Wall clock time and date at job start Mon Mar 30 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47093 * 2 1 4 4 H 1.08996 * 110.07134 * 307.71938 * 3 2 1 5 5 N 1.47904 * 109.91477 * 68.92646 * 3 2 1 6 6 C 1.48531 * 105.81986 * 144.68244 * 5 3 2 7 7 C 1.54931 * 103.23030 * 320.79060 * 6 5 3 8 8 C 1.53997 * 109.91625 * 186.50910 * 3 2 1 9 9 H 1.09003 * 110.30315 * 120.41026 * 8 3 2 10 10 C 1.50700 * 110.31042 * 358.34622 * 8 3 2 11 11 O 1.21283 * 119.99421 * 270.29727 * 10 8 3 12 12 N 1.34771 * 120.00192 * 90.57000 * 10 8 3 13 13 C 1.46497 * 119.99794 * 179.72238 * 12 10 8 14 14 C 1.53005 * 109.46819 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47230 * 299.99988 * 14 13 12 16 16 C 1.53001 * 109.47231 * 60.00623 * 14 13 12 17 17 C 1.50703 * 109.46791 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00493 * 358.41657 * 17 14 13 19 19 C 1.37883 * 119.99979 * 178.42066 * 17 14 13 20 20 N 1.31510 * 120.00215 * 194.81998 * 19 17 14 21 21 Si 1.86799 * 119.99799 * 14.81616 * 19 17 14 22 22 H 1.48501 * 109.47017 * 84.82702 * 21 19 17 23 23 H 1.48504 * 109.47017 * 204.82543 * 21 19 17 24 24 H 1.48497 * 109.47292 * 324.82524 * 21 19 17 25 25 H 1.08993 * 109.47199 * 299.99781 * 1 2 3 26 26 H 1.09010 * 109.47181 * 60.00156 * 1 2 3 27 27 H 1.09001 * 109.47144 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47007 * 240.00377 * 2 1 3 29 29 H 1.08999 * 109.46893 * 120.00561 * 2 1 3 30 30 H 1.00901 * 110.99753 * 265.19299 * 5 3 2 31 31 H 1.09001 * 110.66771 * 79.22929 * 6 5 3 32 32 H 1.09003 * 110.66446 * 202.18546 * 6 5 3 33 33 H 1.09004 * 110.72181 * 279.06117 * 7 6 5 34 34 H 1.08993 * 110.73062 * 155.77256 * 7 6 5 35 35 H 0.97002 * 120.00422 * 359.72954 * 12 10 8 36 36 H 1.08992 * 109.47728 * 300.00318 * 13 12 10 37 37 H 1.09000 * 109.47266 * 60.01178 * 13 12 10 38 38 H 1.08996 * 109.46628 * 69.74371 * 15 14 13 39 39 H 1.08999 * 109.47258 * 189.73945 * 15 14 13 40 40 H 1.08995 * 109.47460 * 309.74009 * 15 14 13 41 41 H 1.08996 * 109.46923 * 59.99368 * 16 14 13 42 42 H 1.09003 * 109.46878 * 179.97438 * 16 14 13 43 43 H 1.08998 * 109.46703 * 299.99679 * 16 14 13 44 44 H 0.96996 * 120.00096 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5741 2.0039 -0.8098 5 7 1.7365 2.0841 1.2976 6 6 2.8803 2.9888 1.5793 7 6 4.1055 2.1715 1.0986 8 6 3.5711 1.4575 -0.1641 9 1 3.8499 2.0116 -1.0604 10 6 4.1036 0.0495 -0.2339 11 8 4.4248 -0.5283 0.7829 12 7 4.2280 -0.5656 -1.4266 13 6 4.7514 -1.9322 -1.4949 14 6 4.7904 -2.3910 -2.9540 15 6 3.3764 -2.3566 -3.5374 16 6 5.6969 -1.4570 -3.7582 17 6 5.3282 -3.7970 -3.0242 18 1 5.6376 -4.3026 -2.1214 19 6 5.4254 -4.4381 -4.2410 20 7 5.6109 -5.7392 -4.2859 21 14 5.2934 -3.4583 -5.8259 22 1 6.6234 -2.8959 -6.1725 23 1 4.8317 -4.3485 -6.9212 24 1 4.3201 -2.3515 -5.6441 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.8703 2.5997 1.2522 31 1 2.7879 3.9142 1.0106 32 1 2.9500 3.2000 2.6464 33 1 4.4054 1.4455 1.8543 34 1 4.9350 2.8321 0.8463 35 1 3.9711 -0.1035 -2.2398 36 1 5.7588 -1.9567 -1.0796 37 1 4.1058 -2.5976 -0.9217 38 1 3.0537 -1.3213 -3.6468 39 1 3.3740 -2.8429 -4.5129 40 1 2.6944 -2.8811 -2.8683 41 1 6.7042 -1.4816 -3.3425 42 1 5.7251 -1.7842 -4.7976 43 1 5.3075 -0.4402 -3.7074 44 1 5.6797 -6.1901 -5.1419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690887089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:57 Heat of formation + Delta-G solvation = -31.989801 kcal Electronic energy + Delta-G solvation = -21926.369311 eV Core-core repulsion = 18878.685633 eV Total energy + Delta-G solvation = -3047.683678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.33926 -37.95592 -36.52485 -33.50538 -33.04418 -31.57182 -30.59745 -28.21109 -26.39450 -25.94237 -24.88076 -23.35694 -21.72671 -20.97255 -19.43651 -18.89848 -17.20933 -16.76579 -16.08592 -15.39246 -15.07360 -14.96306 -14.71319 -14.38259 -13.48769 -13.37309 -13.16500 -12.94968 -12.75462 -12.64649 -12.36454 -12.24528 -12.20086 -12.07898 -11.64310 -11.32152 -11.30261 -10.96505 -10.73397 -10.65638 -10.43730 -10.33476 -10.16096 -10.04331 -9.46048 -9.12034 -8.70269 -8.69484 -8.51130 -8.41828 -6.15597 -4.12241 2.96292 3.22529 3.30058 3.37182 3.61550 4.00735 4.34863 4.49359 4.51551 4.86763 4.99181 5.13446 5.15167 5.27176 5.28535 5.35419 5.42391 5.56605 5.71508 5.76595 5.80349 5.87821 6.04423 6.05769 6.07335 6.16682 6.22446 6.34872 6.40723 6.48753 6.52495 6.62702 6.65891 6.69364 6.80159 6.97310 7.15070 7.22430 7.42349 7.72007 7.95836 8.44348 8.63669 8.90510 9.48673 10.97550 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.004822 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.977620 B = 5805.180589 C = 6036.711135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.089 3.911 4 H 0.054 0.946 5 N -0.662 5.662 6 C 0.040 3.960 7 C -0.112 4.112 8 C -0.122 4.122 9 H 0.090 0.910 10 C 0.522 3.478 11 O -0.540 6.540 12 N -0.724 5.724 13 C 0.143 3.857 14 C 0.028 3.972 15 C -0.144 4.144 16 C -0.145 4.145 17 C -0.513 4.513 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.890 5.890 21 Si 0.879 3.121 22 H -0.286 1.286 23 H -0.304 1.304 24 H -0.245 1.245 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.336 0.664 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 18.243 5.414 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.021 4.021 4 H 0.072 0.928 5 N -0.292 5.292 6 C -0.089 4.089 7 C -0.150 4.150 8 C -0.144 4.144 9 H 0.108 0.892 10 C 0.307 3.693 11 O -0.418 6.418 12 N -0.375 5.375 13 C 0.020 3.980 14 C 0.027 3.973 15 C -0.201 4.201 16 C -0.202 4.202 17 C -0.551 4.551 18 H 0.094 0.906 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.711 3.289 22 H -0.213 1.213 23 H -0.232 1.232 24 H -0.171 1.171 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.152 0.848 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.395 17.061 6.467 19.687 hybrid contribution -0.206 1.373 -2.180 2.584 sum -7.602 18.434 4.288 20.396 Atomic orbital electron populations 1.21702 0.95750 1.01728 1.01128 1.21777 0.96168 0.94805 1.03539 1.22076 0.92439 0.96756 0.90876 0.92758 1.62985 1.04563 1.31219 1.30399 1.23013 0.90863 0.93802 1.01228 1.22496 0.96854 0.98941 0.96693 1.22275 0.96276 0.95157 1.00703 0.89195 1.20067 0.77777 0.87626 0.83808 1.90674 1.49971 1.66725 1.34417 1.46391 1.65431 1.17619 1.08061 1.21485 0.98289 0.79642 0.98566 1.18715 0.92491 0.96064 0.90007 1.22350 0.98231 0.97921 1.01591 1.22309 1.00773 0.97188 0.99941 1.20714 1.43536 0.95601 0.95244 0.90591 1.24962 0.94293 0.94397 0.98985 1.69958 1.48890 1.07854 1.25983 0.87444 0.78601 0.79866 0.83011 1.21346 1.23241 1.17108 0.92491 0.93464 0.92709 0.90969 0.90204 0.84832 0.94288 0.89865 0.88537 0.90968 0.77071 0.92133 0.91918 0.95978 0.92376 0.93390 0.92871 0.94097 0.95338 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.83 37.16 0.37 -1.22 16 2 C -0.12 -1.62 4.44 -26.73 -0.12 -1.74 16 3 C 0.09 0.98 3.25 -66.64 -0.22 0.77 16 4 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 5 N -0.66 -6.83 6.80 -103.14 -0.70 -7.53 16 6 C 0.04 0.37 7.55 -1.90 -0.01 0.36 16 7 C -0.11 -1.26 6.55 -24.87 -0.16 -1.42 16 8 C -0.12 -1.46 3.38 -90.41 -0.31 -1.77 16 9 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.52 8.34 4.77 -10.99 -0.05 8.28 16 11 O -0.54 -10.76 15.23 5.55 0.08 -10.67 16 12 N -0.72 -11.59 4.20 -60.30 -0.25 -11.85 16 13 C 0.14 2.83 4.49 -4.04 -0.02 2.81 16 14 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 15 C -0.14 -2.88 7.47 37.16 0.28 -2.60 16 16 C -0.15 -2.89 7.63 37.16 0.28 -2.61 16 17 C -0.51 -13.71 8.62 -34.44 -0.30 -14.01 16 18 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 19 C 0.08 2.11 5.31 -17.82 -0.09 2.02 16 20 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 21 Si 0.88 20.79 22.78 -169.99 -3.87 16.92 16 22 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 23 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.25 -5.24 4.59 56.52 0.26 -4.98 16 25 H 0.06 0.58 7.90 -51.93 -0.41 0.17 16 26 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.01 6.61 -51.93 -0.34 0.67 16 29 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 30 H 0.34 2.76 8.92 -39.29 -0.35 2.41 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.36 6.85 -51.93 -0.36 1.01 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.39 5.51 6.26 -40.82 -0.26 5.25 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.36 7.14 -51.93 -0.37 -0.01 16 39 H 0.06 1.25 3.97 -51.93 -0.21 1.04 16 40 H 0.05 0.96 8.12 -51.93 -0.42 0.53 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.86 2.56 -51.93 -0.13 0.73 16 43 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -30.58 325.93 -7.00 -37.58 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.52 Total: 7.04 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.43 Total: -10.61 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.18 Total: -45.17 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -3.87 Total: 16.92 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.58 -7.00 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690887089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.590 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds