Wall clock time and date at job start Mon Mar 30 2020 05:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 C 1.52996 * 109.47118 * 120.00242 * 2 1 3 5 5 N 1.46901 * 109.47044 * 179.14103 * 4 2 1 6 6 C 1.46894 * 110.99991 * 286.73458 * 5 4 2 7 7 C 1.50699 * 109.47510 * 75.88192 * 6 5 4 8 8 H 1.07995 * 119.99949 * 5.37766 * 7 6 5 9 9 C 1.37877 * 120.00182 * 185.37790 * 7 6 5 10 10 N 1.31509 * 120.00015 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 119.99783 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46882 * 90.00239 * 11 9 7 13 13 H 1.48505 * 109.46757 * 209.99963 * 11 9 7 14 14 H 1.48499 * 109.47247 * 329.99779 * 11 9 7 15 15 C 1.46901 * 111.00260 * 162.77545 * 5 4 2 16 16 C 1.53001 * 109.47327 * 284.42626 * 15 5 4 17 17 H 1.08996 * 110.85263 * 311.24810 * 16 15 5 18 18 C 1.54786 * 110.83628 * 75.24252 * 16 15 5 19 19 C 1.51285 * 104.11935 * 143.12201 * 18 16 15 20 20 O 1.21275 * 124.94231 * 163.66607 * 19 18 16 21 21 N 1.34427 * 110.11517 * 343.41051 * 19 18 16 22 22 C 1.46500 * 124.34833 * 179.84258 * 21 19 18 23 23 C 1.46761 * 111.30132 * 359.81899 * 21 19 18 24 24 H 1.08996 * 109.46765 * 300.00304 * 1 2 3 25 25 H 1.08997 * 109.47170 * 60.00251 * 1 2 3 26 26 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47131 * 239.99651 * 2 1 3 28 28 H 1.09004 * 109.46807 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46951 * 299.99883 * 3 2 1 30 30 H 1.08993 * 109.47105 * 60.00270 * 3 2 1 31 31 H 1.08995 * 109.47522 * 59.13835 * 4 2 1 32 32 H 1.09004 * 109.46923 * 299.13469 * 4 2 1 33 33 H 1.09003 * 109.47211 * 195.88487 * 6 5 4 34 34 H 1.09000 * 109.46974 * 315.87731 * 6 5 4 35 35 H 0.96997 * 119.99801 * 179.97438 * 10 9 7 36 36 H 1.08997 * 109.47602 * 164.41954 * 15 5 4 37 37 H 1.09006 * 109.46604 * 44.42238 * 15 5 4 38 38 H 1.08993 * 110.61914 * 24.42380 * 18 16 15 39 39 H 1.08998 * 110.42439 * 261.72970 * 18 16 15 40 40 H 1.08999 * 109.46822 * 359.97100 * 22 21 19 41 41 H 1.09001 * 109.46760 * 119.96721 * 22 21 19 42 42 H 1.08995 * 109.46919 * 239.97222 * 22 21 19 43 43 H 1.08990 * 110.24819 * 136.02111 * 23 21 19 44 44 H 1.09003 * 110.24664 * 257.93537 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5089 -0.7393 1.2388 6 6 4.0167 -1.6905 0.2412 7 6 3.8707 -1.0988 -1.1370 8 1 3.5250 -0.0824 -1.2545 9 6 4.1786 -1.8550 -2.2481 10 7 4.0507 -1.3388 -3.4508 11 14 4.7773 -3.6127 -2.0448 12 1 3.6137 -4.5353 -2.0465 13 1 5.6854 -3.9592 -3.1676 14 1 5.5089 -3.7409 -0.7589 15 6 4.0412 -1.0424 2.5740 16 6 3.9099 0.1924 3.4679 17 1 4.2919 1.0795 2.9627 18 6 2.4425 0.3928 3.9180 19 6 2.5582 0.8980 5.3393 20 8 1.6675 1.4403 5.9584 21 7 3.7903 0.6533 5.8181 22 6 4.2414 1.0165 7.1637 23 6 4.6252 -0.0251 4.8198 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6642 -1.7444 1.2570 32 1 1.6894 -0.1986 2.1391 33 1 5.0687 -1.8969 0.4385 34 1 3.4472 -2.6179 0.3007 35 1 4.2677 -1.8706 -4.2324 36 1 5.0916 -1.3214 2.4918 37 1 3.4790 -1.8681 3.0103 38 1 1.9006 -0.5525 3.8921 39 1 1.9494 1.1337 3.2887 40 1 3.4288 1.5078 7.6990 41 1 4.5395 0.1169 7.7021 42 1 5.0913 1.6951 7.0912 43 1 5.6202 0.4190 4.7957 44 1 4.6930 -1.0894 5.0451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687178402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:19 Heat of formation + Delta-G solvation = -46.543301 kcal Electronic energy + Delta-G solvation = -21808.314952 eV Core-core repulsion = 18760.000187 eV Total energy + Delta-G solvation = -3048.314765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51366 -39.30892 -37.47664 -35.32252 -34.75383 -33.48467 -30.04933 -29.23198 -27.80354 -27.68628 -26.74688 -24.70795 -22.47242 -21.49827 -20.89788 -20.27992 -18.74837 -17.84383 -17.21087 -16.62447 -16.47794 -16.28938 -15.74079 -15.42475 -14.79373 -14.65869 -14.53627 -14.36930 -14.22735 -14.01131 -13.61701 -13.27332 -13.18559 -13.11818 -13.05859 -12.81855 -12.66182 -12.44512 -12.07999 -11.91760 -11.85160 -11.73487 -11.56969 -11.41047 -11.21291 -10.90970 -10.70067 -10.44626 -9.70052 -8.87598 -8.13225 -6.10153 1.38160 1.40645 1.48890 1.52428 2.09832 2.43153 3.17585 3.18964 3.40526 3.61625 3.95215 4.11650 4.24101 4.35607 4.38567 4.47728 4.54421 4.57938 4.67693 4.72406 4.74147 4.76794 4.80972 4.87353 4.89290 4.95176 4.97634 5.03798 5.13752 5.16483 5.22593 5.32390 5.35524 5.51870 5.57391 5.70392 5.76646 5.98276 6.07137 6.19222 6.55107 6.81582 6.99810 7.12827 7.49247 9.01416 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.005293 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.182692 B = 5288.307134 C = 6114.538856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.064 3.936 5 N -0.533 5.533 6 C 0.168 3.832 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.007 3.993 10 N -0.949 5.949 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.248 1.248 15 C 0.063 3.937 16 C -0.081 4.081 17 H 0.095 0.905 18 C -0.148 4.148 19 C 0.509 3.491 20 O -0.586 6.586 21 N -0.622 5.622 22 C 0.087 3.913 23 C 0.111 3.889 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.028 0.972 30 H 0.054 0.946 31 H 0.014 0.986 32 H 0.094 0.906 33 H 0.028 0.972 34 H -0.018 1.018 35 H 0.260 0.740 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 0.592 18.062 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.173 4.173 4 C -0.064 4.064 5 N -0.256 5.256 6 C 0.041 3.959 7 C -0.536 4.536 8 H 0.092 0.908 9 C -0.189 4.189 10 N -0.591 5.591 11 Si 0.756 3.244 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.172 1.172 15 C -0.066 4.066 16 C -0.101 4.101 17 H 0.114 0.886 18 C -0.187 4.187 19 C 0.298 3.702 20 O -0.467 6.467 21 N -0.355 5.355 22 C -0.054 4.054 23 C -0.011 4.011 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.000 1.000 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.121 0.879 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.151 1.304 18.183 18.266 hybrid contribution -0.108 -1.571 -0.533 1.663 sum 1.043 -0.267 17.649 17.682 Atomic orbital electron populations 1.21766 0.95327 1.01028 1.01475 1.21460 0.94582 0.97152 1.00100 1.21480 1.01151 0.95249 0.99394 1.22376 0.87386 0.97729 0.98866 1.61758 1.07917 1.51238 1.04702 1.20056 0.94735 0.89751 0.91342 1.21622 1.41286 1.01215 0.89508 0.90843 1.25687 0.96348 1.01809 0.95058 1.70035 1.51847 1.38702 0.98562 0.85974 0.78670 0.81338 0.78465 1.20393 1.21762 1.17192 1.22133 1.00928 0.94912 0.88602 1.22082 0.93297 1.00240 0.94437 0.88620 1.22653 0.99692 1.03835 0.92560 1.21401 0.81915 0.77219 0.89646 1.90666 1.43897 1.45990 1.66169 1.48362 1.13086 1.58428 1.15574 1.21728 1.00742 1.01772 0.81120 1.22260 0.94984 0.98571 0.85321 0.91843 0.93427 0.93426 0.90696 0.93158 0.95265 0.92728 0.96796 0.88821 0.95382 1.00012 0.93060 0.89777 0.94073 0.87272 0.88113 0.91676 0.90018 0.90121 0.87923 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.19 71.98 0.66 -3.65 16 2 C -0.11 -4.26 2.40 -10.79 -0.03 -4.28 16 3 C -0.12 -4.15 8.38 71.98 0.60 -3.55 16 4 C 0.06 2.12 4.14 86.30 0.36 2.47 16 5 N -0.53 -18.49 3.67 -900.81 -3.31 -21.80 16 6 C 0.17 7.22 3.83 85.56 0.33 7.55 16 7 C -0.50 -26.19 7.44 25.60 0.19 -25.99 16 8 H 0.07 4.20 4.88 -2.91 -0.01 4.18 16 9 C 0.01 0.41 5.47 84.66 0.46 0.87 16 10 N -0.95 -57.37 13.96 21.45 0.30 -57.07 16 11 Si 0.93 42.49 27.37 68.60 1.88 44.36 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 14 H -0.25 -10.36 6.70 99.48 0.67 -9.70 16 15 C 0.06 1.57 4.55 86.30 0.39 1.96 16 16 C -0.08 -1.68 3.34 -9.68 -0.03 -1.71 16 17 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 18 C -0.15 -3.38 4.43 30.64 0.14 -3.25 16 19 C 0.51 13.41 8.02 87.90 0.71 14.11 16 20 O -0.59 -20.29 17.35 -3.01 -0.05 -20.34 16 21 N -0.62 -12.21 3.33 -842.90 -2.81 -15.02 16 22 C 0.09 1.29 11.14 127.77 1.42 2.71 16 23 C 0.11 1.70 6.91 86.83 0.60 2.30 16 24 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 3.58 4.87 -2.39 -0.01 3.57 16 28 H 0.05 2.02 6.76 -2.38 -0.02 2.01 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.01 0.48 7.79 -2.39 -0.02 0.46 16 32 H 0.09 2.59 3.56 -2.38 -0.01 2.59 16 33 H 0.03 1.19 7.03 -2.39 -0.02 1.17 16 34 H -0.02 -0.78 6.90 -2.39 -0.02 -0.80 16 35 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 36 H 0.08 1.99 7.60 -2.39 -0.02 1.97 16 37 H 0.04 0.96 7.72 -2.38 -0.02 0.94 16 38 H 0.11 2.38 6.90 -2.39 -0.02 2.37 16 39 H 0.10 2.47 7.32 -2.39 -0.02 2.45 16 40 H 0.06 1.19 7.53 -2.39 -0.02 1.17 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.13 7.89 -2.39 -0.02 1.11 16 Total: -1.00 -67.64 334.14 2.74 -64.91 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.93 Total: 15.41 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 5.80 Total: -10.45 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -5.82 Total: -93.89 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.36 kcal Total: -67.64 2.74 -64.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687178402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.364 kcal (2) G-P(sol) polarization free energy of solvation -67.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds