Wall clock time and date at job start Mon Mar 30 2020 04:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46804 * 2 1 4 4 C 1.53005 * 109.47312 * 120.00193 * 2 1 3 5 5 H 1.08993 * 109.46887 * 185.97108 * 4 2 1 6 6 C 1.53006 * 109.46825 * 305.96841 * 4 2 1 7 7 N 1.46901 * 109.47251 * 293.08127 * 6 4 2 8 8 C 1.52996 * 109.47122 * 65.96789 * 4 2 1 9 9 C 1.50703 * 109.47205 * 65.55485 * 8 4 2 10 10 O 1.21284 * 119.99658 * 1.11452 * 9 8 4 11 11 N 1.34770 * 120.00172 * 181.11747 * 9 8 4 12 12 C 1.46501 * 120.00151 * 185.05258 * 11 9 8 13 13 C 1.50698 * 109.47260 * 89.99999 * 12 11 9 14 14 H 1.08004 * 119.99936 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00284 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00309 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99610 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46967 * 90.00274 * 17 15 13 19 19 H 1.48499 * 109.46826 * 209.99765 * 17 15 13 20 20 H 1.48493 * 109.47242 * 329.99788 * 17 15 13 21 21 C 1.46504 * 120.00082 * 5.05522 * 11 9 8 22 22 C 1.52997 * 117.50022 * 193.21391 * 21 11 9 23 23 C 1.52990 * 117.50364 * 124.58795 * 21 11 9 24 24 H 1.08997 * 109.47382 * 306.38431 * 1 2 3 25 25 H 1.09002 * 109.47383 * 66.38952 * 1 2 3 26 26 H 1.09005 * 109.46911 * 186.38349 * 1 2 3 27 27 H 1.08999 * 109.47223 * 240.00235 * 2 1 3 28 28 H 1.09004 * 109.46632 * 170.77223 * 3 2 1 29 29 H 1.08993 * 109.47289 * 290.77908 * 3 2 1 30 30 H 1.08998 * 109.46634 * 50.78211 * 3 2 1 31 31 H 1.08995 * 109.46839 * 53.08105 * 6 4 2 32 32 H 1.09002 * 109.46889 * 173.08020 * 6 4 2 33 33 H 1.00895 * 110.99987 * 180.02562 * 7 6 4 34 34 H 1.00900 * 110.99426 * 303.95527 * 7 6 4 35 35 H 1.09001 * 109.47019 * 185.55306 * 8 4 2 36 36 H 1.09002 * 109.47179 * 305.55595 * 8 4 2 37 37 H 1.09000 * 109.47012 * 210.00113 * 12 11 9 38 38 H 1.08996 * 109.47127 * 329.99942 * 12 11 9 39 39 H 0.97001 * 120.00426 * 180.02562 * 16 15 13 40 40 H 1.09003 * 115.54658 * 338.91269 * 21 11 9 41 41 H 1.09000 * 117.49863 * 359.97438 * 22 21 11 42 42 H 1.09004 * 117.50090 * 145.01515 * 22 21 11 43 43 H 1.09004 * 117.50106 * 214.97946 * 23 21 11 44 44 H 1.09005 * 117.49815 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1247 -0.6296 1.3042 6 6 1.4112 -0.0918 2.4940 7 7 1.9113 1.2800 2.6548 8 6 1.6562 -2.2005 1.1765 9 6 2.3839 -2.8525 0.0291 10 8 3.1510 -2.2031 -0.6499 11 7 2.1823 -4.1570 -0.2426 12 6 2.9704 -4.8184 -1.2857 13 6 4.2219 -5.3978 -0.6783 14 1 4.4116 -5.2844 0.3789 15 6 5.1254 -6.0718 -1.4723 16 7 6.2173 -6.5779 -0.9421 17 14 4.7976 -6.2673 -3.3009 18 1 5.3870 -5.1188 -4.0350 19 1 5.4130 -7.5304 -3.7817 20 1 3.3326 -6.3082 -3.5396 21 6 1.1750 -4.9139 0.5050 22 6 1.1998 -6.4385 0.3794 23 6 0.0904 -5.6328 -0.2996 24 1 -0.3634 0.6096 0.8273 25 1 -0.3634 0.4116 -0.9416 26 1 -0.3633 -1.0214 0.1143 27 1 1.8933 -0.5138 -0.8900 28 1 3.1174 1.4470 0.1648 29 1 1.8173 1.9066 -0.9607 30 1 1.5484 2.0016 0.7962 31 1 0.3271 -0.0727 2.3832 32 1 1.6764 -0.6806 3.3722 33 1 1.5107 1.7175 3.4710 34 1 2.9194 1.2949 2.6949 35 1 1.9318 -2.6937 2.1087 36 1 0.5808 -2.2897 1.0223 37 1 2.3808 -5.6176 -1.7347 38 1 3.2411 -4.0921 -2.0520 39 1 6.8531 -7.0517 -1.5008 40 1 0.8904 -4.4926 1.4692 41 1 1.9653 -6.8784 -0.2598 42 1 0.9315 -7.0206 1.2611 43 1 -0.9077 -5.6849 0.1353 44 1 0.1260 -5.5424 -1.3854 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690513793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:16 Heat of formation + Delta-G solvation = -37.873871 kcal Electronic energy + Delta-G solvation = -21807.603294 eV Core-core repulsion = 18759.664463 eV Total energy + Delta-G solvation = -3047.938830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.17508 -39.07370 -37.91184 -35.19549 -33.89142 -33.77201 -32.28210 -30.02911 -27.84492 -26.67061 -24.42606 -23.52074 -23.18030 -22.93770 -20.15970 -19.44966 -19.09749 -18.27888 -17.18708 -16.92892 -16.42313 -16.16502 -16.01433 -15.63252 -15.20619 -14.70330 -14.62391 -14.53059 -14.03300 -13.65345 -13.57469 -13.20011 -12.96051 -12.83082 -12.69437 -12.63909 -12.57326 -12.35347 -12.19718 -12.09236 -11.86139 -11.60499 -11.44086 -11.35259 -11.25983 -11.15121 -10.86029 -10.44280 -9.24569 -9.15839 -8.36668 -6.40252 1.26949 1.30972 1.38705 1.78762 2.23605 2.26676 2.97078 3.10497 3.57486 3.73771 3.89874 3.92711 4.07231 4.17240 4.20514 4.23229 4.48654 4.57231 4.64665 4.64860 4.69830 4.73542 4.84058 4.86713 4.94168 4.97485 5.00442 5.14315 5.20839 5.24822 5.29763 5.39146 5.40215 5.42737 5.49382 5.62917 5.70982 5.88189 6.22700 6.31613 6.60332 6.71715 6.74624 7.20148 7.45826 8.80156 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.005482 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.030387 B = 5106.495360 C = 5605.919810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.137 4.137 4 C -0.062 4.062 5 H 0.041 0.959 6 C 0.072 3.928 7 N -0.845 5.845 8 C -0.126 4.126 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.579 5.579 12 C 0.226 3.774 13 C -0.524 4.524 14 H 0.030 0.970 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.940 3.060 18 H -0.278 1.278 19 H -0.272 1.272 20 H -0.244 1.244 21 C 0.057 3.943 22 C -0.191 4.191 23 C -0.174 4.174 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.349 0.651 34 H 0.340 0.660 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.042 0.958 38 H 0.013 0.987 39 H 0.268 0.732 40 H 0.158 0.842 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.138 0.862 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.612 9.909 7.665 21.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.194 4.194 4 C -0.081 4.081 5 H 0.060 0.940 6 C -0.058 4.058 7 N -0.375 5.375 8 C -0.166 4.166 9 C 0.292 3.708 10 O -0.467 6.467 11 N -0.308 5.308 12 C 0.104 3.896 13 C -0.562 4.562 14 H 0.048 0.952 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.763 3.237 18 H -0.203 1.203 19 H -0.197 1.197 20 H -0.167 1.167 21 C -0.047 4.047 22 C -0.229 4.229 23 C -0.212 4.212 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.052 0.948 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.175 0.825 41 H 0.093 0.907 42 H 0.140 0.860 43 H 0.156 0.844 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.409 10.283 6.573 21.260 hybrid contribution 1.574 -0.949 -0.214 1.850 sum -15.835 9.334 6.359 19.450 Atomic orbital electron populations 1.21892 0.94147 1.01739 1.01894 1.21022 0.96422 0.96650 0.96691 1.21981 0.99911 0.95999 1.01512 1.20901 0.99092 0.91909 0.96246 0.94003 1.21809 1.00710 0.88889 0.94406 1.58894 1.12917 1.18398 1.47310 1.21807 1.02403 0.96245 0.96099 1.21371 0.82027 0.81219 0.86204 1.90619 1.39676 1.63511 1.52884 1.47528 1.36831 1.09432 1.37034 1.19203 0.90332 0.92281 0.87798 1.21440 1.05004 1.34415 0.95381 0.95179 1.25745 0.94375 0.94725 1.03494 1.70030 1.11882 1.38345 1.38030 0.85836 0.80219 0.77998 0.79669 1.20334 1.19701 1.16712 1.22044 0.92783 0.92227 0.97685 1.23328 1.01638 0.93630 1.04315 1.23460 0.95541 1.02907 0.99308 0.90561 0.93657 0.92568 0.94518 0.95564 0.95464 0.87371 0.88934 0.94830 0.83681 0.84750 0.87753 0.85965 0.94015 0.96920 0.92292 0.82470 0.90718 0.85962 0.84417 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.36 71.98 0.60 -2.39 16 2 C -0.09 -2.52 2.48 -10.79 -0.03 -2.55 16 3 C -0.14 -3.62 8.20 71.98 0.59 -3.03 16 4 C -0.06 -1.64 1.54 -10.79 -0.02 -1.65 16 5 H 0.04 1.39 7.88 -2.39 -0.02 1.37 16 6 C 0.07 1.27 5.84 86.30 0.50 1.78 16 7 N -0.84 -13.32 6.31 -186.71 -1.18 -14.49 16 8 C -0.13 -3.38 3.48 29.85 0.10 -3.28 16 9 C 0.50 20.45 7.31 87.66 0.64 21.09 16 10 O -0.59 -29.65 13.63 -3.04 -0.04 -29.69 16 11 N -0.58 -23.94 2.80 -802.16 -2.25 -26.19 16 12 C 0.23 11.37 3.54 85.63 0.30 11.67 16 13 C -0.52 -31.17 9.49 25.60 0.24 -30.92 16 14 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 15 C 0.01 0.88 5.47 84.65 0.46 1.35 16 16 N -0.94 -60.11 13.96 21.45 0.30 -59.81 16 17 Si 0.94 45.64 27.47 68.60 1.88 47.52 16 18 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.24 -10.82 6.54 99.48 0.65 -10.17 16 21 C 0.06 1.70 6.07 44.99 0.27 1.97 16 22 C -0.19 -5.83 9.72 30.59 0.30 -5.53 16 23 C -0.17 -4.31 10.03 30.59 0.31 -4.00 16 24 H 0.08 1.33 6.54 -2.39 -0.02 1.32 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 1.11 6.23 -2.38 -0.01 1.10 16 27 H 0.04 1.38 5.96 -2.39 -0.01 1.36 16 28 H 0.03 0.75 8.09 -2.39 -0.02 0.73 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 2.44 5.82 -2.39 -0.01 2.42 16 31 H 0.09 1.36 6.08 -2.39 -0.01 1.35 16 32 H 0.03 0.54 8.13 -2.39 -0.02 0.52 16 33 H 0.35 3.81 9.08 -89.70 -0.81 2.99 16 34 H 0.34 5.74 8.99 -89.69 -0.81 4.93 16 35 H 0.10 2.45 7.84 -2.39 -0.02 2.44 16 36 H 0.12 2.50 6.05 -2.39 -0.01 2.49 16 37 H 0.04 1.98 5.31 -2.39 -0.01 1.97 16 38 H 0.01 0.70 6.79 -2.39 -0.02 0.68 16 39 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.16 3.45 6.72 -2.39 -0.02 3.44 16 41 H 0.07 2.95 6.29 -2.39 -0.02 2.94 16 42 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 44 H 0.08 2.20 7.85 -2.38 -0.02 2.18 16 Total: -1.00 -77.28 335.04 2.33 -74.95 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.67 Total: 23.23 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 4.28 Total: -15.51 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -3.13 Total: -100.50 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.04 Total: -29.69 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -77.28 2.33 -74.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690513793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -77.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds