Wall clock time and date at job start Mon Mar 30 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46804 * 2 1 4 4 C 1.53005 * 109.47312 * 120.00193 * 2 1 3 5 5 H 1.08993 * 109.46887 * 185.97108 * 4 2 1 6 6 C 1.53006 * 109.46825 * 305.96841 * 4 2 1 7 7 N 1.46901 * 109.47251 * 293.08127 * 6 4 2 8 8 C 1.52996 * 109.47122 * 65.96789 * 4 2 1 9 9 C 1.50703 * 109.47205 * 65.55485 * 8 4 2 10 10 O 1.21284 * 119.99658 * 1.11452 * 9 8 4 11 11 N 1.34770 * 120.00172 * 181.11747 * 9 8 4 12 12 C 1.46501 * 120.00151 * 185.05258 * 11 9 8 13 13 C 1.50698 * 109.47260 * 89.99999 * 12 11 9 14 14 H 1.08004 * 119.99936 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00284 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99610 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46967 * 90.00274 * 17 15 13 19 19 H 1.48499 * 109.46826 * 209.99765 * 17 15 13 20 20 H 1.48493 * 109.47242 * 329.99788 * 17 15 13 21 21 C 1.46504 * 120.00082 * 5.05522 * 11 9 8 22 22 C 1.52997 * 117.50022 * 193.21391 * 21 11 9 23 23 C 1.52990 * 117.50364 * 124.58795 * 21 11 9 24 24 H 1.08997 * 109.47382 * 306.38431 * 1 2 3 25 25 H 1.09002 * 109.47383 * 66.38952 * 1 2 3 26 26 H 1.09005 * 109.46911 * 186.38349 * 1 2 3 27 27 H 1.08999 * 109.47223 * 240.00235 * 2 1 3 28 28 H 1.09004 * 109.46632 * 170.77223 * 3 2 1 29 29 H 1.08993 * 109.47289 * 290.77908 * 3 2 1 30 30 H 1.08998 * 109.46634 * 50.78211 * 3 2 1 31 31 H 1.08995 * 109.46839 * 53.08105 * 6 4 2 32 32 H 1.09002 * 109.46889 * 173.08020 * 6 4 2 33 33 H 1.00895 * 110.99987 * 180.02562 * 7 6 4 34 34 H 1.00900 * 110.99426 * 303.95527 * 7 6 4 35 35 H 1.09001 * 109.47019 * 185.55306 * 8 4 2 36 36 H 1.09002 * 109.47179 * 305.55595 * 8 4 2 37 37 H 1.09000 * 109.47012 * 210.00113 * 12 11 9 38 38 H 1.08996 * 109.47127 * 329.99942 * 12 11 9 39 39 H 0.97001 * 120.00426 * 180.02562 * 16 15 13 40 40 H 1.09003 * 115.54658 * 338.91269 * 21 11 9 41 41 H 1.09000 * 117.49863 * 359.97438 * 22 21 11 42 42 H 1.09004 * 117.50090 * 145.01515 * 22 21 11 43 43 H 1.09004 * 117.50106 * 214.97946 * 23 21 11 44 44 H 1.09005 * 117.49815 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1247 -0.6296 1.3042 6 6 1.4112 -0.0918 2.4940 7 7 1.9113 1.2800 2.6548 8 6 1.6562 -2.2005 1.1765 9 6 2.3839 -2.8525 0.0291 10 8 3.1510 -2.2031 -0.6499 11 7 2.1823 -4.1570 -0.2426 12 6 2.9704 -4.8184 -1.2857 13 6 4.2219 -5.3978 -0.6783 14 1 4.4116 -5.2844 0.3789 15 6 5.1254 -6.0718 -1.4723 16 7 6.2173 -6.5779 -0.9421 17 14 4.7976 -6.2673 -3.3009 18 1 5.3870 -5.1188 -4.0350 19 1 5.4130 -7.5304 -3.7817 20 1 3.3326 -6.3082 -3.5396 21 6 1.1750 -4.9139 0.5050 22 6 1.1998 -6.4385 0.3794 23 6 0.0904 -5.6328 -0.2996 24 1 -0.3634 0.6096 0.8273 25 1 -0.3634 0.4116 -0.9416 26 1 -0.3633 -1.0214 0.1143 27 1 1.8933 -0.5138 -0.8900 28 1 3.1174 1.4470 0.1648 29 1 1.8173 1.9066 -0.9607 30 1 1.5484 2.0016 0.7962 31 1 0.3271 -0.0727 2.3832 32 1 1.6764 -0.6806 3.3722 33 1 1.5107 1.7175 3.4710 34 1 2.9194 1.2949 2.6949 35 1 1.9318 -2.6937 2.1087 36 1 0.5808 -2.2897 1.0223 37 1 2.3808 -5.6176 -1.7347 38 1 3.2411 -4.0921 -2.0520 39 1 6.8531 -7.0517 -1.5008 40 1 0.8904 -4.4926 1.4692 41 1 1.9653 -6.8784 -0.2598 42 1 0.9315 -7.0206 1.2611 43 1 -0.9077 -5.6849 0.1353 44 1 0.1260 -5.5424 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690513793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:17 Heat of formation + Delta-G solvation = -15.172947 kcal Electronic energy + Delta-G solvation = -21806.618908 eV Core-core repulsion = 18759.664463 eV Total energy + Delta-G solvation = -3046.954444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.72069 -37.88126 -36.52903 -33.24108 -32.89583 -32.09260 -30.95851 -28.20343 -26.83848 -25.40759 -22.78691 -22.30836 -21.96874 -21.51262 -18.96754 -18.02672 -16.92400 -16.81871 -15.95198 -15.71634 -15.18816 -14.82856 -14.52634 -14.14665 -14.00479 -13.36783 -13.33289 -12.93039 -12.52449 -12.30119 -11.98642 -11.93175 -11.79484 -11.60998 -11.50804 -11.13643 -11.03791 -10.90130 -10.72694 -10.47461 -10.29921 -10.20344 -10.17956 -10.07500 -9.98121 -9.48512 -8.88075 -8.59442 -8.45991 -7.53806 -6.09295 -4.07634 3.28126 3.30934 3.34102 3.36733 3.72794 4.34757 4.38819 4.50522 4.86331 4.95019 5.15038 5.19050 5.23132 5.24669 5.35108 5.40245 5.53003 5.55836 5.62112 5.64814 5.77264 5.79600 5.93639 6.01569 6.11994 6.18267 6.29564 6.34022 6.36804 6.46000 6.59396 6.65140 6.73881 6.75446 6.95405 6.98096 7.06884 7.33843 7.36296 7.60403 8.28645 8.47505 8.93695 9.01792 9.51282 11.03989 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.005482 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.030387 B = 5106.495360 C = 5605.919810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.065 4.065 5 H 0.077 0.923 6 C 0.062 3.938 7 N -0.840 5.840 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.535 6.535 11 N -0.568 5.568 12 C 0.213 3.787 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.873 3.127 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.077 3.923 22 C -0.176 4.176 23 C -0.204 4.204 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.333 0.667 34 H 0.341 0.659 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.066 9.498 6.737 18.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.201 4.201 4 C -0.084 4.084 5 H 0.095 0.905 6 C -0.068 4.068 7 N -0.369 5.369 8 C -0.180 4.180 9 C 0.303 3.697 10 O -0.412 6.412 11 N -0.298 5.298 12 C 0.093 3.907 13 C -0.562 4.562 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.700 3.300 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.029 4.029 22 C -0.214 4.214 23 C -0.243 4.243 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.145 0.855 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.812 9.879 5.608 17.884 hybrid contribution 0.414 -0.833 0.013 0.930 sum -13.399 9.046 5.621 17.116 Atomic orbital electron populations 1.21952 0.96523 1.00856 1.01077 1.21083 0.94484 0.96820 0.98223 1.22010 1.00881 0.96155 1.01079 1.20953 1.00888 0.91949 0.94625 0.90498 1.21935 1.00244 0.88451 0.96187 1.58986 1.12787 1.18945 1.46209 1.21786 1.01431 0.96438 0.98296 1.20255 0.82435 0.81581 0.85458 1.90644 1.37322 1.62322 1.50902 1.47432 1.36276 1.08782 1.37329 1.19646 0.91154 0.92737 0.87166 1.21292 1.03128 1.34481 0.97314 0.90744 1.24836 0.94724 0.95082 0.98273 1.69890 1.10617 1.37076 1.35964 0.86902 0.78984 0.77946 0.86195 1.19889 1.21052 1.19127 1.21500 0.92861 0.92533 0.95979 1.23354 1.01252 0.93446 1.03308 1.23397 0.94423 1.06317 1.00164 0.92619 0.93487 0.93295 0.89981 0.93830 0.95066 0.89215 0.90642 0.95922 0.85466 0.84629 0.89638 0.89286 0.95323 0.94479 0.92583 0.86283 0.86461 0.88783 0.88852 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.36 37.16 0.31 -1.46 16 2 C -0.09 -1.26 2.48 -90.62 -0.22 -1.48 16 3 C -0.14 -1.92 8.20 37.16 0.30 -1.62 16 4 C -0.06 -0.89 1.54 -90.62 -0.14 -1.03 16 5 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 6 C 0.06 0.65 5.84 -3.82 -0.02 0.62 16 7 N -0.84 -7.65 6.31 -10.37 -0.07 -7.72 16 8 C -0.14 -2.00 3.48 -27.88 -0.10 -2.10 16 9 C 0.52 10.37 7.31 -10.99 -0.08 10.29 16 10 O -0.53 -12.83 13.63 5.55 0.08 -12.75 16 11 N -0.57 -11.72 2.80 -167.48 -0.47 -12.19 16 12 C 0.21 5.23 3.54 -5.19 -0.02 5.21 16 13 C -0.52 -14.90 9.49 -34.44 -0.33 -15.23 16 14 H 0.07 2.34 8.06 -52.48 -0.42 1.91 16 15 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 17 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 18 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 21 C 0.08 1.25 6.07 -67.93 -0.41 0.84 16 22 C -0.18 -2.83 9.72 -26.73 -0.26 -3.09 16 23 C -0.20 -2.89 10.03 -26.74 -0.27 -3.16 16 24 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.57 6.23 -51.93 -0.32 0.25 16 27 H 0.08 1.48 5.96 -51.93 -0.31 1.17 16 28 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 1.09 5.82 -51.93 -0.30 0.79 16 31 H 0.08 0.74 6.08 -51.93 -0.32 0.42 16 32 H 0.02 0.22 8.13 -51.93 -0.42 -0.20 16 33 H 0.33 2.35 9.08 -39.29 -0.36 2.00 16 34 H 0.34 3.10 8.99 -39.29 -0.35 2.75 16 35 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 36 H 0.09 1.10 6.05 -51.93 -0.31 0.78 16 37 H 0.03 0.68 5.31 -51.93 -0.28 0.40 16 38 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.12 1.56 6.72 -51.93 -0.35 1.22 16 41 H 0.12 2.29 6.29 -51.93 -0.33 1.97 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.43 7.85 -51.93 -0.41 1.02 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -32.59 335.04 -7.90 -40.49 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.27 Total: 7.11 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.33 Total: -10.18 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.24 Total: -46.70 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.59 -7.90 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690513793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.316 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds