Wall clock time and date at job start Mon Mar 30 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46810 * 2 1 4 4 H 1.09001 * 110.06078 * 53.72844 * 3 2 1 5 5 N 1.47896 * 109.91619 * 292.52468 * 3 2 1 6 6 C 1.48534 * 105.81655 * 215.31953 * 5 3 2 7 7 C 1.54937 * 103.23072 * 39.20682 * 6 5 3 8 8 C 1.53988 * 109.91591 * 174.93133 * 3 2 1 9 9 H 1.08996 * 110.39435 * 239.53786 * 8 3 2 10 10 C 1.50701 * 110.31200 * 1.66367 * 8 3 2 11 11 O 1.21280 * 120.00159 * 84.02247 * 10 8 3 12 12 N 1.34781 * 119.99914 * 263.75286 * 10 8 3 13 13 C 1.46502 * 119.99912 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.46961 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47177 * 300.00163 * 14 13 12 16 16 C 1.53003 * 109.46993 * 60.00304 * 14 13 12 17 17 C 1.50701 * 109.47006 * 179.97438 * 14 13 12 18 18 H 1.08003 * 120.00092 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99981 * 180.02562 * 17 14 13 20 20 N 1.31509 * 120.00022 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00116 * 180.02562 * 19 17 14 22 22 H 1.48507 * 109.46841 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47059 * 119.99476 * 21 19 17 24 24 H 1.48498 * 109.47179 * 239.99989 * 21 19 17 25 25 H 1.09005 * 109.46888 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47098 * 299.99948 * 1 2 3 27 27 H 1.08995 * 109.47112 * 60.00039 * 1 2 3 28 28 H 1.09001 * 109.47098 * 240.00052 * 2 1 3 29 29 H 1.09004 * 109.46974 * 119.99406 * 2 1 3 30 30 H 1.00901 * 111.00097 * 335.83078 * 5 3 2 31 31 H 1.09000 * 110.66761 * 280.76592 * 6 5 3 32 32 H 1.09002 * 110.66787 * 157.63931 * 6 5 3 33 33 H 1.09000 * 110.71996 * 204.23005 * 7 6 5 34 34 H 1.08996 * 110.72282 * 80.94488 * 7 6 5 35 35 H 0.96998 * 119.99985 * 359.97438 * 12 10 8 36 36 H 1.09002 * 109.47022 * 299.99897 * 13 12 10 37 37 H 1.08999 * 109.46979 * 59.99806 * 13 12 10 38 38 H 1.08992 * 109.47313 * 59.99840 * 15 14 13 39 39 H 1.09002 * 109.46902 * 180.02562 * 15 14 13 40 40 H 1.08998 * 109.47276 * 299.99608 * 15 14 13 41 41 H 1.09002 * 109.47349 * 59.99613 * 16 14 13 42 42 H 1.09002 * 109.46921 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.46967 * 299.99476 * 16 14 13 44 44 H 0.97008 * 120.00026 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5935 1.9970 0.8255 5 7 1.7056 2.0951 -1.2844 6 6 2.8425 3.0023 -1.5856 7 6 4.0789 2.1811 -1.1412 8 6 3.5745 1.4565 0.1279 9 1 3.8762 2.0036 1.0210 10 6 4.1084 0.0480 0.1730 11 8 4.3082 -0.5581 -0.8583 12 7 4.3691 -0.5362 1.3593 13 6 4.8877 -1.9056 1.4032 14 6 5.0962 -2.3256 2.8596 15 6 6.0977 -1.3794 3.5248 16 6 3.7615 -2.2616 3.6049 17 6 5.6291 -3.7345 2.9047 18 1 5.8021 -4.2761 1.9865 19 6 5.8957 -4.3322 4.1183 20 7 5.6845 -3.6729 5.2364 21 14 6.5568 -6.0784 4.1743 22 1 6.7050 -6.5962 2.7903 23 1 7.8791 -6.0856 4.8501 24 1 5.6115 -6.9418 4.9267 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.5848 1.4115 -2.0166 31 1 2.7639 3.9228 -1.0072 32 1 2.8887 3.2201 -2.6527 33 1 4.9141 2.8397 -0.9031 34 1 4.3606 1.4616 -1.9099 35 1 4.2134 -0.0499 2.1840 36 1 4.1744 -2.5796 0.9289 37 1 5.8387 -1.9512 0.8726 38 1 5.7120 -0.3606 3.4921 39 1 6.2466 -1.6789 4.5622 40 1 7.0486 -1.4251 2.9939 41 1 3.0480 -2.9356 3.1309 42 1 3.9100 -2.5612 4.6423 43 1 3.3757 -1.2427 3.5723 44 1 5.8724 -4.0933 6.0902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690887091.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:03 Heat of formation + Delta-G solvation = -55.350310 kcal Electronic energy + Delta-G solvation = -21822.419199 eV Core-core repulsion = 18773.722533 eV Total energy + Delta-G solvation = -3048.696666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36988 -37.87493 -36.23524 -33.43205 -33.12342 -31.11966 -30.08901 -28.07280 -25.75576 -25.66317 -24.94006 -23.19532 -21.62769 -21.42672 -19.30386 -18.73161 -16.84998 -16.12072 -15.85675 -15.58397 -14.95188 -14.89063 -14.56112 -14.40780 -13.49393 -13.27502 -13.07202 -12.92082 -12.73396 -12.26458 -12.19655 -11.74313 -11.71316 -11.40236 -11.25731 -11.22767 -10.95468 -10.90563 -10.79369 -10.67960 -10.61262 -10.40919 -10.22062 -9.66132 -9.55980 -9.25044 -8.81163 -8.71560 -8.47127 -8.32650 -6.04312 -4.14370 2.99814 3.25522 3.34244 3.38575 3.69175 4.10658 4.38385 4.56697 4.72249 4.85337 5.08160 5.20021 5.22626 5.27480 5.35299 5.40248 5.51581 5.68327 5.76554 5.79206 5.89163 6.09222 6.13220 6.20598 6.22443 6.29671 6.36799 6.48356 6.64451 6.75377 6.79802 6.90980 6.98952 7.01626 7.22456 7.32942 7.53034 7.67339 7.98449 8.03638 8.13595 8.36317 8.68533 8.86647 9.51691 10.97070 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031914 B = 0.004432 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.145841 B = 6315.679763 C = 6566.239510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.092 3.908 4 H 0.092 0.908 5 N -0.665 5.665 6 C 0.043 3.957 7 C -0.145 4.145 8 C -0.142 4.142 9 H 0.092 0.908 10 C 0.518 3.482 11 O -0.554 6.554 12 N -0.716 5.716 13 C 0.132 3.868 14 C 0.056 3.944 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.339 0.661 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.397 0.603 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 11.880 -7.516 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.180 4.180 3 C -0.019 4.019 4 H 0.110 0.890 5 N -0.293 5.293 6 C -0.086 4.086 7 C -0.184 4.184 8 C -0.165 4.165 9 H 0.110 0.890 10 C 0.303 3.697 11 O -0.433 6.433 12 N -0.366 5.366 13 C 0.010 3.990 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.232 0.768 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.867 11.892 -7.780 15.783 hybrid contribution 1.171 -1.378 0.385 1.849 sum -5.696 10.514 -7.395 14.059 Atomic orbital electron populations 1.21681 0.95056 1.01351 1.01985 1.22040 0.96910 0.95259 1.03760 1.22300 0.90592 0.95087 0.93930 0.89034 1.62919 1.40532 1.21144 1.04714 1.23102 0.87963 0.96641 1.00928 1.23109 0.99105 0.99327 0.96849 1.22714 0.98104 0.94769 1.00937 0.88978 1.20199 0.77479 0.87900 0.84088 1.90641 1.53773 1.65525 1.33411 1.46399 1.65096 1.17426 1.07673 1.21698 0.97335 0.79525 1.00466 1.18358 0.93129 0.95264 0.87755 1.21824 0.97890 0.94745 1.04352 1.21823 0.96667 0.95898 1.04377 1.21020 1.43117 0.97608 0.92643 0.92451 1.24876 0.95247 0.97754 0.95618 1.69811 1.48652 1.36631 0.97328 0.86526 0.78570 0.84713 0.78148 1.19774 1.21049 1.21041 0.92961 0.92826 0.92284 0.90889 0.90600 0.84390 0.90236 0.90643 0.90781 0.89521 0.76751 0.92837 0.92883 0.97531 0.89598 0.95505 0.95476 0.89601 0.97514 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.82 37.16 0.37 -1.24 16 2 C -0.14 -1.85 4.13 -26.73 -0.11 -1.96 16 3 C 0.09 1.07 3.38 -66.64 -0.23 0.85 16 4 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 5 N -0.67 -7.23 6.99 -103.13 -0.72 -7.95 16 6 C 0.04 0.42 7.55 -1.90 -0.01 0.40 16 7 C -0.14 -1.66 6.56 -24.87 -0.16 -1.82 16 8 C -0.14 -1.79 3.37 -90.42 -0.31 -2.10 16 9 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 10 C 0.52 8.58 4.70 -10.98 -0.05 8.53 16 11 O -0.55 -11.07 14.98 5.56 0.08 -10.99 16 12 N -0.72 -12.38 4.54 -60.29 -0.27 -12.65 16 13 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 14 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 17 C -0.51 -13.15 8.01 -34.44 -0.28 -13.43 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.43 9.35 55.43 0.52 -22.92 16 21 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.62 7.85 -51.93 -0.41 0.21 16 28 H 0.07 1.09 7.01 -51.93 -0.36 0.73 16 29 H 0.08 1.11 6.97 -51.93 -0.36 0.75 16 30 H 0.34 3.74 8.31 -39.29 -0.33 3.41 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.18 6.93 -51.93 -0.36 0.83 16 35 H 0.40 6.28 6.16 -40.82 -0.25 6.03 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 2.12 6.07 -51.93 -0.31 1.80 16 43 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -27.47 335.25 -8.34 -35.80 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -7.61 Total: 8.41 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.37 Total: -10.37 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.48 Total: -43.52 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.47 -8.34 -35.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690887091.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.549 kcal (2) G-P(sol) polarization free energy of solvation -27.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds