Wall clock time and date at job start Mon Mar 30 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47293 * 2 1 4 4 H 1.09000 * 110.36817 * 304.10268 * 3 2 1 5 5 N 1.48559 * 110.41104 * 66.45500 * 3 2 1 6 6 C 1.48563 * 104.22366 * 158.37953 * 5 3 2 7 7 C 1.54379 * 104.59255 * 320.51583 * 6 5 3 8 8 C 1.54264 * 105.06221 * 23.85602 * 7 6 5 9 9 H 1.09000 * 110.40562 * 241.06330 * 8 7 6 10 10 C 1.50695 * 110.32515 * 118.89363 * 8 7 6 11 11 O 1.21286 * 120.00000 * 256.68854 * 10 8 7 12 12 N 1.34774 * 119.99924 * 76.69693 * 10 8 7 13 13 C 1.46504 * 120.00242 * 3.96648 * 12 10 8 14 14 C 1.50699 * 109.46612 * 90.00216 * 13 12 10 15 15 H 1.07997 * 120.00538 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99617 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99597 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47244 * 89.99859 * 18 16 14 20 20 H 1.48501 * 109.47502 * 210.00152 * 18 16 14 21 21 H 1.48500 * 109.47049 * 330.00342 * 18 16 14 22 22 C 1.46504 * 119.99662 * 183.97217 * 12 10 8 23 23 C 1.52998 * 109.47239 * 300.32549 * 22 12 10 24 24 C 1.53003 * 109.47142 * 60.33117 * 22 12 10 25 25 H 1.09003 * 109.46694 * 59.99259 * 1 2 3 26 26 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46784 * 299.99968 * 1 2 3 28 28 H 1.08997 * 109.47145 * 239.99922 * 2 1 3 29 29 H 1.09000 * 109.47055 * 119.99866 * 2 1 3 30 30 H 1.00906 * 111.00307 * 277.93539 * 5 3 2 31 31 H 1.09004 * 110.40794 * 79.29484 * 6 5 3 32 32 H 1.08997 * 110.41117 * 201.73651 * 6 5 3 33 33 H 1.08992 * 110.32617 * 264.95159 * 7 6 5 34 34 H 1.09004 * 110.32101 * 142.74593 * 7 6 5 35 35 H 1.09000 * 109.46759 * 210.00382 * 13 12 10 36 36 H 1.08996 * 109.46869 * 330.00397 * 13 12 10 37 37 H 0.97001 * 119.99494 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.46706 * 180.32761 * 22 12 10 39 39 H 1.09005 * 109.46837 * 66.77362 * 23 22 12 40 40 H 1.08994 * 109.47274 * 186.76816 * 23 22 12 41 41 H 1.09002 * 109.47149 * 306.77503 * 23 22 12 42 42 H 1.08998 * 109.47121 * 53.66631 * 24 22 12 43 43 H 1.09006 * 109.46964 * 173.66899 * 24 22 12 44 44 H 1.08997 * 109.46745 * 293.66547 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6264 1.9911 -0.8461 5 7 1.6884 2.1163 1.2764 6 6 2.6547 3.2405 1.3740 7 6 3.9874 2.6535 0.8614 8 6 3.5831 1.4707 -0.0426 9 1 3.9896 0.5377 0.3478 10 6 4.0637 1.7010 -1.4521 11 8 3.2816 2.0531 -2.3096 12 7 5.3626 1.5154 -1.7600 13 6 6.2902 1.0066 -0.7465 14 6 6.3218 -0.4989 -0.8053 15 1 5.7123 -1.0242 -1.5257 16 6 7.1297 -1.2057 0.0601 17 7 7.8722 -0.5660 0.9370 18 14 7.1695 -3.0718 -0.0131 19 1 8.2262 -3.5076 -0.9612 20 1 7.4624 -3.6141 1.3380 21 1 5.8516 -3.5773 -0.4744 22 6 5.8470 1.8226 -3.1080 23 6 5.0932 0.9671 -4.1282 24 6 5.6100 3.3037 -3.4099 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 0.7387 2.4567 1.2560 31 1 2.3372 4.0706 0.7428 32 1 2.7559 3.5660 2.4093 33 1 4.5925 2.3019 1.6969 34 1 4.5335 3.4007 0.2854 35 1 7.2889 1.3988 -0.9385 36 1 5.9587 1.3248 0.2418 37 1 8.4403 -1.0633 1.5460 38 1 6.9134 1.6055 -3.1691 39 1 4.0459 1.2687 -4.1521 40 1 5.5338 1.1061 -5.1153 41 1 5.1625 -0.0829 -3.8438 42 1 6.0527 3.9108 -2.6203 43 1 6.0700 3.5580 -4.3649 44 1 4.5385 3.4973 -3.4598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690899746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:11 Heat of formation + Delta-G solvation = -68.197716 kcal Electronic energy + Delta-G solvation = -22408.289129 eV Core-core repulsion = 19359.035358 eV Total energy + Delta-G solvation = -3049.253771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48564 -39.11856 -36.93904 -35.06931 -34.20805 -33.38271 -31.12727 -28.97529 -28.80693 -28.03484 -25.15071 -24.48755 -23.19999 -22.13450 -21.05137 -19.54939 -18.68957 -17.95672 -17.14576 -16.79578 -16.46068 -16.17652 -15.76335 -15.41787 -14.76000 -14.44678 -14.25389 -14.11682 -13.98677 -13.83662 -13.72865 -13.43590 -13.23596 -12.99329 -12.89840 -12.73380 -12.65495 -12.51388 -12.23760 -12.14316 -12.04596 -11.86593 -11.71701 -11.63659 -11.60105 -11.51204 -10.62289 -10.30642 -9.52569 -9.41564 -8.20283 -6.34181 1.38641 1.41075 1.50105 1.78824 2.28929 2.43404 3.09579 3.23792 3.62371 3.78259 3.82207 4.08574 4.16223 4.25630 4.29578 4.31015 4.40145 4.45828 4.54736 4.71272 4.73984 4.76061 4.76851 4.88949 4.94342 4.98849 4.99824 5.05061 5.10883 5.14171 5.14925 5.21163 5.26904 5.30432 5.40574 5.45118 5.67747 5.77956 5.96231 6.07554 6.46165 6.60708 6.85065 7.33058 7.45081 8.84867 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013163 B = 0.008055 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.584715 B = 3475.438258 C = 4333.867278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.088 3.912 4 H 0.057 0.943 5 N -0.658 5.658 6 C 0.045 3.955 7 C -0.105 4.105 8 C -0.109 4.109 9 H 0.086 0.914 10 C 0.524 3.476 11 O -0.580 6.580 12 N -0.595 5.595 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.048 0.952 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.951 3.049 19 H -0.274 1.274 20 H -0.279 1.279 21 H -0.273 1.273 22 C 0.135 3.865 23 C -0.152 4.152 24 C -0.150 4.150 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.347 0.653 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 5.932 -1.707 10.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.022 4.022 4 H 0.075 0.925 5 N -0.288 5.288 6 C -0.084 4.084 7 C -0.144 4.144 8 C -0.131 4.131 9 H 0.104 0.896 10 C 0.313 3.687 11 O -0.463 6.463 12 N -0.324 5.324 13 C 0.130 3.870 14 C -0.582 4.582 15 H 0.066 0.934 16 C -0.177 4.177 17 N -0.556 5.556 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.204 1.204 21 H -0.198 1.198 22 C 0.031 3.969 23 C -0.210 4.210 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.962 5.617 -1.530 10.687 hybrid contribution 0.397 -0.617 -0.602 0.949 sum -8.565 5.000 -2.132 10.144 Atomic orbital electron populations 1.21671 0.93701 1.02240 1.02054 1.21418 0.97584 0.94679 1.00937 1.22255 0.91860 0.96280 0.91790 0.92509 1.63653 1.07230 1.24661 1.33260 1.22886 0.91034 0.92507 1.01993 1.22166 0.98357 0.95527 0.98347 1.21986 0.97102 1.01429 0.92620 0.89562 1.20514 0.81727 0.75995 0.90430 1.90490 1.54849 1.50383 1.50561 1.48309 1.08783 1.62571 1.12783 1.19143 0.87876 0.92999 0.87024 1.21648 1.25472 0.92616 1.18454 0.93384 1.25591 0.94765 1.02611 0.94706 1.69999 1.27301 1.37296 1.21030 0.85662 0.78471 0.80627 0.77606 1.19992 1.20446 1.19782 1.21096 0.98374 0.95631 0.81752 1.22063 1.01547 0.98635 0.98797 1.22056 1.02464 0.94237 1.02085 0.93000 0.92033 0.91240 0.93842 0.92017 0.83620 0.93419 0.88145 0.90831 0.92020 0.96546 0.94594 0.92350 0.90156 0.92108 0.90074 0.94608 0.93262 0.89681 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.79 71.98 0.70 -2.64 16 2 C -0.11 -3.39 5.55 30.60 0.17 -3.22 16 3 C 0.09 2.87 2.58 45.06 0.12 2.98 16 4 H 0.06 1.99 6.78 -2.39 -0.02 1.97 16 5 N -0.66 -17.81 6.97 -478.98 -3.34 -21.15 16 6 C 0.04 1.18 7.47 86.45 0.65 1.82 16 7 C -0.11 -3.50 5.47 31.49 0.17 -3.33 16 8 C -0.11 -4.16 2.03 -10.64 -0.02 -4.18 16 9 H 0.09 3.81 6.88 -2.39 -0.02 3.79 16 10 C 0.52 21.75 6.13 87.66 0.54 22.29 16 11 O -0.58 -24.87 11.82 -3.05 -0.04 -24.91 16 12 N -0.59 -25.22 2.41 -802.13 -1.93 -27.15 16 13 C 0.25 12.10 4.78 85.63 0.41 12.51 16 14 C -0.54 -28.72 9.11 25.60 0.23 -28.48 16 15 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 16 C 0.02 1.26 5.46 84.66 0.46 1.73 16 17 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16 18 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 19 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 C 0.13 4.99 3.28 44.99 0.15 5.14 16 23 C -0.15 -5.40 8.99 71.98 0.65 -4.75 16 24 C -0.15 -4.75 9.03 71.98 0.65 -4.10 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.47 7.50 -2.39 -0.02 1.45 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.35 7.61 8.45 -89.69 -0.76 6.86 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 34 H 0.06 2.07 7.70 -2.38 -0.02 2.05 16 35 H 0.02 0.84 7.92 -2.39 -0.02 0.82 16 36 H 0.04 1.79 5.48 -2.39 -0.01 1.77 16 37 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 38 H 0.08 2.98 7.80 -2.39 -0.02 2.97 16 39 H 0.06 2.30 6.24 -2.38 -0.01 2.29 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.06 1.95 6.51 -2.39 -0.02 1.94 16 Total: -1.00 -58.59 341.74 2.08 -56.51 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.21 Total: 26.82 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.87 Total: -4.23 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.98 Total: -98.73 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.04 Total: -24.91 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -58.59 2.08 -56.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690899746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.691 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds