Wall clock time and date at job start Mon Mar 30 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46735 * 2 1 4 4 C 1.52998 * 109.47422 * 240.00021 * 2 1 3 5 5 H 1.09001 * 109.47276 * 173.54681 * 4 2 1 6 6 C 1.52993 * 109.47025 * 293.54944 * 4 2 1 7 7 N 1.46901 * 109.47132 * 295.09265 * 6 4 2 8 8 C 1.52999 * 109.46998 * 53.54578 * 4 2 1 9 9 C 1.50702 * 109.47080 * 78.21435 * 8 4 2 10 10 O 1.21275 * 120.00074 * 8.89150 * 9 8 4 11 11 N 1.34778 * 119.99966 * 188.89630 * 9 8 4 12 12 C 1.46504 * 119.99749 * 185.27969 * 11 9 8 13 13 C 1.53002 * 109.46914 * 185.09051 * 12 11 9 14 14 C 1.50700 * 115.54976 * 65.31770 * 13 12 11 15 15 H 1.08004 * 119.99598 * 270.80887 * 14 13 12 16 16 C 1.37873 * 120.00244 * 90.81403 * 14 13 12 17 17 N 1.31517 * 120.00026 * 182.91194 * 16 14 13 18 18 Si 1.86798 * 120.00024 * 2.91029 * 16 14 13 19 19 H 1.48497 * 109.46990 * 85.24539 * 18 16 14 20 20 H 1.48500 * 109.47049 * 205.24545 * 18 16 14 21 21 H 1.48502 * 109.47025 * 325.24589 * 18 16 14 22 22 C 1.52999 * 117.50037 * 279.64565 * 13 12 11 23 23 C 1.52999 * 117.50031 * 210.98719 * 13 12 11 24 24 H 1.09000 * 109.47477 * 53.85425 * 1 2 3 25 25 H 1.09004 * 109.46940 * 173.85179 * 1 2 3 26 26 H 1.08998 * 109.47687 * 293.85391 * 1 2 3 27 27 H 1.09002 * 109.47175 * 119.99739 * 2 1 3 28 28 H 1.09002 * 109.47177 * 186.89666 * 3 2 1 29 29 H 1.08995 * 109.47507 * 306.89667 * 3 2 1 30 30 H 1.09004 * 109.46998 * 66.90114 * 3 2 1 31 31 H 1.08998 * 109.47674 * 55.09495 * 6 4 2 32 32 H 1.08998 * 109.47305 * 175.09604 * 6 4 2 33 33 H 1.00899 * 111.00221 * 62.27216 * 7 6 4 34 34 H 1.00898 * 111.00325 * 186.22933 * 7 6 4 35 35 H 1.08996 * 109.47338 * 198.20994 * 8 4 2 36 36 H 1.09000 * 109.47563 * 318.21753 * 8 4 2 37 37 H 0.96997 * 119.99950 * 5.27000 * 11 9 8 38 38 H 1.08998 * 109.47450 * 305.08832 * 12 11 9 39 39 H 1.09003 * 109.47226 * 65.09469 * 12 11 9 40 40 H 0.96998 * 120.00333 * 179.97438 * 17 16 14 41 41 H 1.08999 * 117.49689 * 359.97438 * 22 13 12 42 42 H 1.09002 * 117.50028 * 145.02116 * 22 13 12 43 43 H 1.08999 * 117.50250 * 214.98508 * 23 13 12 44 44 H 1.09003 * 117.49947 * 359.97033 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 3.1239 -0.6223 -1.3088 6 6 1.6667 -2.2028 -1.1708 7 7 2.3729 -2.8268 -0.0439 8 6 1.4019 -0.0997 -2.4932 9 6 2.1018 1.1934 -2.8239 10 8 3.1175 1.5005 -2.2367 11 7 1.5988 2.0084 -3.7722 12 6 2.3386 3.2069 -4.1755 13 6 1.4977 4.0166 -5.1645 14 6 0.2240 4.6001 -4.6093 15 1 -0.6912 4.0276 -4.6416 16 6 0.2271 5.8648 -4.0603 17 7 -0.8708 6.3516 -3.5242 18 14 1.7905 6.8868 -4.0778 19 1 1.8957 7.6084 -5.3714 20 1 1.7523 7.8691 -2.9647 21 1 2.9665 5.9954 -3.9112 22 6 1.4871 3.5577 -6.6241 23 6 2.2425 4.8282 -6.2263 24 1 -0.3634 0.6061 -0.8298 25 1 -0.3633 -1.0218 -0.1101 26 1 -0.3634 0.4156 0.9398 27 1 1.8933 -0.5138 0.8900 28 1 3.1229 1.4451 -0.1234 29 1 1.5793 1.9908 -0.8218 30 1 1.7808 1.9195 0.9453 31 1 0.5910 -2.2993 -1.0237 32 1 1.9525 -2.6991 -2.0982 33 1 2.0969 -2.4087 0.8319 34 1 2.2234 -3.8246 -0.0313 35 1 1.4960 -0.7886 -3.3325 36 1 0.3472 0.0970 -2.3009 37 1 0.7471 1.8015 -4.1876 38 1 2.5517 3.8154 -3.2966 39 1 3.2751 2.9134 -4.6500 40 1 -0.8686 7.2412 -3.1376 41 1 2.0796 2.6792 -6.8797 42 1 0.5590 3.6782 -7.1828 43 1 1.8112 5.7840 -6.5235 44 1 3.3317 4.7857 -6.2200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690551339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:11 Heat of formation + Delta-G solvation = -27.209834 kcal Electronic energy + Delta-G solvation = -21624.287088 eV Core-core repulsion = 18576.810685 eV Total energy + Delta-G solvation = -3047.476403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86109 -37.70746 -36.73031 -33.50660 -33.27519 -32.12999 -30.60600 -27.19964 -26.97539 -25.76967 -24.53049 -22.59502 -21.81225 -19.96436 -19.24923 -18.41561 -16.83910 -16.34587 -16.23205 -15.93540 -15.25038 -15.02890 -14.56108 -14.13562 -13.99211 -13.55790 -13.12920 -12.84135 -12.76989 -12.55701 -12.36364 -12.21617 -12.04304 -11.73195 -11.33592 -11.20229 -11.06264 -10.88223 -10.50667 -10.42733 -10.27292 -10.21011 -10.07328 -9.67040 -9.26271 -9.16022 -8.79291 -8.66259 -8.55950 -8.21743 -6.16731 -4.21093 3.20025 3.27694 3.38711 3.43434 3.76333 4.39174 4.47743 4.79923 4.82781 4.89370 5.01774 5.12145 5.24389 5.38363 5.46946 5.56809 5.61226 5.65086 5.68438 5.73924 5.91777 5.99880 6.01838 6.04545 6.17386 6.21755 6.24301 6.37370 6.39580 6.45629 6.52868 6.62838 6.68523 6.83466 6.98490 7.00001 7.08014 7.21549 7.26865 7.66915 8.22369 8.39837 8.82984 8.85403 9.46520 10.94669 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.005011 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.507080 B = 5586.528306 C = 5999.159320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.069 4.069 5 H 0.094 0.906 6 C 0.063 3.937 7 N -0.850 5.850 8 C -0.144 4.144 9 C 0.506 3.494 10 O -0.547 6.547 11 N -0.706 5.706 12 C 0.158 3.842 13 C -0.014 4.014 14 C -0.489 4.489 15 H 0.078 0.922 16 C 0.080 3.920 17 N -0.895 5.895 18 Si 0.883 3.117 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.260 1.260 22 C -0.180 4.180 23 C -0.197 4.197 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 -14.959 3.294 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 C -0.199 4.199 4 C -0.088 4.088 5 H 0.112 0.888 6 C -0.067 4.067 7 N -0.380 5.380 8 C -0.184 4.184 9 C 0.293 3.707 10 O -0.426 6.426 11 N -0.356 5.356 12 C 0.034 3.966 13 C -0.015 4.015 14 C -0.527 4.527 15 H 0.096 0.904 16 C -0.123 4.123 17 N -0.532 5.532 18 Si 0.712 3.288 19 H -0.204 1.204 20 H -0.223 1.223 21 H -0.185 1.185 22 C -0.217 4.217 23 C -0.235 4.235 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.195 -14.294 3.439 15.288 hybrid contribution -0.719 0.428 0.059 0.839 sum 3.476 -13.865 3.498 14.716 Atomic orbital electron populations 1.22046 0.96001 1.01136 1.02131 1.21085 0.94935 0.97256 0.97329 1.22073 1.02594 0.94669 1.00517 1.21028 1.02272 0.92305 0.93216 0.88777 1.21905 0.95405 0.95008 0.94398 1.58681 1.64737 1.08092 1.06515 1.21822 1.01709 0.95529 0.99363 1.20406 0.85548 0.85516 0.79268 1.90657 1.26158 1.75337 1.50489 1.45865 1.24768 1.24964 1.39962 1.21059 0.92290 0.85061 0.98144 1.19652 0.96972 0.98229 0.86683 1.20159 0.92548 1.00669 1.39285 0.90418 1.24975 0.95974 0.97535 0.93857 1.69882 1.27530 1.17642 1.38132 0.86828 0.84696 0.80216 0.77098 1.20413 1.22326 1.18456 1.22870 1.01409 0.96441 1.00967 1.22964 0.97131 0.96197 1.07221 0.91954 0.93094 0.92898 0.91618 0.91057 0.92259 0.94524 0.95189 0.91259 0.84658 0.85060 0.89346 0.88752 0.76445 0.91693 0.94197 0.92475 0.90919 0.89416 0.89107 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.42 37.15 0.31 -1.47 16 2 C -0.09 -1.10 2.58 -90.62 -0.23 -1.33 16 3 C -0.14 -2.24 7.49 37.16 0.28 -1.96 16 4 C -0.07 -0.85 1.86 -90.62 -0.17 -1.02 16 5 H 0.09 1.42 7.27 -51.93 -0.38 1.05 16 6 C 0.06 0.62 6.07 -3.83 -0.02 0.60 16 7 N -0.85 -7.83 9.56 -10.37 -0.10 -7.93 16 8 C -0.14 -1.82 5.04 -27.88 -0.14 -1.96 16 9 C 0.51 8.64 5.90 -10.98 -0.06 8.57 16 10 O -0.55 -10.95 12.16 5.56 0.07 -10.88 16 11 N -0.71 -12.72 5.46 -60.29 -0.33 -13.05 16 12 C 0.16 3.29 5.38 -4.04 -0.02 3.27 16 13 C -0.01 -0.31 0.88 -155.66 -0.14 -0.45 16 14 C -0.49 -12.79 9.35 -34.44 -0.32 -13.11 16 15 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.90 -26.45 13.96 55.43 0.77 -25.68 16 18 Si 0.88 21.61 24.65 -169.99 -4.19 17.42 16 19 H -0.28 -6.60 6.86 56.52 0.39 -6.21 16 20 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.26 -6.18 6.45 56.52 0.36 -5.81 16 22 C -0.18 -3.40 9.96 -26.70 -0.27 -3.67 16 23 C -0.20 -4.06 7.35 -26.70 -0.20 -4.25 16 24 H 0.06 0.78 6.31 -51.93 -0.33 0.46 16 25 H 0.05 0.49 6.27 -51.93 -0.33 0.17 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 28 H 0.07 1.24 6.81 -51.93 -0.35 0.89 16 29 H 0.06 1.08 5.69 -51.93 -0.30 0.79 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.03 0.27 6.29 -51.93 -0.33 -0.06 16 32 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 33 H 0.34 2.92 7.34 -39.29 -0.29 2.63 16 34 H 0.34 2.41 9.08 -39.29 -0.36 2.06 16 35 H 0.09 0.95 7.94 -51.93 -0.41 0.53 16 36 H 0.09 1.12 5.54 -51.93 -0.29 0.83 16 37 H 0.40 6.68 8.46 -40.82 -0.35 6.33 16 38 H 0.06 1.53 7.56 -51.93 -0.39 1.13 16 39 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.09 1.97 6.43 -51.93 -0.33 1.64 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 332.71 15.07 5.01 5.01 Total: -1.00 -29.95 332.71 -7.17 -37.12 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.32 Total: 12.65 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.08 Total: -14.67 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.35 Total: -46.65 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.07 Total: -10.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.19 Total: 17.42 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.95 -7.17 -37.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690551339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.911 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds