Wall clock time and date at job start Mon Mar 30 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.46877 * 2 1 4 4 C 1.52997 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.08998 * 110.89042 * 57.42723 * 4 3 2 6 6 C 1.55156 * 111.00262 * 293.54692 * 4 3 2 7 7 C 1.54326 * 102.94145 * 206.38731 * 6 4 3 8 8 N 1.47023 * 107.27191 * 22.19444 * 7 6 4 9 9 C 1.34772 * 125.64997 * 181.02938 * 8 7 6 10 10 O 1.21276 * 120.00250 * 180.02562 * 9 8 7 11 11 C 1.50707 * 119.99926 * 0.02562 * 9 8 7 12 12 H 1.08990 * 109.46905 * 40.00676 * 11 9 8 13 13 N 1.46898 * 109.47045 * 160.00562 * 11 9 8 14 14 C 1.52996 * 109.47058 * 280.00535 * 11 9 8 15 15 C 1.52998 * 109.46929 * 175.00132 * 14 11 9 16 16 C 1.50706 * 109.47348 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72505 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.47426 * 108.70308 * 1.28634 * 8 7 6 25 25 H 1.08998 * 109.46694 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46863 * 300.00056 * 1 2 3 27 27 H 1.08997 * 109.47163 * 59.99913 * 1 2 3 28 28 H 1.08994 * 109.47239 * 240.00314 * 2 1 3 29 29 H 1.08999 * 109.47323 * 119.99320 * 2 1 3 30 30 H 1.09003 * 109.46897 * 60.00314 * 3 2 1 31 31 H 1.08997 * 109.47295 * 300.00006 * 3 2 1 32 32 H 1.08996 * 110.72281 * 88.02728 * 6 4 3 33 33 H 1.09001 * 110.72269 * 324.74620 * 6 4 3 34 34 H 1.09003 * 109.88369 * 262.77472 * 7 6 4 35 35 H 1.09007 * 109.88635 * 141.60903 * 7 6 4 36 36 H 1.00906 * 111.00186 * 59.99876 * 13 11 9 37 37 H 1.00895 * 111.00368 * 183.95173 * 13 11 9 38 38 H 1.09000 * 109.47441 * 55.00222 * 14 11 9 39 39 H 1.09002 * 109.47087 * 294.99668 * 14 11 9 40 40 H 1.09001 * 109.47671 * 60.00109 * 15 14 11 41 41 H 1.08998 * 109.47454 * 300.00107 * 15 14 11 42 42 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 43 43 H 1.08991 * 110.36613 * 94.48150 * 24 8 7 44 44 H 1.09000 * 110.36969 * 216.81235 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9583 0.8945 -0.8590 6 6 4.1267 0.8638 1.3269 7 6 5.5084 1.5406 1.4466 8 7 5.4682 2.7624 0.6298 9 6 6.4891 3.6249 0.4558 10 8 6.3423 4.6052 -0.2429 11 6 7.8130 3.3712 1.1297 12 1 8.0446 2.3071 1.0864 13 7 8.8660 4.1299 0.4416 14 6 7.7352 3.8173 2.5911 15 6 9.0352 3.4464 3.3074 16 6 8.9589 3.8863 4.7468 17 1 8.0720 4.3813 5.1138 18 6 10.0192 3.6522 5.5964 19 7 11.0971 3.0445 5.1508 20 14 9.9243 4.1968 7.3808 21 1 9.3464 3.1030 8.2021 22 1 11.2878 4.5184 7.8733 23 1 9.0632 5.4022 7.4852 24 6 4.1243 2.8911 0.0374 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 4.2321 -0.2191 1.2613 33 1 3.4880 1.1400 2.1659 34 1 6.2830 0.8706 1.0735 35 1 5.7069 1.7969 2.4873 36 1 8.6741 5.1202 0.4678 37 1 9.7731 3.9269 0.8339 38 1 6.8969 3.3197 3.0788 39 1 7.5919 4.8970 2.6343 40 1 9.8736 3.9440 2.8199 41 1 9.1787 2.3667 3.2642 42 1 11.8430 2.8795 5.7486 43 1 3.4940 3.5247 0.6611 44 1 4.1918 3.2975 -0.9717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691595166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:09 Heat of formation + Delta-G solvation = -89.358428 kcal Electronic energy + Delta-G solvation = -20797.990587 eV Core-core repulsion = 17747.819219 eV Total energy + Delta-G solvation = -3050.171368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30531 -39.07209 -37.08895 -35.83029 -34.85565 -32.39199 -31.71900 -30.37538 -28.58816 -27.05500 -25.41280 -23.87163 -22.61418 -22.01910 -21.12282 -20.12202 -18.85468 -18.22042 -17.42059 -16.64693 -16.43893 -16.15048 -15.76855 -15.45660 -15.29186 -14.78511 -14.52476 -14.45026 -14.23732 -14.10191 -13.80271 -13.44686 -13.37392 -12.98893 -12.85075 -12.73348 -12.68005 -12.53033 -12.21794 -11.87499 -11.76579 -11.67301 -11.53288 -11.47607 -11.32056 -11.26010 -10.77003 -10.56940 -9.76062 -9.63105 -8.22304 -6.33014 1.39157 1.40147 1.50549 1.54359 1.92175 2.39390 3.11234 3.34159 3.64296 3.69270 3.73820 3.85626 4.05120 4.19885 4.25327 4.28795 4.36130 4.38284 4.49752 4.59885 4.64440 4.74984 4.77503 4.85382 4.93260 4.98051 5.03520 5.06575 5.09221 5.12419 5.27749 5.32430 5.41707 5.44574 5.50013 5.56147 5.62627 5.78654 6.02537 6.19575 6.43067 6.44638 6.81787 7.09929 7.36199 8.88559 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.003775 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.637843 B = 7415.052953 C = 8292.919174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.088 4.088 5 H 0.088 0.912 6 C -0.116 4.116 7 C 0.086 3.914 8 N -0.619 5.619 9 C 0.536 3.464 10 O -0.577 6.577 11 C 0.086 3.914 12 H 0.105 0.895 13 N -0.830 5.830 14 C -0.118 4.118 15 C 0.033 3.967 16 C -0.546 4.546 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.269 1.269 24 C 0.103 3.897 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.344 0.656 37 H 0.354 0.646 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.067 0.933 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.735 -8.190 -8.714 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.107 4.107 5 H 0.107 0.893 6 C -0.154 4.154 7 C -0.036 4.036 8 N -0.352 5.352 9 C 0.325 3.675 10 O -0.456 6.456 11 C -0.029 4.029 12 H 0.122 0.878 13 N -0.362 5.362 14 C -0.158 4.158 15 C -0.004 4.004 16 C -0.583 4.583 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.792 -8.091 -9.701 22.643 hybrid contribution 0.682 0.908 1.867 2.186 sum -18.110 -7.183 -7.834 20.998 Atomic orbital electron populations 1.21784 0.95704 1.01859 1.01806 1.21506 0.95912 0.95951 1.02558 1.21511 0.92043 0.97935 1.02653 1.22395 0.96539 0.93112 0.98690 0.89344 1.22739 0.93391 1.01430 0.97822 1.22384 1.00551 0.85368 0.95306 1.48524 1.12146 1.24940 1.49599 1.20479 0.85364 0.81577 0.80049 1.90606 1.83694 1.30022 1.41285 1.21346 0.89447 1.00414 0.91705 0.87755 1.58756 1.04738 1.12701 1.59988 1.22107 1.00303 0.99844 0.93567 1.18941 0.91939 0.95485 0.94051 1.21593 1.01638 1.38584 0.96533 0.92795 1.25864 0.94999 0.95096 1.03275 1.70062 1.06307 1.42893 1.37352 0.85526 0.77477 0.78907 0.79629 1.19532 1.20769 1.19305 1.22469 0.82234 0.98877 0.98306 0.92400 0.92789 0.92807 0.91788 0.91301 0.91452 0.91473 0.87729 0.89624 0.90520 0.91403 0.84315 0.83132 0.91773 0.93939 0.97980 0.97895 0.92672 0.91447 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 2 C -0.12 -1.25 5.78 30.60 0.18 -1.07 16 3 C -0.10 -1.25 4.73 30.60 0.14 -1.11 16 4 C -0.09 -1.36 3.08 -9.32 -0.03 -1.39 16 5 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 6 C -0.12 -1.73 5.59 31.78 0.18 -1.55 16 7 C 0.09 1.91 6.19 86.73 0.54 2.45 16 8 N -0.62 -17.49 3.32 -811.34 -2.70 -20.19 16 9 C 0.54 19.30 7.10 87.66 0.62 19.92 16 10 O -0.58 -24.43 16.50 -3.02 -0.05 -24.48 16 11 C 0.09 3.11 2.62 44.17 0.12 3.22 16 12 H 0.10 3.56 7.46 -2.39 -0.02 3.54 16 13 N -0.83 -30.41 8.94 -171.81 -1.54 -31.95 16 14 C -0.12 -4.82 4.77 30.59 0.15 -4.68 16 15 C 0.03 1.64 4.74 29.85 0.14 1.78 16 16 C -0.55 -30.18 9.11 25.60 0.23 -29.94 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.35 5.46 84.65 0.46 0.81 16 19 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 20 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.10 2.38 6.38 86.93 0.55 2.93 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.67 7.51 -2.39 -0.02 0.65 16 30 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.15 8.13 -2.39 -0.02 1.13 16 33 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 34 H 0.08 1.62 7.85 -2.39 -0.02 1.60 16 35 H 0.07 1.66 6.75 -2.38 -0.02 1.64 16 36 H 0.34 12.82 8.58 -89.69 -0.77 12.05 16 37 H 0.35 12.89 7.55 -89.70 -0.68 12.22 16 38 H 0.06 2.49 6.66 -2.39 -0.02 2.47 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 41 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 44 H 0.06 1.61 8.03 -2.39 -0.02 1.59 16 Total: -1.00 -66.79 349.12 1.55 -65.23 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.47 Total: 29.50 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.00 Total: -9.42 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -3.95 Total: -106.22 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.79 1.55 -65.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691595166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.123 kcal (2) G-P(sol) polarization free energy of solvation -66.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds