Wall clock time and date at job start Mon Mar 30 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47227 * 2 1 4 4 H 1.08993 * 109.90476 * 54.39721 * 3 2 1 5 5 N 1.48319 * 110.06301 * 293.24019 * 3 2 1 6 6 C 1.48531 * 105.60793 * 215.24870 * 5 3 2 7 7 C 1.54933 * 103.37703 * 39.18727 * 6 5 3 8 8 C 1.53995 * 109.91343 * 175.49863 * 3 2 1 9 9 H 1.09003 * 110.30432 * 239.68754 * 8 3 2 10 10 C 1.50700 * 110.39330 * 1.81839 * 8 3 2 11 11 O 1.21280 * 120.00074 * 76.16353 * 10 8 3 12 12 N 1.34776 * 119.99332 * 256.16214 * 10 8 3 13 13 C 1.46493 * 120.00593 * 4.27733 * 12 10 8 14 14 C 1.50696 * 109.47264 * 87.10400 * 13 12 10 15 15 H 1.08005 * 120.00000 * 3.07433 * 14 13 12 16 16 C 1.37877 * 120.00593 * 183.08077 * 14 13 12 17 17 N 1.31514 * 120.00434 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99673 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47242 * 90.00030 * 18 16 14 20 20 H 1.48495 * 109.47102 * 210.00518 * 18 16 14 21 21 H 1.48504 * 109.46767 * 330.00050 * 18 16 14 22 22 C 1.46509 * 119.99316 * 184.27917 * 12 10 8 23 23 C 1.52998 * 109.47348 * 301.09506 * 22 12 10 24 24 C 1.52998 * 109.47249 * 61.09850 * 22 12 10 25 25 H 1.09000 * 109.46930 * 300.00155 * 1 2 3 26 26 H 1.09002 * 109.47213 * 59.99122 * 1 2 3 27 27 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46562 * 240.00241 * 2 1 3 29 29 H 1.08995 * 109.46902 * 120.00053 * 2 1 3 30 30 H 1.00907 * 111.19038 * 94.75979 * 5 3 2 31 31 H 1.09003 * 110.66386 * 280.67187 * 6 5 3 32 32 H 1.09003 * 110.66844 * 157.70662 * 6 5 3 33 33 H 1.08999 * 110.72784 * 80.86014 * 7 6 5 34 34 H 1.09005 * 110.72577 * 204.14739 * 7 6 5 35 35 H 1.09007 * 109.47534 * 207.10328 * 13 12 10 36 36 H 1.08997 * 109.47133 * 327.09959 * 13 12 10 37 37 H 0.97002 * 120.00195 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.46470 * 181.09439 * 22 12 10 39 39 H 1.09000 * 109.46849 * 66.56590 * 23 22 12 40 40 H 1.08996 * 109.47134 * 186.56513 * 23 22 12 41 41 H 1.09000 * 109.46744 * 306.56764 * 23 22 12 42 42 H 1.09007 * 109.47175 * 64.68911 * 24 22 12 43 43 H 1.08994 * 109.47529 * 184.69166 * 24 22 12 44 44 H 1.08996 * 109.47084 * 304.69305 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6013 1.9912 0.8333 5 7 1.6914 2.1055 -1.2801 6 6 2.8276 3.0131 -1.5826 7 6 4.0681 2.1892 -1.1552 8 6 3.5758 1.4559 0.1136 9 1 3.8842 1.9980 1.0076 10 6 4.1122 0.0479 0.1454 11 8 4.1693 -0.6025 -0.8766 12 7 4.5286 -0.4883 1.3097 13 6 4.3732 0.2615 2.5586 14 6 3.0097 -0.0088 3.1406 15 1 2.3460 -0.7109 2.6577 16 6 2.6093 0.6400 4.2893 17 7 1.4191 0.4045 4.7969 18 14 3.7574 1.8539 5.1248 19 1 3.5267 3.2133 4.5736 20 1 3.4924 1.8606 6.5859 21 1 5.1659 1.4524 4.8791 22 6 5.1366 -1.8211 1.3263 23 6 4.1466 -2.8405 0.7591 24 6 6.4060 -1.8133 0.4722 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8278 2.6213 -1.2004 31 1 2.7541 3.9296 -0.9971 32 1 2.8652 3.2406 -2.6479 33 1 4.3428 1.4749 -1.9314 34 1 4.9055 2.8463 -0.9204 35 1 5.1395 -0.0513 3.2680 36 1 4.4777 1.3277 2.3577 37 1 1.1376 0.8607 5.6053 38 1 5.3900 -2.0921 2.3512 39 1 3.9829 -2.6378 -0.2993 40 1 4.5515 -3.8454 0.8783 41 1 3.2001 -2.7642 1.2943 42 1 7.1433 -1.1491 0.9232 43 1 6.8126 -2.8230 0.4162 44 1 6.1664 -1.4620 -0.5314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690900388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:14 Heat of formation + Delta-G solvation = -38.061499 kcal Electronic energy + Delta-G solvation = -22955.696340 eV Core-core repulsion = 19907.749374 eV Total energy + Delta-G solvation = -3047.946967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.11482 -37.60401 -35.28945 -33.20092 -32.59138 -31.82461 -29.78996 -27.71132 -27.35254 -26.64760 -23.17222 -22.69906 -21.91225 -20.51809 -19.88290 -17.45661 -17.07179 -16.68745 -16.06102 -15.27915 -14.61720 -14.48029 -14.15753 -13.93603 -13.34477 -12.87887 -12.75223 -12.62996 -12.57814 -12.30886 -12.07577 -11.86793 -11.79711 -11.70420 -11.38525 -11.25353 -10.92724 -10.86232 -10.73436 -10.60544 -10.45013 -10.28350 -10.25446 -10.09770 -9.95110 -9.42023 -8.77185 -8.64755 -8.15777 -7.66678 -6.21721 -4.22355 3.13733 3.22704 3.24524 3.39227 3.84667 4.24666 4.53935 4.96496 5.07969 5.14905 5.24183 5.45932 5.52607 5.64991 5.67779 5.78307 5.83865 5.93117 5.96349 6.02335 6.07378 6.08172 6.18274 6.24990 6.30442 6.35553 6.44826 6.46178 6.54514 6.56411 6.66716 6.71715 6.75706 6.88018 6.92340 7.13233 7.21837 7.43313 7.49473 7.67151 8.19151 8.44230 8.86012 9.04433 9.38016 10.90242 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.009719 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.502476 B = 2880.218596 C = 3665.090186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.101 3.899 4 H 0.059 0.941 5 N -0.665 5.665 6 C 0.041 3.959 7 C -0.112 4.112 8 C -0.118 4.118 9 H 0.096 0.904 10 C 0.540 3.460 11 O -0.556 6.556 12 N -0.591 5.591 13 C 0.206 3.794 14 C -0.535 4.535 15 H 0.085 0.915 16 C 0.078 3.922 17 N -0.888 5.888 18 Si 0.866 3.134 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.149 3.851 23 C -0.164 4.164 24 C -0.165 4.165 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.333 0.667 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.660 2.596 -7.653 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.008 4.008 4 H 0.077 0.923 5 N -0.295 5.295 6 C -0.089 4.089 7 C -0.150 4.150 8 C -0.139 4.139 9 H 0.114 0.886 10 C 0.329 3.671 11 O -0.437 6.437 12 N -0.322 5.322 13 C 0.085 3.915 14 C -0.573 4.573 15 H 0.103 0.897 16 C -0.126 4.126 17 N -0.526 5.526 18 Si 0.692 3.308 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.190 1.190 22 C 0.045 3.955 23 C -0.222 4.222 24 C -0.223 4.223 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.760 1.740 -8.434 9.840 hybrid contribution 0.282 1.546 1.643 2.273 sum 5.042 3.286 -6.791 9.074 Atomic orbital electron populations 1.21657 0.96646 1.00825 1.00807 1.21821 0.95502 0.95056 1.03505 1.21951 0.91998 0.96851 0.90026 0.92324 1.63149 1.04199 1.29652 1.32457 1.22950 0.91406 0.94033 1.00494 1.22494 0.96789 0.98582 0.97162 1.22241 0.96739 0.95084 0.99883 0.88643 1.19906 0.76254 0.88091 0.82853 1.90530 1.56598 1.62674 1.33851 1.48058 1.59096 1.17034 1.07971 1.19870 0.98329 0.91519 0.81772 1.21409 0.99168 1.26746 1.09972 0.89732 1.24848 0.94796 0.96321 0.96617 1.69885 1.18562 1.42509 1.21648 0.87018 0.82007 0.82206 0.79541 1.20059 1.20945 1.18977 1.20833 0.92281 0.82946 0.99427 1.22179 0.99566 0.97077 1.03391 1.22184 0.96990 1.01155 1.01986 0.93076 0.93331 0.93638 0.91033 0.89435 0.85239 0.94534 0.90470 0.89410 0.91561 0.95089 0.95477 0.92477 0.90091 0.90537 0.93244 0.92238 0.93398 0.92499 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.82 37.16 0.36 -2.16 16 2 C -0.12 -2.39 4.45 -26.73 -0.12 -2.50 16 3 C 0.10 1.85 3.27 -66.41 -0.22 1.63 16 4 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 5 N -0.67 -10.41 6.75 -102.84 -0.69 -11.10 16 6 C 0.04 0.56 7.54 -1.90 -0.01 0.55 16 7 C -0.11 -1.73 6.56 -24.87 -0.16 -1.90 16 8 C -0.12 -2.15 2.94 -90.41 -0.27 -2.41 16 9 H 0.10 1.78 5.61 -51.93 -0.29 1.49 16 10 C 0.54 10.68 3.92 -10.99 -0.04 10.64 16 11 O -0.56 -11.68 10.97 5.56 0.06 -11.62 16 12 N -0.59 -11.76 2.36 -167.47 -0.40 -12.15 16 13 C 0.21 4.45 4.02 -5.20 -0.02 4.43 16 14 C -0.53 -13.42 9.39 -34.44 -0.32 -13.75 16 15 H 0.08 2.36 6.25 -52.48 -0.33 2.03 16 16 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.89 -25.02 13.96 55.43 0.77 -24.25 16 18 Si 0.87 19.43 27.41 -169.99 -4.66 14.77 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -5.67 6.63 56.52 0.37 -5.29 16 22 C 0.15 2.67 3.27 -67.93 -0.22 2.45 16 23 C -0.16 -2.91 8.98 37.16 0.33 -2.58 16 24 C -0.17 -2.59 9.20 37.16 0.34 -2.25 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.77 7.84 -51.93 -0.41 0.37 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 29 H 0.09 1.98 4.80 -51.93 -0.25 1.73 16 30 H 0.33 4.59 8.93 -39.29 -0.35 4.24 16 31 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.49 7.09 -51.93 -0.37 1.12 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.67 7.14 -51.92 -0.37 0.30 16 36 H 0.03 0.58 5.02 -51.93 -0.26 0.32 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 39 H 0.08 1.46 6.19 -51.93 -0.32 1.14 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.26 6.29 -51.93 -0.33 0.94 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -27.64 330.51 -7.80 -35.44 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -7.42 Total: 9.87 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.45 Total: -5.93 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.32 Total: -47.51 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.62 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.66 Total: 14.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.64 -7.80 -35.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690900388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.623 kcal (2) G-P(sol) polarization free energy of solvation -27.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds