5988 -1.8831 6.2310 21 6 2.6918 -2.9306 6.0096 22 6 2.1319 -2.6941 7.4137 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.7095 1.1616 -3.4844 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2494 32 1 0.9943 0.7582 2.3564 33 1 0.2901 0.1283 4.9551 34 1 1.6488 1.2732 4.8480 35 1 1.9606 -0.1213 8.2792 36 1 1.8014 1.3769 7.3309 37 1 0.4276 0.2520 7.4558 38 1 3.8080 -0.7184 5.2028 39 1 3.7680 0.6505 6.1465 40 1 0.5970 -2.1172 5.8710 41 1 2.4090 -3.8539 5.5040 42 1 3.6994 -2.5704 5.8021 43 1 2.7714 -2.1784 8.1302 44 1 1.4809 -3.4618 7.8319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687107831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:03 Heat of formation + Delta-G solvation = -23.512140 kcal Electronic energy + Delta-G solvation = -21586.840976 eV Core-core repulsion = 18539.524917 eV Total energy + Delta-G solvation = -3047.316059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02822 -37.94840 -36.23536 -34.03159 -33.28435 -31.00444 -29.50398 -28.21418 -25.76979 -25.55698 -24.73653 -23.02751 -21.90178 -20.24953 -18.95753 -18.67118 -17.10356 -16.13345 -15.67778 -15.55976 -15.25141 -14.72995 -14.53415 -14.10869 -13.55005 -13.16389 -13.03988 -12.84287 -12.64864 -12.23155 -12.03910 -11.84128 -11.76628 -11.36092 -11.23233 -11.03258 -10.89615 -10.82352 -10.68805 -10.42451 -10.23895 -10.01952 -9.88671 -9.67291 -9.41602 -9.11931 -8.81292 -8.61416 -8.46282 -8.31131 -6.05161 -4.15294 3.03552 3.25013 3.33773 3.38212 3.74010 4.11553 4.37879 4.56025 4.76234 4.88429 5.05461 5.21772 5.31843 5.32778 5.46687 5.52214 5.57296 5.66928 5.78530 5.87150 5.99138 6.12171 6.21829 6.28317 6.30232 6.43066 6.47153 6.64828 6.74680 6.77952 6.89652 6.97751 7.00744 7.30955 7.33856 7.51667 7.65005 7.66514 7.97027 8.03747 8.12958 8.35416 8.70799 8.85953 9.50875 10.96257 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036158 B = 0.004041 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.203095 B = 6927.169621 C = 7278.715678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.133 3.867 13 N -0.718 5.718 14 C 0.500 3.500 15 O -0.538 6.538 16 C -0.174 4.174 17 C 0.166 3.834 18 C -0.137 4.137 19 N -0.841 5.841 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.185 4.185 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.085 0.915 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.396 0.604 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.359 0.641 39 H 0.330 0.670 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 1.019 15.934 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.011 3.989 13 N -0.368 5.368 14 C 0.286 3.714 15 O -0.416 6.416 16 C -0.216 4.216 17 C 0.072 3.928 18 C -0.195 4.195 19 N -0.377 5.377 20 C -0.153 4.153 21 C -0.169 4.169 22 C -0.222 4.222 23 H 0.024 0.976 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.104 0.896 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.231 0.769 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.179 0.821 39 H 0.142 0.858 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.218 -0.053 16.470 16.471 hybrid contribution -0.342 0.623 -1.932 2.059 sum -0.560 0.569 14.538 14.559 Atomic orbital electron populations 1.21821 0.97799 0.99118 1.00026 1.18365 0.92768 0.92742 0.90712 1.21820 0.98502 0.98389 1.00019 1.21023 1.31390 1.12068 0.89893 0.92421 1.24880 0.94847 0.94920 0.98880 1.69808 1.36756 1.22781 1.23132 0.86522 0.78657 0.79770 0.82983 1.19749 1.21047 1.21043 1.21674 0.97975 0.95732 0.83537 1.46393 1.52595 1.31652 1.06200 1.20559 0.81148 0.84958 0.84780 1.90639 1.38380 1.26073 1.86555 1.22603 1.03181 1.00840 0.94980 1.19914 0.87842 0.93286 0.91738 1.21822 1.00946 0.99279 0.97467 1.59078 1.09109 1.22893 1.46602 1.21981 0.98414 0.91502 1.03354 1.22603 0.99359 0.98559 0.96349 1.22935 1.04252 1.02768 0.92241 0.97580 0.89624 0.95499 0.95513 0.89616 0.97612 0.93058 0.92863 0.92847 0.76924 0.88894 0.89633 0.91539 0.92952 0.92217 0.82081 0.85818 0.88971 0.90375 0.87849 0.88928 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.05 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -13.12 8.01 -34.44 -0.28 -13.40 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.44 9.35 55.43 0.52 -22.92 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.75 4.50 -4.04 -0.02 2.73 16 13 N -0.72 -12.09 4.96 -60.29 -0.30 -12.39 16 14 C 0.50 7.84 7.24 -10.99 -0.08 7.76 16 15 O -0.54 -9.74 11.25 5.56 0.06 -9.68 16 16 C -0.17 -2.03 4.93 -27.88 -0.14 -2.17 16 17 C 0.17 1.90 0.77 -131.60 -0.10 1.80 16 18 C -0.14 -1.28 8.52 37.16 0.32 -0.97 16 19 N -0.84 -10.13 7.76 0.74 0.01 -10.12 16 20 C -0.13 -1.72 4.04 -90.62 -0.37 -2.09 16 21 C -0.13 -1.84 7.93 -26.73 -0.21 -2.05 16 22 C -0.18 -2.19 9.65 -26.73 -0.26 -2.45 16 23 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 24 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.40 6.14 6.16 -40.82 -0.25 5.89 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.64 7.29 -51.93 -0.38 0.26 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.36 5.13 5.31 -39.29 -0.21 4.93 16 39 H 0.33 3.44 8.93 -39.29 -0.35 3.09 16 40 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.10 1.56 6.30 -51.93 -0.33 1.24 16 43 H 0.09 1.09 7.61 -51.93 -0.40 0.69 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -26.62 334.66 -7.84 -34.45 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.45 Total: 13.22 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.70 Total: -13.19 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.23 Total: -45.44 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.62 -7.84 -34.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687107831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.941 kcal (2) G-P(sol) polarization free energy of solvation -26.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds