Wall clock time and date at job start Mon Mar 30 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 H 1.09000 * 109.99991 * 53.14225 * 3 2 1 5 5 C 1.54332 * 109.99232 * 292.10092 * 3 2 1 6 6 H 1.08999 * 110.51514 * 336.97158 * 5 3 2 7 7 C 1.52996 * 110.85044 * 100.19879 * 5 3 2 8 8 C 1.55163 * 103.02099 * 218.66713 * 5 3 2 9 9 C 1.54911 * 101.58329 * 35.30149 * 8 5 3 10 10 N 1.47033 * 109.88396 * 174.23124 * 3 2 1 11 11 C 1.34773 * 125.64514 * 298.39837 * 10 3 2 12 12 O 1.21278 * 120.00702 * 354.84590 * 11 10 3 13 13 C 1.50700 * 119.99583 * 174.84939 * 11 10 3 14 14 H 1.09004 * 109.47224 * 319.99567 * 13 11 10 15 15 N 1.46903 * 109.47308 * 199.99997 * 13 11 10 16 16 C 1.53002 * 109.47500 * 79.99689 * 13 11 10 17 17 C 1.52996 * 109.47050 * 184.99767 * 16 13 11 18 18 C 1.50702 * 109.46747 * 179.97438 * 17 16 13 19 19 H 1.07997 * 120.00067 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00185 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99553 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00133 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47456 * 270.00014 * 22 20 18 24 24 H 1.48504 * 109.47136 * 30.00495 * 22 20 18 25 25 H 1.48499 * 109.46866 * 150.00174 * 22 20 18 26 26 H 1.08996 * 109.47601 * 185.60183 * 1 2 3 27 27 H 1.09006 * 109.47069 * 305.59522 * 1 2 3 28 28 H 1.09002 * 109.46946 * 65.59231 * 1 2 3 29 29 H 1.08999 * 109.47259 * 240.00241 * 2 1 3 30 30 H 1.09006 * 109.47276 * 120.00051 * 2 1 3 31 31 H 1.08999 * 109.47349 * 175.14735 * 7 5 3 32 32 H 1.09000 * 109.46799 * 295.14168 * 7 5 3 33 33 H 1.09000 * 109.47404 * 55.14461 * 7 5 3 34 34 H 1.09006 * 111.00084 * 277.23518 * 8 5 3 35 35 H 1.08992 * 111.03623 * 153.39742 * 8 5 3 36 36 H 1.08996 * 110.37026 * 204.15006 * 9 8 5 37 37 H 1.09002 * 110.36298 * 81.83115 * 9 8 5 38 38 H 1.00904 * 110.99710 * 299.99841 * 15 13 11 39 39 H 1.00900 * 110.99717 * 63.95101 * 15 13 11 40 40 H 1.08998 * 109.46650 * 64.99899 * 16 13 11 41 41 H 1.08996 * 109.47042 * 305.00119 * 16 13 11 42 42 H 1.08998 * 109.47286 * 60.00521 * 17 16 13 43 43 H 1.08996 * 109.47485 * 300.00081 * 17 16 13 44 44 H 0.96998 * 120.00346 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5850 1.9988 0.8195 5 6 1.7014 2.1218 -1.3437 6 1 1.5582 1.3745 -2.1242 7 6 0.4628 3.0096 -1.2083 8 6 2.9627 2.9792 -1.6296 9 6 4.0873 2.0762 -1.0640 10 7 3.5037 1.4553 0.1390 11 6 4.1971 0.9739 1.1896 12 8 3.6091 0.5625 2.1672 13 6 5.7033 0.9469 1.1495 14 1 6.0351 0.6522 0.1539 15 7 6.2023 -0.0188 2.1376 16 6 6.2474 2.3389 1.4770 17 6 7.7687 2.3431 1.3148 18 6 8.3044 3.7143 1.6368 19 1 7.6276 4.5038 1.9284 20 6 9.6587 3.9612 1.5592 21 7 10.4829 3.0000 1.2036 22 14 10.3228 5.6607 1.9590 23 1 10.3540 6.4834 0.7232 24 1 9.4449 6.3112 2.9647 25 1 11.6975 5.5386 2.5072 26 1 -0.3634 -1.0227 0.1003 27 1 -0.3633 0.5982 0.8357 28 1 -0.3633 0.4247 -0.9358 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.2946 3.5439 -2.1433 32 1 -0.4053 2.3902 -0.9826 33 1 0.6164 3.7273 -0.4023 34 1 2.9188 3.9287 -1.0961 35 1 3.0920 3.1402 -2.6998 36 1 4.9573 2.6761 -0.7973 37 1 4.3611 1.3114 -1.7908 38 1 5.9079 0.2326 3.0695 39 1 5.9097 -0.9564 1.9066 40 1 5.9908 2.5967 2.5045 41 1 5.8076 3.0698 0.7985 42 1 8.0253 2.0853 0.2873 43 1 8.2085 1.6122 1.9934 44 1 10.1380 2.1176 0.9956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691598406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:23 Heat of formation + Delta-G solvation = -88.900448 kcal Electronic energy + Delta-G solvation = -21507.538725 eV Core-core repulsion = 18457.387216 eV Total energy + Delta-G solvation = -3050.151509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64128 -39.29857 -37.05513 -35.15917 -34.62046 -33.58390 -31.83342 -29.86449 -28.59484 -27.02255 -25.24000 -24.01196 -23.15912 -22.39144 -21.14937 -20.18940 -18.88364 -18.24028 -17.51412 -17.13184 -16.34008 -15.89821 -15.70944 -15.60496 -15.23999 -14.88177 -14.75633 -14.49265 -14.05771 -13.92087 -13.71454 -13.44186 -13.41406 -12.96735 -12.81998 -12.65358 -12.58087 -12.42718 -12.07800 -12.03853 -11.91214 -11.89121 -11.80014 -11.55178 -11.37677 -11.15851 -10.62179 -10.48889 -9.79273 -9.71531 -8.63326 -6.33218 1.39479 1.53580 1.63239 1.80680 1.89450 2.59492 3.21449 3.27524 3.46312 3.56234 3.71732 3.78681 3.93950 4.05099 4.14448 4.15076 4.26832 4.40276 4.43889 4.46412 4.57807 4.68082 4.71745 4.78587 4.84777 4.87491 4.99926 5.03809 5.04927 5.11567 5.13201 5.21098 5.34175 5.40794 5.42501 5.46202 5.59427 5.94844 6.04361 6.24836 6.35746 6.39237 6.64461 6.97543 7.48161 8.77725 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.004373 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.379904 B = 6401.107846 C = 7103.525195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C 0.131 3.869 4 H 0.055 0.945 5 C -0.088 4.088 6 H 0.102 0.898 7 C -0.142 4.142 8 C -0.123 4.123 9 C 0.082 3.918 10 N -0.612 5.612 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.089 3.911 14 H 0.104 0.896 15 N -0.818 5.818 16 C -0.074 4.074 17 C 0.026 3.974 18 C -0.621 4.621 19 H 0.045 0.955 20 C -0.037 4.037 21 N -0.938 5.938 22 Si 1.118 2.882 23 H -0.269 1.269 24 H -0.273 1.273 25 H -0.284 1.284 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.345 0.655 39 H 0.347 0.653 40 H 0.038 0.962 41 H 0.066 0.934 42 H -0.009 1.009 43 H 0.002 0.998 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 -2.462 -9.378 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.028 3.972 4 H 0.073 0.927 5 C -0.107 4.107 6 H 0.120 0.880 7 C -0.199 4.199 8 C -0.161 4.161 9 C -0.040 4.040 10 N -0.344 5.344 11 C 0.287 3.713 12 O -0.462 6.462 13 C -0.026 4.026 14 H 0.122 0.878 15 N -0.346 5.346 16 C -0.112 4.112 17 C -0.011 4.011 18 C -0.659 4.659 19 H 0.063 0.937 20 C -0.235 4.235 21 N -0.575 5.575 22 Si 0.939 3.061 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.209 1.209 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.010 0.990 43 H 0.020 0.980 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.646 -1.599 -8.930 21.640 hybrid contribution -2.033 -1.443 0.520 2.547 sum -21.679 -3.042 -8.411 23.451 Atomic orbital electron populations 1.21730 0.93220 1.02272 1.02705 1.21795 0.97871 0.95570 1.01431 1.21937 0.79517 0.96845 0.98885 0.92701 1.22289 0.95809 0.97928 0.94671 0.87959 1.21830 0.96239 0.99128 1.02699 1.22905 0.92521 0.97537 1.03108 1.22712 0.98049 0.96990 0.86237 1.48782 1.07846 1.58852 1.18920 1.22020 0.91627 0.76287 0.81368 1.90618 1.72075 1.50184 1.33302 1.21573 0.86897 0.95541 0.98624 0.87772 1.59015 1.64850 1.05158 1.05626 1.21272 0.97170 0.92770 1.00002 1.18965 0.91811 0.95602 0.94691 1.22532 0.95268 0.97848 1.50222 0.93668 1.27352 0.94470 1.07992 0.93667 1.70863 1.38183 1.03666 1.44788 0.82927 0.75410 0.70326 0.77394 1.19413 1.19852 1.20933 0.92083 0.93143 0.90288 0.91215 0.94306 0.90329 0.91255 0.93423 0.90982 0.86977 0.90950 0.89574 0.84132 0.83970 0.94298 0.91590 0.99043 0.98008 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.08 71.98 0.65 -1.56 16 2 C -0.13 -2.74 5.41 30.59 0.17 -2.58 16 3 C 0.13 2.95 2.48 45.34 0.11 3.06 16 4 H 0.05 1.44 7.79 -2.39 -0.02 1.43 16 5 C -0.09 -1.30 2.50 -9.60 -0.02 -1.32 16 6 H 0.10 1.21 7.75 -2.39 -0.02 1.19 16 7 C -0.14 -1.68 8.99 71.98 0.65 -1.03 16 8 C -0.12 -1.95 6.54 31.99 0.21 -1.74 16 9 C 0.08 1.80 6.39 86.86 0.55 2.36 16 10 N -0.61 -16.66 3.06 -788.03 -2.41 -19.07 16 11 C 0.50 16.98 6.80 87.66 0.60 17.58 16 12 O -0.58 -22.89 15.42 -3.02 -0.05 -22.93 16 13 C 0.09 3.18 2.48 44.17 0.11 3.29 16 14 H 0.10 3.49 7.77 -2.38 -0.02 3.48 16 15 N -0.82 -29.13 8.44 -171.79 -1.45 -30.58 16 16 C -0.07 -3.14 4.64 30.59 0.14 -2.99 16 17 C 0.03 1.39 4.17 29.85 0.12 1.52 16 18 C -0.62 -36.08 9.11 25.60 0.23 -35.85 16 19 H 0.04 2.57 7.74 -2.91 -0.02 2.55 16 20 C -0.04 -2.19 5.46 84.66 0.46 -1.73 16 21 N -0.94 -58.99 13.65 21.45 0.29 -58.69 16 22 Si 1.12 51.05 29.90 68.60 2.05 53.10 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.08 0.90 6.41 -2.39 -0.02 0.88 16 29 H 0.07 1.35 8.00 -2.39 -0.02 1.33 16 30 H 0.04 1.10 6.87 -2.38 -0.02 1.08 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.72 6.26 -2.39 -0.01 0.70 16 33 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 34 H 0.07 1.26 8.05 -2.38 -0.02 1.25 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.87 5.83 -2.39 -0.01 1.85 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.35 12.66 8.58 -89.69 -0.77 11.89 16 39 H 0.35 10.67 9.06 -89.69 -0.81 9.86 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.64 6.23 -2.39 -0.01 2.63 16 42 H -0.01 -0.48 8.01 -2.39 -0.02 -0.50 16 43 H 0.00 0.09 7.62 -2.39 -0.02 0.07 16 44 H 0.26 16.42 7.22 -92.71 -0.67 15.75 16 Total: -1.00 -71.87 341.99 1.92 -69.95 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: -0.50 Total: 29.24 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 3.99 Total: -21.00 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.57 Total: -108.35 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.93 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.05 Total: 53.10 kcal Total: -71.87 1.92 -69.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691598406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.954 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds