Wall clock time and date at job start Mon Mar 30 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 H 1.08998 * 110.33447 * 54.29492 * 3 2 1 5 5 N 1.47846 * 110.37092 * 292.04434 * 3 2 1 6 6 C 1.47443 * 108.56909 * 217.07291 * 5 3 2 7 7 C 1.54325 * 107.23063 * 0.99103 * 6 5 3 8 8 C 1.54900 * 110.37399 * 176.55221 * 3 2 1 9 9 H 1.09000 * 110.99442 * 37.81179 * 8 3 2 10 10 C 1.50699 * 110.99137 * 273.98670 * 8 3 2 11 11 O 1.21281 * 119.99835 * 336.48936 * 10 8 3 12 12 N 1.34783 * 120.00012 * 156.48621 * 10 8 3 13 13 C 1.46495 * 119.99622 * 5.27199 * 12 10 8 14 14 C 1.50700 * 109.47078 * 90.00216 * 13 12 10 15 15 H 1.08000 * 120.00264 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00238 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00325 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99715 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.46826 * 89.99798 * 18 16 14 20 20 H 1.48498 * 109.47341 * 209.99404 * 18 16 14 21 21 H 1.48501 * 109.47411 * 329.99917 * 18 16 14 22 22 C 1.46498 * 119.99788 * 185.27081 * 12 10 8 23 23 C 1.52998 * 109.47415 * 299.84706 * 22 12 10 24 24 C 1.52999 * 109.46885 * 59.85085 * 22 12 10 25 25 H 1.09006 * 109.46920 * 300.00262 * 1 2 3 26 26 H 1.08997 * 109.46876 * 60.00472 * 1 2 3 27 27 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47032 * 239.99504 * 2 1 3 29 29 H 1.08997 * 109.46876 * 119.99528 * 2 1 3 30 30 H 1.00901 * 111.00422 * 339.34211 * 5 3 2 31 31 H 1.08998 * 109.88850 * 120.39426 * 6 5 3 32 32 H 1.08998 * 109.89141 * 241.42346 * 6 5 3 33 33 H 1.08998 * 110.70567 * 140.66173 * 7 6 5 34 34 H 1.08996 * 110.70160 * 263.89939 * 7 6 5 35 35 H 1.09003 * 109.47021 * 210.00014 * 13 12 10 36 36 H 1.08997 * 109.47616 * 330.00137 * 13 12 10 37 37 H 0.96995 * 120.00347 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.46714 * 179.84475 * 22 12 10 39 39 H 1.08993 * 109.46845 * 66.56394 * 23 22 12 40 40 H 1.08996 * 109.46865 * 186.56353 * 23 22 12 41 41 H 1.09004 * 109.46939 * 306.56654 * 23 22 12 42 42 H 1.08998 * 109.47681 * 53.90693 * 24 22 12 43 43 H 1.09002 * 109.46819 * 173.90504 * 24 22 12 44 44 H 1.09001 * 109.47093 * 293.90077 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6040 1.9984 0.8299 5 7 1.7212 2.1011 -1.2847 6 6 2.8420 2.9870 -1.6491 7 6 3.9123 2.8474 -0.5461 8 6 3.5864 1.4678 0.0873 9 1 4.0238 0.6579 -0.4966 10 6 4.0472 1.4069 1.5208 11 8 3.3078 1.7691 2.4114 12 7 5.2810 0.9499 1.8133 13 6 6.2153 0.6215 0.7338 14 6 7.0254 1.8425 0.3817 15 1 6.8605 2.7705 0.9090 16 6 7.9772 1.7750 -0.6136 17 7 8.6837 2.8406 -0.9212 18 14 8.2620 0.1701 -1.5262 19 1 7.3734 0.1121 -2.7147 20 1 9.6790 0.0941 -1.9635 21 1 7.9597 -0.9716 -0.6260 22 6 5.6877 0.7818 3.2106 23 6 5.6167 2.1310 3.9284 24 6 4.7496 -0.2120 3.8986 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.5496 1.4189 -2.0080 31 1 3.2577 2.6830 -2.6097 32 1 2.4960 4.0191 -1.7048 33 1 4.9131 2.8470 -0.9780 34 1 3.8104 3.6424 0.1925 35 1 6.8830 -0.1755 1.0611 36 1 5.6570 0.2910 -0.1420 37 1 9.3530 2.7932 -1.6216 38 1 6.7091 0.4032 3.2486 39 1 4.5777 2.4541 3.9926 40 1 6.0286 2.0305 4.9325 41 1 6.1931 2.8697 3.3714 42 1 4.7175 -1.1383 3.3251 43 1 5.1149 -0.4199 4.9043 44 1 3.7481 0.2143 3.9568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690899743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:08 Heat of formation + Delta-G solvation = -64.665503 kcal Electronic energy + Delta-G solvation = -22474.900915 eV Core-core repulsion = 19425.800312 eV Total energy + Delta-G solvation = -3049.100603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49464 -39.26965 -37.00358 -35.02351 -34.19313 -33.52529 -31.03326 -29.47059 -28.88040 -28.04884 -24.93824 -24.18981 -23.37628 -22.02326 -21.33914 -19.58603 -19.00346 -18.00105 -17.29925 -16.88275 -16.33266 -16.04867 -15.53385 -15.29786 -14.85426 -14.70543 -14.48501 -14.31772 -14.01552 -13.90551 -13.73305 -13.44125 -13.31054 -13.16201 -12.89001 -12.65346 -12.61147 -12.42086 -12.31587 -12.14487 -12.00258 -11.89627 -11.75319 -11.67624 -11.54980 -11.47041 -10.77225 -10.38094 -9.45375 -9.37672 -8.28276 -6.34137 1.37151 1.39912 1.48444 1.73372 2.27341 2.33537 3.04945 3.18971 3.61858 3.71343 3.87216 3.95841 4.17268 4.22511 4.23259 4.28399 4.37042 4.37850 4.44781 4.62278 4.63874 4.75984 4.82581 4.88819 4.90031 4.91264 4.94487 4.99787 5.02899 5.12875 5.15230 5.17445 5.29049 5.37176 5.38972 5.45895 5.46890 5.83090 5.85241 6.21921 6.53403 6.65117 6.74075 7.27029 7.40294 8.87808 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.008349 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.296501 B = 3353.002448 C = 4355.953982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.103 3.897 4 H 0.075 0.925 5 N -0.672 5.672 6 C 0.056 3.944 7 C -0.117 4.117 8 C -0.133 4.133 9 H 0.099 0.901 10 C 0.530 3.470 11 O -0.577 6.577 12 N -0.593 5.593 13 C 0.215 3.785 14 C -0.527 4.527 15 H 0.028 0.972 16 C 0.021 3.979 17 N -0.941 5.941 18 Si 0.934 3.066 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.241 1.241 22 C 0.136 3.864 23 C -0.154 4.154 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.348 0.652 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.038 -8.839 0.381 14.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.008 4.008 4 H 0.093 0.907 5 N -0.301 5.301 6 C -0.074 4.074 7 C -0.156 4.156 8 C -0.156 4.156 9 H 0.117 0.883 10 C 0.319 3.681 11 O -0.458 6.458 12 N -0.323 5.323 13 C 0.093 3.907 14 C -0.566 4.566 15 H 0.047 0.953 16 C -0.177 4.177 17 N -0.581 5.581 18 Si 0.757 3.243 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.164 1.164 22 C 0.033 3.967 23 C -0.212 4.212 24 C -0.208 4.208 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.165 0.835 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.688 -8.087 1.005 14.248 hybrid contribution 1.743 -0.429 -0.666 1.914 sum -9.945 -8.516 0.338 13.097 Atomic orbital electron populations 1.21645 0.93782 1.01994 1.02194 1.21739 0.97878 0.94060 1.02346 1.22333 0.89729 0.95460 0.93241 0.90700 1.61893 1.40282 1.23239 1.04722 1.22574 0.89027 0.98821 0.96937 1.22573 1.00410 0.94590 0.98066 1.22932 0.99072 1.00042 0.93559 0.88273 1.20380 0.81094 0.75763 0.90897 1.90523 1.55875 1.50013 1.49426 1.48128 1.13134 1.63717 1.07365 1.19691 0.88756 0.95536 0.86718 1.21410 1.19462 0.96619 1.19080 0.95322 1.25715 0.94877 0.99714 0.97433 1.70048 1.24579 1.31323 1.32146 0.85911 0.77882 0.80502 0.79970 1.18567 1.21369 1.16381 1.21112 0.99043 0.96133 0.80411 1.22070 1.02130 0.96731 1.00284 1.22060 0.99971 0.97873 1.00946 0.93652 0.91544 0.91544 0.90573 0.92446 0.83461 0.91257 0.90326 0.91006 0.93656 0.93964 0.93826 0.92415 0.89559 0.92242 0.90091 0.95452 0.92449 0.89705 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.83 71.98 0.71 -2.12 16 2 C -0.12 -2.94 5.31 30.60 0.16 -2.78 16 3 C 0.10 3.06 2.69 45.38 0.12 3.19 16 4 H 0.07 2.67 7.21 -2.39 -0.02 2.65 16 5 N -0.67 -17.79 6.95 -482.47 -3.35 -21.14 16 6 C 0.06 1.61 7.59 86.65 0.66 2.27 16 7 C -0.12 -4.35 6.41 31.82 0.20 -4.15 16 8 C -0.13 -4.66 2.09 -10.11 -0.02 -4.68 16 9 H 0.10 3.33 6.09 -2.39 -0.01 3.31 16 10 C 0.53 21.12 6.29 87.66 0.55 21.67 16 11 O -0.58 -24.68 12.19 -3.03 -0.04 -24.72 16 12 N -0.59 -23.73 2.41 -802.16 -1.93 -25.66 16 13 C 0.22 9.11 4.09 85.63 0.35 9.46 16 14 C -0.53 -27.50 9.09 25.60 0.23 -27.27 16 15 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 16 C 0.02 1.14 5.47 84.66 0.46 1.60 16 17 N -0.94 -55.09 13.96 21.45 0.30 -54.79 16 18 Si 0.93 39.11 27.47 68.60 1.88 40.99 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 22 C 0.14 4.84 3.28 44.99 0.15 4.98 16 23 C -0.15 -5.64 9.00 71.98 0.65 -4.99 16 24 C -0.15 -4.42 9.03 71.98 0.65 -3.77 16 25 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.27 7.87 -2.39 -0.02 1.25 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.58 8.02 -2.39 -0.02 1.56 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.35 7.52 8.27 -89.69 -0.74 6.78 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 3.06 7.27 -2.39 -0.02 3.04 16 34 H 0.04 1.86 8.03 -2.39 -0.02 1.84 16 35 H 0.04 1.72 6.98 -2.39 -0.02 1.70 16 36 H 0.04 1.74 5.23 -2.39 -0.01 1.73 16 37 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.09 2.97 7.79 -2.39 -0.02 2.96 16 39 H 0.06 2.34 6.23 -2.39 -0.01 2.32 16 40 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.05 1.83 6.52 -2.39 -0.02 1.81 16 Total: -1.00 -62.24 339.03 1.91 -60.33 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.17 Total: 31.56 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.87 Total: -6.58 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.98 Total: -101.58 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.72 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 40.99 kcal Total: -62.24 1.91 -60.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690899743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.334 kcal (2) G-P(sol) polarization free energy of solvation -62.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds