Wall clock time and date at job start Mon Mar 30 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47577 * 2 1 4 4 H 1.09002 * 110.06493 * 306.20796 * 3 2 1 5 5 N 1.47899 * 109.91665 * 67.40882 * 3 2 1 6 6 C 1.48531 * 105.82251 * 144.68340 * 5 3 2 7 7 C 1.54934 * 103.22718 * 320.79839 * 6 5 3 8 8 C 1.53985 * 109.92046 * 185.00277 * 3 2 1 9 9 H 1.09004 * 110.30890 * 358.43362 * 8 3 2 10 10 C 1.50699 * 110.31275 * 120.50652 * 8 3 2 11 11 O 1.21275 * 119.99808 * 359.97438 * 10 8 3 12 12 N 1.34779 * 120.00169 * 179.97438 * 10 8 3 13 13 C 1.46494 * 119.99793 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47132 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46674 * 60.00217 * 14 13 12 16 16 C 1.52999 * 109.47023 * 300.00741 * 14 13 12 17 17 C 1.50699 * 109.47508 * 180.02562 * 14 13 12 18 18 H 1.08006 * 119.99513 * 4.92054 * 17 14 13 19 19 C 1.37872 * 120.00063 * 184.92516 * 17 14 13 20 20 N 1.31515 * 120.00337 * 351.63006 * 19 17 14 21 21 Si 1.86802 * 119.99770 * 171.63216 * 19 17 14 22 22 H 1.48493 * 109.47241 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47136 * 120.00228 * 21 19 17 24 24 H 1.48504 * 109.46805 * 239.99480 * 21 19 17 25 25 H 1.08999 * 109.46929 * 59.99640 * 1 2 3 26 26 H 1.08994 * 109.47223 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.47018 * 300.00335 * 1 2 3 28 28 H 1.09000 * 109.47158 * 239.99981 * 2 1 3 29 29 H 1.08999 * 109.46929 * 120.00360 * 2 1 3 30 30 H 1.00901 * 111.00459 * 265.19810 * 5 3 2 31 31 H 1.09002 * 110.66433 * 79.22930 * 6 5 3 32 32 H 1.09000 * 110.66839 * 202.35682 * 6 5 3 33 33 H 1.09007 * 110.72036 * 279.05140 * 7 6 5 34 34 H 1.08998 * 110.72668 * 155.76688 * 7 6 5 35 35 H 0.96999 * 119.99985 * 0.02562 * 12 10 8 36 36 H 1.09000 * 109.47384 * 60.00698 * 13 12 10 37 37 H 1.09000 * 109.47702 * 300.00540 * 13 12 10 38 38 H 1.09006 * 109.47248 * 172.91690 * 15 14 13 39 39 H 1.08997 * 109.47784 * 292.92055 * 15 14 13 40 40 H 1.08998 * 109.47481 * 52.92180 * 15 14 13 41 41 H 1.09000 * 109.47152 * 307.35102 * 16 14 13 42 42 H 1.09000 * 109.47578 * 67.35989 * 16 14 13 43 43 H 1.09008 * 109.46706 * 187.35572 * 16 14 13 44 44 H 0.97000 * 119.99703 * 5.71819 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5946 1.9967 -0.8261 5 7 1.7045 2.0955 1.2838 6 6 2.8410 3.0028 1.5860 7 6 4.0778 2.1813 1.1431 8 6 3.5747 1.4562 -0.1262 9 1 3.9607 0.4374 -0.1598 10 6 3.9913 2.2134 -1.3608 11 8 3.1502 2.7030 -2.0845 12 7 5.2985 2.3465 -1.6607 13 6 5.7033 3.0821 -2.8612 14 6 7.2297 3.0840 -2.9677 15 6 7.7363 1.6432 -3.0574 16 6 7.8264 3.7584 -1.7307 17 6 7.6462 3.8413 -4.2022 18 1 6.9034 4.3449 -4.8031 19 6 8.9755 3.8911 -4.5646 20 7 9.8968 3.4219 -3.7518 21 14 9.4680 4.6251 -6.2103 22 1 8.2530 5.0783 -6.9337 23 1 10.3714 5.7821 -5.9857 24 1 10.1714 3.5979 -7.0198 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.8398 2.6107 1.2124 31 1 2.7631 3.9230 1.0070 32 1 2.8860 3.2210 2.6530 33 1 4.3587 1.4620 1.9125 34 1 4.9133 2.8397 0.9056 35 1 5.9712 1.9547 -1.0821 36 1 5.3421 4.1085 -2.7975 37 1 5.2786 2.6015 -3.7425 38 1 8.8075 1.6465 -3.2592 39 1 7.5460 1.1316 -2.1139 40 1 7.2166 1.1247 -3.8630 41 1 7.3669 4.7372 -1.5932 42 1 7.6359 3.1410 -0.8528 43 1 8.9016 3.8773 -1.8649 44 1 9.6371 2.9664 -2.9357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690887093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:05 Heat of formation + Delta-G solvation = -69.705034 kcal Electronic energy + Delta-G solvation = -21536.966886 eV Core-core repulsion = 18487.647753 eV Total energy + Delta-G solvation = -3049.319133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.49454 -39.32266 -38.24835 -35.36145 -34.10578 -32.71250 -31.39609 -28.98636 -27.88822 -27.85149 -26.45777 -24.29510 -22.93257 -21.61335 -20.79623 -20.72184 -19.11911 -18.22815 -17.29614 -16.93421 -16.47632 -15.78632 -15.68098 -15.63933 -15.08945 -14.64150 -14.62593 -14.30911 -14.16822 -13.65970 -13.48879 -13.37334 -13.23065 -13.05056 -12.78071 -12.64152 -12.53143 -12.44468 -12.18684 -11.95410 -11.88761 -11.79344 -11.73733 -11.58154 -11.42652 -10.89555 -10.52952 -10.25342 -10.08002 -9.55003 -8.40536 -6.26238 1.55132 1.56273 1.61232 1.78573 2.18499 2.59090 3.19421 3.22757 3.54101 3.64717 3.77014 4.10524 4.14565 4.22962 4.29708 4.33342 4.42479 4.45856 4.52301 4.65433 4.76524 4.79463 4.80259 4.86489 4.89609 4.94181 4.95230 5.06083 5.09379 5.13718 5.14969 5.19019 5.29682 5.40713 5.45972 5.62074 5.75757 5.80849 6.14718 6.30487 6.32974 6.54103 6.75116 7.20198 7.49368 8.87558 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036510 B = 0.003992 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.734647 B = 7012.397579 C = 7247.663680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.076 3.924 4 H 0.047 0.953 5 N -0.657 5.657 6 C 0.035 3.965 7 C -0.110 4.110 8 C -0.114 4.114 9 H 0.126 0.874 10 C 0.509 3.491 11 O -0.590 6.590 12 N -0.708 5.708 13 C 0.157 3.843 14 C 0.035 3.965 15 C -0.136 4.136 16 C -0.133 4.133 17 C -0.606 4.606 18 H 0.035 0.965 19 C -0.013 4.013 20 N -0.937 5.937 21 Si 1.107 2.893 22 H -0.282 1.282 23 H -0.282 1.282 24 H -0.280 1.280 25 H 0.040 0.960 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.342 0.658 31 H 0.024 0.976 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.409 0.591 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.030 0.970 41 H 0.028 0.972 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 -6.402 12.260 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.034 4.034 4 H 0.065 0.935 5 N -0.286 5.286 6 C -0.094 4.094 7 C -0.148 4.148 8 C -0.136 4.136 9 H 0.144 0.856 10 C 0.296 3.704 11 O -0.472 6.472 12 N -0.359 5.359 13 C 0.033 3.967 14 C 0.034 3.966 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.644 4.644 18 H 0.053 0.947 19 C -0.213 4.213 20 N -0.578 5.578 21 Si 0.931 3.069 22 H -0.208 1.208 23 H -0.208 1.208 24 H -0.206 1.206 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.158 0.842 31 H 0.042 0.958 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.519 -6.207 11.269 17.269 hybrid contribution -1.038 0.515 -0.024 1.159 sum -12.557 -5.693 11.246 17.792 Atomic orbital electron populations 1.21697 0.95098 1.02066 1.01502 1.21495 0.96787 0.93827 1.02036 1.22180 0.92228 0.97288 0.91704 0.93497 1.63114 1.05125 1.30622 1.29784 1.23085 0.90605 0.93682 1.02002 1.22565 0.97596 0.99402 0.95252 1.22251 0.97677 1.01397 0.92287 0.85629 1.21181 0.82088 0.79820 0.87279 1.90628 1.51955 1.51079 1.53497 1.46072 1.07275 1.55400 1.27120 1.21111 0.95929 0.93899 0.85780 1.18536 0.89743 0.93632 0.94691 1.21892 1.01701 0.96598 0.99196 1.21916 1.01416 0.98924 0.96847 1.22111 0.95504 1.35990 1.10805 0.94696 1.26716 0.92871 0.96582 1.05167 1.70878 1.36449 1.36910 1.13575 0.83036 0.75473 0.76160 0.72213 1.20787 1.20812 1.20609 0.94087 0.91788 0.91840 0.92373 0.90259 0.84217 0.95758 0.87746 0.87290 0.90849 0.75347 0.94676 0.94474 0.93163 0.92923 0.95118 0.95280 0.93016 0.93399 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.82 71.98 0.71 -1.82 16 2 C -0.10 -1.98 5.38 30.59 0.16 -1.82 16 3 C 0.08 1.76 2.87 45.06 0.13 1.89 16 4 H 0.05 1.40 6.42 -2.39 -0.02 1.38 16 5 N -0.66 -12.87 6.73 -480.23 -3.23 -16.10 16 6 C 0.04 0.68 7.55 86.65 0.65 1.34 16 7 C -0.11 -2.08 6.59 31.80 0.21 -1.87 16 8 C -0.11 -2.64 3.02 -10.66 -0.03 -2.68 16 9 H 0.13 2.40 7.69 -2.38 -0.02 2.38 16 10 C 0.51 16.66 7.06 87.66 0.62 17.28 16 11 O -0.59 -24.46 15.23 -3.01 -0.05 -24.51 16 12 N -0.71 -23.48 4.82 -463.07 -2.23 -25.71 16 13 C 0.16 6.65 4.50 86.38 0.39 7.04 16 14 C 0.03 1.58 0.50 -52.93 -0.03 1.56 16 15 C -0.14 -5.82 7.85 71.98 0.57 -5.25 16 16 C -0.13 -5.68 7.91 71.98 0.57 -5.11 16 17 C -0.61 -32.62 8.00 25.60 0.20 -32.42 16 18 H 0.03 1.95 7.76 -2.91 -0.02 1.93 16 19 C -0.01 -0.72 5.07 84.65 0.43 -0.29 16 20 N -0.94 -52.52 12.17 21.45 0.26 -52.26 16 21 Si 1.11 49.46 29.91 68.60 2.05 51.51 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.03 7.85 -2.38 -0.02 1.01 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.34 6.21 8.92 -89.69 -0.80 5.41 16 31 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.48 7.68 -2.39 -0.02 1.46 16 35 H 0.41 11.49 6.29 -92.71 -0.58 10.91 16 36 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.05 2.40 5.17 -2.38 -0.01 2.39 16 39 H 0.05 1.83 7.04 -2.39 -0.02 1.81 16 40 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.78 7.05 -2.39 -0.02 1.77 16 43 H 0.05 2.29 5.30 -2.38 -0.01 2.28 16 44 H 0.28 15.16 3.59 -92.71 -0.33 14.82 16 Total: -1.00 -63.93 336.63 1.42 -62.51 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.04 Total: 26.72 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 4.58 Total: -22.15 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -5.20 Total: -94.07 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.51 kcal Total: -63.93 1.42 -62.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690887093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.200 kcal (2) G-P(sol) polarization free energy of solvation -63.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds