Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 H 1.09002 * 110.06493 * 306.20796 * 3 2 1 5 5 N 1.47899 * 109.91665 * 67.40882 * 3 2 1 6 6 C 1.48531 * 105.82251 * 144.68340 * 5 3 2 7 7 C 1.54934 * 103.22718 * 320.79839 * 6 5 3 8 8 C 1.53985 * 109.92046 * 185.00277 * 3 2 1 9 9 H 1.09004 * 110.30890 * 358.43362 * 8 3 2 10 10 C 1.50699 * 110.31275 * 120.50652 * 8 3 2 11 11 O 1.21275 * 119.99808 * 359.97438 * 10 8 3 12 12 N 1.34779 * 120.00169 * 179.97438 * 10 8 3 13 13 C 1.46494 * 119.99793 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47132 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46674 * 60.00217 * 14 13 12 16 16 C 1.52999 * 109.47023 * 300.00741 * 14 13 12 17 17 C 1.50699 * 109.47508 * 180.02562 * 14 13 12 18 18 H 1.08006 * 119.99513 * 4.92054 * 17 14 13 19 19 C 1.37872 * 120.00063 * 184.92516 * 17 14 13 20 20 N 1.31515 * 120.00337 * 351.63006 * 19 17 14 21 21 Si 1.86802 * 119.99770 * 171.63216 * 19 17 14 22 22 H 1.48493 * 109.47241 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47136 * 120.00228 * 21 19 17 24 24 H 1.48504 * 109.46805 * 239.99480 * 21 19 17 25 25 H 1.08999 * 109.46929 * 59.99640 * 1 2 3 26 26 H 1.08994 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47018 * 300.00335 * 1 2 3 28 28 H 1.09000 * 109.47158 * 239.99981 * 2 1 3 29 29 H 1.08999 * 109.46929 * 120.00360 * 2 1 3 30 30 H 1.00901 * 111.00459 * 265.19810 * 5 3 2 31 31 H 1.09002 * 110.66433 * 79.22930 * 6 5 3 32 32 H 1.09000 * 110.66839 * 202.35682 * 6 5 3 33 33 H 1.09007 * 110.72036 * 279.05140 * 7 6 5 34 34 H 1.08998 * 110.72668 * 155.76688 * 7 6 5 35 35 H 0.96999 * 119.99985 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47384 * 60.00698 * 13 12 10 37 37 H 1.09000 * 109.47702 * 300.00540 * 13 12 10 38 38 H 1.09006 * 109.47248 * 172.91690 * 15 14 13 39 39 H 1.08997 * 109.47784 * 292.92055 * 15 14 13 40 40 H 1.08998 * 109.47481 * 52.92180 * 15 14 13 41 41 H 1.09000 * 109.47152 * 307.35102 * 16 14 13 42 42 H 1.09000 * 109.47578 * 67.35989 * 16 14 13 43 43 H 1.09008 * 109.46706 * 187.35572 * 16 14 13 44 44 H 0.97000 * 119.99703 * 5.71819 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5946 1.9967 -0.8261 5 7 1.7045 2.0955 1.2838 6 6 2.8410 3.0028 1.5860 7 6 4.0778 2.1813 1.1431 8 6 3.5747 1.4562 -0.1262 9 1 3.9607 0.4374 -0.1598 10 6 3.9913 2.2134 -1.3608 11 8 3.1502 2.7030 -2.0845 12 7 5.2985 2.3465 -1.6607 13 6 5.7033 3.0821 -2.8612 14 6 7.2297 3.0840 -2.9677 15 6 7.7363 1.6432 -3.0574 16 6 7.8264 3.7584 -1.7307 17 6 7.6462 3.8413 -4.2022 18 1 6.9034 4.3449 -4.8031 19 6 8.9755 3.8911 -4.5646 20 7 9.8968 3.4219 -3.7518 21 14 9.4680 4.6251 -6.2103 22 1 8.2530 5.0783 -6.9337 23 1 10.3714 5.7821 -5.9857 24 1 10.1714 3.5979 -7.0198 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.8398 2.6107 1.2124 31 1 2.7631 3.9230 1.0070 32 1 2.8860 3.2210 2.6530 33 1 4.3587 1.4620 1.9125 34 1 4.9133 2.8397 0.9056 35 1 5.9712 1.9547 -1.0821 36 1 5.3421 4.1085 -2.7975 37 1 5.2786 2.6015 -3.7425 38 1 8.8075 1.6465 -3.2592 39 1 7.5460 1.1316 -2.1139 40 1 7.2166 1.1247 -3.8630 41 1 7.3669 4.7372 -1.5932 42 1 7.6359 3.1410 -0.8528 43 1 8.9016 3.8773 -1.8649 44 1 9.6371 2.9664 -2.9357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690887093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -50.637742 kcal Electronic energy + Delta-G solvation = -21536.140066 eV Core-core repulsion = 18487.647753 eV Total energy + Delta-G solvation = -3048.492313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.24349 -37.99514 -36.63958 -33.75353 -33.19439 -31.16753 -30.07348 -28.10697 -26.10124 -26.07454 -24.69016 -23.21691 -21.88887 -20.52673 -19.55771 -18.95325 -17.66642 -16.69984 -16.11476 -15.57769 -15.10281 -14.77193 -14.40805 -13.79119 -13.62962 -13.43751 -13.06116 -12.85131 -12.73341 -12.59352 -12.56559 -12.15636 -11.71958 -11.60302 -11.32282 -11.29835 -11.01671 -10.97924 -10.87787 -10.71798 -10.65283 -10.64178 -10.15544 -9.93933 -9.62386 -9.45680 -8.64281 -8.59497 -8.51397 -8.23754 -6.30390 -4.14728 2.90834 3.41386 3.43681 3.54725 3.58905 4.10863 4.47003 4.50362 4.57588 4.88715 4.97557 5.15998 5.17894 5.28278 5.31916 5.38030 5.53491 5.61896 5.75513 5.79497 5.86641 5.91565 5.94444 5.98827 6.11169 6.11768 6.20878 6.25647 6.51319 6.56528 6.63819 6.68077 6.73963 6.83446 7.02673 7.05066 7.18873 7.45391 7.61129 7.93235 8.15080 8.36876 8.56808 8.80407 9.55814 10.95851 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.003992 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.734647 B = 7012.397579 C = 7247.663680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.076 3.924 4 H 0.078 0.922 5 N -0.665 5.665 6 C 0.038 3.962 7 C -0.114 4.114 8 C -0.120 4.120 9 H 0.103 0.897 10 C 0.510 3.490 11 O -0.551 6.551 12 N -0.716 5.716 13 C 0.139 3.861 14 C 0.041 3.959 15 C -0.146 4.146 16 C -0.143 4.143 17 C -0.587 4.587 18 H 0.053 0.947 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 1.070 2.930 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.287 1.287 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.337 0.663 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.016 0.984 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.015 0.985 43 H 0.071 0.929 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -5.215 10.478 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.034 4.034 4 H 0.096 0.904 5 N -0.294 5.294 6 C -0.091 4.091 7 C -0.152 4.152 8 C -0.142 4.142 9 H 0.121 0.879 10 C 0.295 3.705 11 O -0.429 6.429 12 N -0.366 5.366 13 C 0.017 3.983 14 C 0.040 3.960 15 C -0.204 4.204 16 C -0.202 4.202 17 C -0.625 4.625 18 H 0.071 0.929 19 C -0.178 4.178 20 N -0.558 5.558 21 Si 0.898 3.102 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.213 1.213 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.152 0.848 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.232 0.768 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.090 0.910 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.214 -5.005 9.453 15.497 hybrid contribution -1.068 0.131 0.510 1.191 sum -12.282 -4.873 9.963 16.548 Atomic orbital electron populations 1.21720 0.95815 1.01316 1.01762 1.21516 0.96123 0.95120 1.01730 1.22226 0.92677 0.96451 0.92085 0.90372 1.63046 1.04776 1.30584 1.31042 1.23009 0.90631 0.94488 1.01011 1.22504 0.97834 0.99126 0.95776 1.22197 0.97237 1.00896 0.93915 0.87863 1.20412 0.83009 0.80528 0.86553 1.90637 1.50978 1.49465 1.51851 1.46280 1.06490 1.55678 1.28173 1.21604 0.97244 0.94702 0.84747 1.18531 0.88726 0.93264 0.95481 1.22039 1.03610 0.97149 0.97563 1.22081 1.03398 0.98674 0.96001 1.21798 0.95676 1.35654 1.09413 0.92915 1.25670 0.92571 0.96439 1.03073 1.70825 1.36053 1.35886 1.12997 0.83535 0.75355 0.76372 0.74899 1.21514 1.21420 1.21344 0.93111 0.93045 0.92274 0.91995 0.91388 0.84795 0.93879 0.89881 0.89836 0.90442 0.76804 0.92670 0.92516 0.90851 0.96484 0.94419 0.94547 0.96643 0.91033 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.82 37.16 0.37 -1.05 16 2 C -0.11 -1.14 5.38 -26.73 -0.14 -1.28 16 3 C 0.08 0.93 2.87 -66.65 -0.19 0.74 16 4 H 0.08 1.16 6.42 -51.93 -0.33 0.83 16 5 N -0.67 -7.22 6.73 -103.14 -0.69 -7.91 16 6 C 0.04 0.41 7.55 -1.90 -0.01 0.39 16 7 C -0.11 -1.26 6.59 -24.87 -0.16 -1.42 16 8 C -0.12 -1.53 3.02 -90.42 -0.27 -1.80 16 9 H 0.10 1.17 7.69 -51.93 -0.40 0.77 16 10 C 0.51 8.57 7.06 -10.98 -0.08 8.49 16 11 O -0.55 -11.24 15.23 5.56 0.08 -11.16 16 12 N -0.72 -12.33 4.82 -60.30 -0.29 -12.62 16 13 C 0.14 2.94 4.50 -4.04 -0.02 2.92 16 14 C 0.04 0.93 0.50 -155.66 -0.08 0.85 16 15 C -0.15 -3.19 7.85 37.16 0.29 -2.89 16 16 C -0.14 -3.13 7.91 37.16 0.29 -2.83 16 17 C -0.59 -15.56 8.00 -34.44 -0.28 -15.84 16 18 H 0.05 1.43 7.76 -52.48 -0.41 1.03 16 19 C 0.03 0.71 5.07 -17.82 -0.09 0.62 16 20 N -0.92 -25.64 12.17 55.43 0.67 -24.96 16 21 Si 1.07 24.45 29.91 -169.99 -5.08 19.36 16 22 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.54 7.85 -51.92 -0.41 0.13 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.34 3.31 8.92 -39.29 -0.35 2.96 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 35 H 0.40 6.12 6.29 -40.82 -0.26 5.86 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.78 5.17 -51.93 -0.27 1.51 16 39 H 0.02 0.31 7.04 -51.93 -0.37 -0.06 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 43 H 0.07 1.73 5.30 -51.92 -0.28 1.46 16 44 H 0.28 7.57 3.59 -40.82 -0.15 7.43 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -29.28 336.63 -8.03 -37.31 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.42 Total: 8.01 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.38 Total: -13.11 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.31 Total: -45.49 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.28 -8.03 -37.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690887093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.323 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds