Wall clock time and date at job start Mon Mar 30 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47227 * 2 1 4 4 H 1.08993 * 109.90476 * 54.39721 * 3 2 1 5 5 N 1.48319 * 110.06301 * 293.24019 * 3 2 1 6 6 C 1.48531 * 105.60793 * 215.24870 * 5 3 2 7 7 C 1.54933 * 103.37703 * 39.18727 * 6 5 3 8 8 C 1.53995 * 109.91343 * 175.49863 * 3 2 1 9 9 H 1.09003 * 110.30432 * 239.68754 * 8 3 2 10 10 C 1.50700 * 110.39330 * 1.81839 * 8 3 2 11 11 O 1.21280 * 120.00074 * 76.16353 * 10 8 3 12 12 N 1.34776 * 119.99332 * 256.16214 * 10 8 3 13 13 C 1.46493 * 120.00593 * 4.27733 * 12 10 8 14 14 C 1.50696 * 109.47264 * 87.10400 * 13 12 10 15 15 H 1.08005 * 120.00000 * 3.07433 * 14 13 12 16 16 C 1.37877 * 120.00593 * 183.08077 * 14 13 12 17 17 N 1.31514 * 120.00434 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99673 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47242 * 90.00030 * 18 16 14 20 20 H 1.48495 * 109.47102 * 210.00518 * 18 16 14 21 21 H 1.48504 * 109.46767 * 330.00050 * 18 16 14 22 22 C 1.46509 * 119.99316 * 184.27917 * 12 10 8 23 23 C 1.52998 * 109.47348 * 301.09506 * 22 12 10 24 24 C 1.52998 * 109.47249 * 61.09850 * 22 12 10 25 25 H 1.09000 * 109.46930 * 300.00155 * 1 2 3 26 26 H 1.09002 * 109.47213 * 59.99122 * 1 2 3 27 27 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46562 * 240.00241 * 2 1 3 29 29 H 1.08995 * 109.46902 * 120.00053 * 2 1 3 30 30 H 1.00907 * 111.19038 * 94.75979 * 5 3 2 31 31 H 1.09003 * 110.66386 * 280.67187 * 6 5 3 32 32 H 1.09003 * 110.66844 * 157.70662 * 6 5 3 33 33 H 1.08999 * 110.72784 * 80.86014 * 7 6 5 34 34 H 1.09005 * 110.72577 * 204.14739 * 7 6 5 35 35 H 1.09007 * 109.47534 * 207.10328 * 13 12 10 36 36 H 1.08997 * 109.47133 * 327.09959 * 13 12 10 37 37 H 0.97002 * 120.00195 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.46470 * 181.09439 * 22 12 10 39 39 H 1.09000 * 109.46849 * 66.56590 * 23 22 12 40 40 H 1.08996 * 109.47134 * 186.56513 * 23 22 12 41 41 H 1.09000 * 109.46744 * 306.56764 * 23 22 12 42 42 H 1.09007 * 109.47175 * 64.68911 * 24 22 12 43 43 H 1.08994 * 109.47529 * 184.69166 * 24 22 12 44 44 H 1.08996 * 109.47084 * 304.69305 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6013 1.9912 0.8333 5 7 1.6914 2.1055 -1.2801 6 6 2.8276 3.0131 -1.5826 7 6 4.0681 2.1892 -1.1552 8 6 3.5758 1.4559 0.1136 9 1 3.8842 1.9980 1.0076 10 6 4.1122 0.0479 0.1454 11 8 4.1693 -0.6025 -0.8766 12 7 4.5286 -0.4883 1.3097 13 6 4.3732 0.2615 2.5586 14 6 3.0097 -0.0088 3.1406 15 1 2.3460 -0.7109 2.6577 16 6 2.6093 0.6400 4.2893 17 7 1.4191 0.4045 4.7969 18 14 3.7574 1.8539 5.1248 19 1 3.5267 3.2133 4.5736 20 1 3.4924 1.8606 6.5859 21 1 5.1659 1.4524 4.8791 22 6 5.1366 -1.8211 1.3263 23 6 4.1466 -2.8405 0.7591 24 6 6.4060 -1.8133 0.4722 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.8278 2.6213 -1.2004 31 1 2.7541 3.9296 -0.9971 32 1 2.8652 3.2406 -2.6479 33 1 4.3428 1.4749 -1.9314 34 1 4.9055 2.8463 -0.9204 35 1 5.1395 -0.0513 3.2680 36 1 4.4777 1.3277 2.3577 37 1 1.1376 0.8607 5.6053 38 1 5.3900 -2.0921 2.3512 39 1 3.9829 -2.6378 -0.2993 40 1 4.5515 -3.8454 0.8783 41 1 3.2001 -2.7642 1.2943 42 1 7.1433 -1.1491 0.9232 43 1 6.8126 -2.8230 0.4162 44 1 6.1664 -1.4620 -0.5314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690900388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:14 Heat of formation + Delta-G solvation = -55.551380 kcal Electronic energy + Delta-G solvation = -22956.454759 eV Core-core repulsion = 19907.749374 eV Total energy + Delta-G solvation = -3048.705385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.62286 -39.00035 -36.89741 -34.96515 -34.06790 -33.52156 -31.17634 -29.41156 -28.82961 -28.01659 -24.72835 -24.35821 -23.44033 -21.82598 -21.36887 -19.05438 -18.99983 -18.08370 -17.61656 -16.77315 -16.29040 -15.86144 -15.70162 -15.54024 -14.77623 -14.52139 -14.34063 -14.13401 -14.05983 -13.92065 -13.45280 -13.35192 -13.31368 -13.05778 -12.78833 -12.68783 -12.57059 -12.40117 -12.23665 -12.04674 -11.98953 -11.89763 -11.81175 -11.69599 -11.39922 -11.27322 -10.73455 -10.22867 -9.43808 -9.30038 -8.23093 -6.28015 1.37846 1.41298 1.49077 1.83740 2.33351 2.36384 3.09903 3.27705 3.57953 3.78937 3.85213 4.08725 4.19457 4.27532 4.30410 4.38591 4.41604 4.52236 4.54395 4.61853 4.69574 4.77141 4.79729 4.91284 4.93811 4.94759 4.96439 5.00930 5.03932 5.06880 5.21117 5.24166 5.33835 5.36090 5.42030 5.48379 5.51787 5.86869 5.92854 6.29183 6.48874 6.71689 6.82800 7.33964 7.49719 8.92074 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.009719 C = 0.007638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.502476 B = 2880.218596 C = 3665.090186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C 0.107 3.893 4 H 0.041 0.959 5 N -0.669 5.669 6 C 0.044 3.956 7 C -0.107 4.107 8 C -0.124 4.124 9 H 0.092 0.908 10 C 0.539 3.461 11 O -0.571 6.571 12 N -0.596 5.596 13 C 0.213 3.787 14 C -0.525 4.525 15 H 0.043 0.957 16 C 0.023 3.977 17 N -0.939 5.939 18 Si 0.929 3.071 19 H -0.265 1.265 20 H -0.289 1.289 21 H -0.242 1.242 22 C 0.137 3.863 23 C -0.154 4.154 24 C -0.152 4.152 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.344 0.656 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 4.093 -8.392 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.004 4.004 4 H 0.059 0.941 5 N -0.300 5.300 6 C -0.084 4.084 7 C -0.145 4.145 8 C -0.146 4.146 9 H 0.110 0.890 10 C 0.328 3.672 11 O -0.452 6.452 12 N -0.326 5.326 13 C 0.091 3.909 14 C -0.563 4.563 15 H 0.061 0.939 16 C -0.176 4.176 17 N -0.579 5.579 18 Si 0.752 3.248 19 H -0.190 1.190 20 H -0.215 1.215 21 H -0.165 1.165 22 C 0.034 3.966 23 C -0.212 4.212 24 C -0.210 4.210 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.729 3.234 -9.201 11.849 hybrid contribution -0.389 0.975 1.814 2.096 sum 6.340 4.209 -7.387 10.606 Atomic orbital electron populations 1.21588 0.95379 1.01035 1.01167 1.21638 0.96608 0.95896 1.00901 1.21758 0.92098 0.95680 0.90823 0.94070 1.63095 1.05605 1.30823 1.30429 1.23048 0.89464 0.93826 1.02112 1.22506 0.98422 0.98509 0.95060 1.22317 0.96637 0.94353 1.01305 0.89028 1.20177 0.75786 0.88677 0.82533 1.90520 1.57111 1.63280 1.34279 1.48114 1.59352 1.17724 1.07457 1.19711 0.96194 0.92514 0.82509 1.21506 1.00160 1.25166 1.09504 0.93877 1.25647 0.96194 0.98349 0.97392 1.70047 1.20934 1.44435 1.22461 0.85997 0.80949 0.79995 0.77826 1.19013 1.21546 1.16484 1.21089 0.93203 0.82001 1.00283 1.22070 0.98435 0.98930 1.01759 1.22060 0.95778 1.02942 1.00228 0.94358 0.91089 0.93594 0.92555 0.92882 0.83921 0.92718 0.88289 0.90976 0.89080 0.94044 0.94131 0.92634 0.89652 0.92062 0.90333 0.95275 0.92334 0.89977 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 9.82 71.98 0.71 -4.19 16 2 C -0.11 -4.58 4.45 30.60 0.14 -4.45 16 3 C 0.11 3.89 3.27 44.98 0.15 4.04 16 4 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 5 N -0.67 -19.86 6.75 -479.27 -3.23 -23.10 16 6 C 0.04 1.09 7.54 86.65 0.65 1.74 16 7 C -0.11 -3.07 6.56 31.80 0.21 -2.86 16 8 C -0.12 -4.43 2.94 -10.66 -0.03 -4.47 16 9 H 0.09 3.30 5.61 -2.39 -0.01 3.29 16 10 C 0.54 21.27 3.92 87.66 0.34 21.62 16 11 O -0.57 -24.10 10.97 -3.03 -0.03 -24.14 16 12 N -0.60 -23.60 2.36 -802.15 -1.89 -25.49 16 13 C 0.21 9.00 4.02 85.63 0.34 9.34 16 14 C -0.52 -26.94 9.39 25.60 0.24 -26.70 16 15 H 0.04 2.55 6.25 -2.91 -0.02 2.53 16 16 C 0.02 1.21 5.47 84.65 0.46 1.67 16 17 N -0.94 -54.57 13.96 21.45 0.30 -54.27 16 18 Si 0.93 39.36 27.41 68.60 1.88 41.24 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 20 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.24 -9.25 6.63 99.48 0.66 -8.59 16 22 C 0.14 4.82 3.27 44.99 0.15 4.97 16 23 C -0.15 -5.53 8.98 71.98 0.65 -4.88 16 24 C -0.15 -4.47 9.20 71.98 0.66 -3.80 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.23 7.84 -2.39 -0.02 2.22 16 27 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.44 6.76 -2.39 -0.02 2.42 16 29 H 0.05 2.54 4.80 -2.39 -0.01 2.53 16 30 H 0.34 8.84 8.93 -89.69 -0.80 8.04 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.33 7.09 -2.39 -0.02 2.31 16 34 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.04 1.69 7.14 -2.38 -0.02 1.67 16 36 H 0.04 1.64 5.02 -2.39 -0.01 1.63 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.09 2.90 7.76 -2.39 -0.02 2.89 16 39 H 0.06 2.38 6.19 -2.39 -0.01 2.36 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.82 6.29 -2.39 -0.02 1.81 16 Total: -1.00 -61.56 330.51 1.82 -59.74 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.14 Total: 33.98 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.67 Total: -7.96 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -4.83 Total: -102.86 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.03 Total: -24.14 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.88 Total: 41.24 kcal Total: -61.56 1.82 -59.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690900388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.186 kcal (2) G-P(sol) polarization free energy of solvation -61.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds