Wall clock time and date at job start Mon Mar 30 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47126 * 2 1 4 4 C 1.53001 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.88909 * 54.29846 * 4 3 2 6 6 C 1.55157 * 111.03508 * 290.39450 * 4 3 2 7 7 C 1.54332 * 102.94104 * 206.41168 * 6 4 3 8 8 N 1.47019 * 107.26809 * 22.19421 * 7 6 4 9 9 C 1.34786 * 125.64350 * 181.02963 * 8 7 6 10 10 O 1.21280 * 119.99625 * 180.02562 * 9 8 7 11 11 C 1.50700 * 119.99814 * 0.03053 * 9 8 7 12 12 H 1.08994 * 109.47606 * 320.00318 * 11 9 8 13 13 N 1.46905 * 109.46614 * 200.00223 * 11 9 8 14 14 C 1.53002 * 109.46712 * 80.00740 * 11 9 8 15 15 C 1.52997 * 109.47003 * 184.99619 * 14 11 9 16 16 C 1.50696 * 109.47259 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00070 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00012 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00172 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99792 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47569 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47028 * 120.00186 * 20 18 16 23 23 H 1.48508 * 109.47165 * 240.00048 * 20 18 16 24 24 C 1.47418 * 108.70625 * 1.05636 * 8 7 6 25 25 H 1.09007 * 109.47363 * 300.00430 * 1 2 3 26 26 H 1.09000 * 109.47153 * 59.99518 * 1 2 3 27 27 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46907 * 239.99927 * 2 1 3 29 29 H 1.08998 * 109.47295 * 119.99718 * 2 1 3 30 30 H 1.08998 * 109.47287 * 60.00159 * 3 2 1 31 31 H 1.09002 * 109.47227 * 299.99811 * 3 2 1 32 32 H 1.09000 * 110.71794 * 324.77408 * 6 4 3 33 33 H 1.08996 * 110.72326 * 88.04394 * 6 4 3 34 34 H 1.08993 * 109.88239 * 262.77257 * 7 6 4 35 35 H 1.09003 * 110.01003 * 141.68082 * 7 6 4 36 36 H 1.00898 * 110.99992 * 300.00185 * 13 11 9 37 37 H 1.00898 * 110.99699 * 63.96001 * 13 11 9 38 38 H 1.08998 * 109.47160 * 304.99517 * 14 11 9 39 39 H 1.09004 * 109.47289 * 64.99675 * 14 11 9 40 40 H 1.08998 * 109.47080 * 299.99948 * 15 14 11 41 41 H 1.08997 * 109.47249 * 59.99558 * 15 14 11 42 42 H 0.96996 * 120.00425 * 179.97438 * 19 18 16 43 43 H 1.09003 * 110.36673 * 217.03608 * 24 8 7 44 44 H 1.09000 * 110.46196 * 94.76525 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9583 0.8483 -0.8279 6 6 4.1275 0.9376 1.3564 7 6 5.5089 1.6208 1.4383 8 7 5.4677 2.7958 0.5557 9 6 6.4881 3.6481 0.3343 10 8 6.3405 4.5886 -0.4171 11 6 7.8124 3.4323 1.0205 12 1 7.6413 3.1134 2.0486 13 7 8.5755 4.6876 1.0177 14 6 8.6023 2.3537 0.2765 15 6 9.8907 2.0457 1.0422 16 6 10.6691 0.9838 0.3092 17 1 10.2832 0.5695 -0.6106 18 6 11.8738 0.5409 0.8128 19 7 12.3434 1.0450 1.9331 20 14 12.8383 -0.7759 -0.0955 21 1 12.0991 -1.1751 -1.3199 22 1 14.1706 -0.2408 -0.4746 23 1 13.0124 -1.9585 0.7858 24 6 4.1253 2.8879 -0.0466 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.4889 1.2591 2.1792 33 1 4.2334 -0.1472 1.3503 34 1 6.2837 0.9317 1.1022 35 1 5.7103 1.9336 2.4628 36 1 8.7472 5.0044 0.0753 37 1 8.1048 5.3980 1.5579 38 1 7.9994 1.4488 0.2011 39 1 8.8502 2.7095 -0.7235 40 1 10.4936 2.9506 1.1176 41 1 9.6428 1.6900 2.0422 42 1 13.1908 0.7332 2.2875 43 1 4.1950 3.2349 -1.0775 44 1 3.4914 3.5565 0.5359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691595193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:18 Heat of formation + Delta-G solvation = -89.861971 kcal Electronic energy + Delta-G solvation = -20819.982830 eV Core-core repulsion = 17769.789626 eV Total energy + Delta-G solvation = -3050.193204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.38309 -39.13501 -36.83751 -35.86102 -34.82737 -32.43130 -31.94650 -30.39218 -28.52470 -27.08987 -25.25765 -23.84279 -22.57393 -21.97991 -21.16513 -20.22614 -18.61686 -18.19106 -17.41339 -16.90979 -16.69601 -16.34431 -15.98723 -15.30504 -15.21014 -14.65924 -14.57373 -14.33871 -14.18822 -14.04649 -13.66331 -13.50526 -13.38896 -12.94280 -12.85598 -12.73275 -12.51722 -12.28006 -12.21587 -11.78932 -11.74324 -11.69929 -11.51715 -11.50698 -11.28273 -11.26076 -11.00810 -10.50051 -9.72686 -9.67813 -8.14236 -6.24675 1.40981 1.42133 1.44130 1.55098 1.94915 2.44425 3.18731 3.32900 3.53928 3.63909 3.75553 3.82288 4.04678 4.23925 4.26103 4.27530 4.34078 4.36136 4.48366 4.60719 4.70961 4.74247 4.79805 4.91207 4.91942 4.96114 5.02092 5.07802 5.10478 5.21471 5.26082 5.30543 5.40563 5.47385 5.54474 5.56278 5.82260 5.97070 6.05003 6.29411 6.38994 6.47110 6.93429 6.99688 7.43483 8.97257 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.003931 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.498934 B = 7120.824230 C = 8130.992640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.101 4.101 4 C -0.093 4.093 5 H 0.079 0.921 6 C -0.115 4.115 7 C 0.085 3.915 8 N -0.615 5.615 9 C 0.498 3.502 10 O -0.587 6.587 11 C 0.090 3.910 12 H 0.106 0.894 13 N -0.817 5.817 14 C -0.079 4.079 15 C 0.042 3.958 16 C -0.543 4.543 17 H 0.054 0.946 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.281 1.281 23 H -0.276 1.276 24 C 0.102 3.898 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.345 0.655 37 H 0.346 0.654 38 H 0.064 0.936 39 H 0.039 0.961 40 H 0.005 0.995 41 H -0.005 1.005 42 H 0.262 0.738 43 H 0.057 0.943 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.656 -1.855 -0.559 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.112 4.112 5 H 0.098 0.902 6 C -0.153 4.153 7 C -0.037 4.037 8 N -0.347 5.347 9 C 0.286 3.714 10 O -0.468 6.468 11 C -0.025 4.025 12 H 0.124 0.876 13 N -0.346 5.346 14 C -0.117 4.117 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.073 0.927 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.188 1.188 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.020 4.020 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.013 0.987 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.941 -1.738 -0.473 23.012 hybrid contribution 0.123 0.064 -0.848 0.859 sum -22.818 -1.674 -1.321 22.917 Atomic orbital electron populations 1.21775 0.95510 1.01862 1.01903 1.21513 0.96061 0.96086 1.02418 1.21495 0.91781 0.97819 1.02789 1.22376 0.96751 0.93593 0.98477 0.90230 1.22735 0.93448 1.01504 0.97589 1.22402 1.00351 0.86597 0.94364 1.48690 1.12204 1.27670 1.46162 1.22162 0.86622 0.81115 0.81541 1.90622 1.83944 1.32736 1.39541 1.21587 0.87206 0.93331 1.00417 0.87631 1.59002 1.49729 1.05906 1.19984 1.21364 0.96993 0.95485 0.97898 1.18801 0.91666 0.95087 0.93952 1.21733 1.05569 1.22013 1.08810 0.92726 1.25901 0.98687 0.99109 0.95855 1.70107 1.20740 1.44436 1.21663 0.85474 0.78330 0.78845 0.78825 1.18849 1.20711 1.20108 1.22423 0.82644 0.98763 0.98209 0.92442 0.92885 0.92498 0.92292 0.91233 0.90842 0.91666 0.88808 0.88299 0.91393 0.90227 0.84129 0.84050 0.91719 0.94172 0.97646 0.98672 0.92880 0.92412 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.31 5.81 30.60 0.18 -1.13 16 3 C -0.10 -1.19 4.72 30.60 0.14 -1.04 16 4 C -0.09 -1.46 3.03 -9.40 -0.03 -1.49 16 5 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 6 C -0.12 -1.66 5.75 31.79 0.18 -1.48 16 7 C 0.08 1.83 6.18 86.73 0.54 2.37 16 8 N -0.61 -16.63 3.33 -811.80 -2.70 -19.33 16 9 C 0.50 16.94 7.09 87.66 0.62 17.56 16 10 O -0.59 -23.32 16.51 -3.03 -0.05 -23.37 16 11 C 0.09 3.21 2.57 44.17 0.11 3.32 16 12 H 0.11 3.53 7.52 -2.39 -0.02 3.51 16 13 N -0.82 -29.26 8.44 -171.80 -1.45 -30.71 16 14 C -0.08 -3.32 4.77 30.59 0.15 -3.18 16 15 C 0.04 2.22 4.86 29.85 0.15 2.37 16 16 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 17 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 18 C 0.00 0.13 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 20 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.10 2.26 6.38 86.86 0.55 2.81 16 25 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.69 7.63 -2.39 -0.02 0.67 16 30 H 0.07 0.78 8.05 -2.39 -0.02 0.76 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 1.08 7.97 -2.39 -0.02 1.06 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.65 6.69 -2.39 -0.02 1.63 16 35 H 0.08 1.59 7.93 -2.39 -0.02 1.57 16 36 H 0.35 12.63 8.58 -89.70 -0.77 11.86 16 37 H 0.35 10.69 9.06 -89.70 -0.81 9.87 16 38 H 0.06 2.54 6.61 -2.39 -0.02 2.52 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 44 H 0.07 1.51 8.03 -2.39 -0.02 1.49 16 Total: -1.00 -69.73 351.24 1.50 -68.23 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.61 Total: 26.08 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.00 Total: -10.97 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.87 Total: -106.54 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.73 1.50 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691595193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.637 kcal (2) G-P(sol) polarization free energy of solvation -69.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds