Wall clock time and date at job start Mon Mar 30 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47226 * 2 1 4 4 H 1.09006 * 109.87186 * 53.52581 * 3 2 1 5 5 C 1.54325 * 109.88461 * 292.35524 * 3 2 1 6 6 H 1.09002 * 110.71781 * 336.74512 * 5 3 2 7 7 C 1.53002 * 110.72216 * 99.84318 * 5 3 2 8 8 C 1.55159 * 102.93850 * 218.38789 * 5 3 2 9 9 C 1.54690 * 101.67891 * 35.33206 * 8 5 3 10 10 N 1.47013 * 109.88571 * 174.54084 * 3 2 1 11 11 C 1.34782 * 125.64905 * 298.32545 * 10 3 2 12 12 O 1.21281 * 120.00060 * 354.95350 * 11 10 3 13 13 C 1.50698 * 120.00149 * 174.95032 * 11 10 3 14 14 H 1.09012 * 109.47147 * 39.99947 * 13 11 10 15 15 N 1.46895 * 109.47451 * 160.00083 * 13 11 10 16 16 C 1.52995 * 109.47340 * 280.00489 * 13 11 10 17 17 C 1.53005 * 109.47332 * 174.99756 * 16 13 11 18 18 C 1.50701 * 109.47248 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99924 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99986 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00206 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47028 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47295 * 240.00254 * 22 20 18 25 25 H 1.48500 * 109.47241 * 120.00132 * 22 20 18 26 26 H 1.08993 * 109.47412 * 305.55700 * 1 2 3 27 27 H 1.09000 * 109.47445 * 65.56205 * 1 2 3 28 28 H 1.09006 * 109.47129 * 185.55697 * 1 2 3 29 29 H 1.09003 * 109.47231 * 240.00710 * 2 1 3 30 30 H 1.09000 * 109.47244 * 120.00276 * 2 1 3 31 31 H 1.09002 * 109.46504 * 60.00227 * 7 5 3 32 32 H 1.08997 * 109.46902 * 179.97438 * 7 5 3 33 33 H 1.09001 * 109.46859 * 300.00165 * 7 5 3 34 34 H 1.09004 * 111.00038 * 153.57417 * 8 5 3 35 35 H 1.08997 * 111.00254 * 277.41882 * 8 5 3 36 36 H 1.09003 * 110.38802 * 204.36017 * 9 8 5 37 37 H 1.09009 * 110.23389 * 82.11178 * 9 8 5 38 38 H 1.00906 * 111.00013 * 296.05061 * 15 13 11 39 39 H 1.00897 * 111.00013 * 59.99548 * 15 13 11 40 40 H 1.09000 * 109.47719 * 54.99467 * 16 13 11 41 41 H 1.09003 * 109.47133 * 294.99802 * 16 13 11 42 42 H 1.09001 * 109.46679 * 59.99974 * 17 16 13 43 43 H 1.08995 * 109.47384 * 300.00125 * 17 16 13 44 44 H 0.97006 * 119.99784 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5890 1.9950 0.8243 5 6 1.6946 2.1214 -1.3422 6 1 1.5514 1.3768 -2.1253 7 6 0.4505 3.0006 -1.1998 8 6 2.9517 2.9845 -1.6286 9 6 4.0812 2.0882 -1.0683 10 7 3.5042 1.4552 0.1315 11 6 4.2031 0.9732 1.1783 12 8 3.6199 0.5595 2.1580 13 6 5.7091 0.9482 1.1316 14 1 6.0734 1.8642 0.6661 15 7 6.2399 0.8484 2.4976 16 6 6.1740 -0.2588 0.3143 17 6 7.6958 -0.2156 0.1615 18 6 8.1538 -1.4048 -0.6430 19 1 7.4317 -2.1201 -1.0083 20 6 9.4946 -1.5797 -0.9126 21 7 10.3739 -0.7090 -0.4673 22 14 10.0624 -3.0541 -1.9091 23 1 8.8863 -3.8775 -2.2888 24 1 10.9974 -3.8715 -1.0949 25 1 10.7547 -2.5853 -3.1363 26 1 -0.3634 0.5976 0.8360 27 1 -0.3634 0.4251 -0.9356 28 1 -0.3634 -1.0229 0.0995 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.6346 3.7721 -0.4521 32 1 0.2256 3.4696 -2.1576 33 1 -0.3945 2.3866 -0.8880 34 1 3.0764 3.1500 -2.6988 35 1 2.9061 3.9316 -1.0912 36 1 4.9474 2.6927 -0.7991 37 1 4.3593 1.3301 -1.8007 38 1 6.0006 1.6656 3.0391 39 1 5.9163 0.0070 2.9507 40 1 5.7090 -0.2314 -0.6711 41 1 5.8862 -1.1770 0.8264 42 1 8.1608 -0.2432 1.1469 43 1 7.9837 0.7025 -0.3506 44 1 10.0791 0.0565 0.0505 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691598409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:26 Heat of formation + Delta-G solvation = -67.589935 kcal Electronic energy + Delta-G solvation = -21529.151784 eV Core-core repulsion = 18479.924369 eV Total energy + Delta-G solvation = -3049.227416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48539 -38.16292 -35.34785 -33.79291 -32.99840 -32.70929 -29.96010 -29.03908 -27.35440 -25.55010 -23.62811 -22.85289 -22.07898 -20.79559 -20.28052 -18.83545 -17.22538 -16.62629 -16.27704 -15.60752 -15.30106 -14.94304 -14.38907 -13.98678 -13.72287 -13.67946 -13.41584 -13.23908 -12.91060 -12.82163 -12.52257 -12.22242 -12.10978 -11.97969 -11.75154 -11.51427 -11.24904 -11.13239 -10.90585 -10.77589 -10.64904 -10.46089 -10.15129 -10.08767 -9.91949 -9.65348 -8.62665 -8.49409 -8.33223 -8.20269 -6.27755 -3.96037 2.74272 3.03545 3.47440 3.51826 3.64824 4.20415 4.36308 4.53474 4.60158 4.79676 4.88307 5.01638 5.01867 5.09010 5.14146 5.23394 5.26111 5.35323 5.46516 5.50140 5.54495 5.57283 5.63452 5.71396 5.73291 5.77791 5.85143 5.95024 6.02324 6.10749 6.18691 6.35233 6.41895 6.56694 6.95325 7.33195 7.53165 7.58652 7.71473 7.75699 8.27128 8.31218 8.56762 8.98216 9.75977 11.13412 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.004366 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.263805 B = 6411.944345 C = 6659.577235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.140 3.860 4 H 0.072 0.928 5 C -0.100 4.100 6 H 0.086 0.914 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.097 3.903 10 N -0.614 5.614 11 C 0.499 3.501 12 O -0.552 6.552 13 C 0.080 3.920 14 H 0.095 0.905 15 N -0.809 5.809 16 C -0.085 4.085 17 C 0.019 3.981 18 C -0.603 4.603 19 H 0.045 0.955 20 C 0.015 3.985 21 N -0.915 5.915 22 Si 1.072 2.928 23 H -0.291 1.291 24 H -0.287 1.287 25 H -0.288 1.288 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.334 0.666 39 H 0.348 0.652 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.003 0.997 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 8.417 -2.347 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.036 3.964 4 H 0.090 0.910 5 C -0.119 4.119 6 H 0.104 0.896 7 C -0.201 4.201 8 C -0.168 4.168 9 C -0.026 4.026 10 N -0.348 5.348 11 C 0.288 3.712 12 O -0.430 6.430 13 C -0.036 4.036 14 H 0.113 0.887 15 N -0.337 5.337 16 C -0.124 4.124 17 C -0.018 4.018 18 C -0.641 4.641 19 H 0.064 0.936 20 C -0.189 4.189 21 N -0.552 5.552 22 Si 0.901 3.099 23 H -0.217 1.217 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.801 7.389 -2.705 19.463 hybrid contribution -2.419 0.786 0.853 2.683 sum -20.220 8.175 -1.852 21.889 Atomic orbital electron populations 1.21762 0.95345 1.01750 1.01592 1.21871 0.95984 0.96361 1.03161 1.21676 0.81029 0.96359 0.97299 0.91007 1.22292 0.95253 0.97760 0.96603 0.89558 1.21839 0.96905 0.99396 1.01978 1.22850 0.93906 0.98213 1.01793 1.22357 0.96810 0.96167 0.87297 1.48717 1.06602 1.60058 1.19465 1.22379 0.92077 0.75812 0.80972 1.90634 1.72049 1.48092 1.32235 1.21833 0.85842 1.02853 0.93055 0.88749 1.59036 1.64102 1.08010 1.02531 1.21473 1.00695 0.93519 0.96664 1.19131 0.88883 0.96525 0.97269 1.22134 0.94887 1.10191 1.36907 0.93619 1.25774 0.93227 1.02148 0.97719 1.70696 1.36786 1.13108 1.34598 0.83514 0.75203 0.75061 0.76139 1.21679 1.21382 1.21445 0.92760 0.92484 0.92636 0.91786 0.90772 0.92516 0.92159 0.91958 0.89650 0.90646 0.90191 0.90671 0.85428 0.83791 0.92734 0.92829 0.95593 0.97890 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.96 37.16 0.33 -1.05 16 2 C -0.14 -1.66 5.41 -26.73 -0.14 -1.80 16 3 C 0.14 1.66 2.47 -66.96 -0.17 1.50 16 4 H 0.07 0.91 7.83 -51.93 -0.41 0.51 16 5 C -0.10 -0.88 2.50 -88.78 -0.22 -1.10 16 6 H 0.09 0.74 7.76 -51.93 -0.40 0.34 16 7 C -0.14 -1.02 8.99 37.16 0.33 -0.68 16 8 C -0.13 -1.12 6.53 -24.70 -0.16 -1.28 16 9 C 0.10 1.11 6.46 -2.65 -0.02 1.10 16 10 N -0.61 -8.53 3.07 -163.15 -0.50 -9.03 16 11 C 0.50 8.41 6.81 -10.98 -0.07 8.34 16 12 O -0.55 -10.62 15.43 5.56 0.09 -10.53 16 13 C 0.08 1.40 2.62 -68.87 -0.18 1.22 16 14 H 0.09 1.57 6.88 -51.92 -0.36 1.22 16 15 N -0.81 -14.09 8.44 -5.66 -0.05 -14.14 16 16 C -0.09 -1.79 4.78 -26.73 -0.13 -1.92 16 17 C 0.02 0.49 4.17 -27.88 -0.12 0.37 16 18 C -0.60 -17.41 9.11 -34.44 -0.31 -17.72 16 19 H 0.05 1.31 7.74 -52.48 -0.41 0.90 16 20 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 21 N -0.92 -28.45 13.65 55.43 0.76 -27.69 16 22 Si 1.07 25.82 29.90 -169.99 -5.08 20.74 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.79 8.01 -51.93 -0.42 0.38 16 30 H 0.07 1.14 6.88 -51.93 -0.36 0.78 16 31 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.42 6.15 -51.93 -0.32 0.10 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 36 H 0.08 0.90 6.99 -51.93 -0.36 0.54 16 37 H 0.08 0.90 7.97 -51.92 -0.41 0.49 16 38 H 0.33 5.07 9.06 -39.29 -0.36 4.71 16 39 H 0.35 6.18 8.58 -39.29 -0.34 5.85 16 40 H 0.05 1.10 7.80 -51.93 -0.40 0.70 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.71 7.62 -51.93 -0.40 0.32 16 43 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 44 H 0.27 8.41 7.22 -40.82 -0.29 8.12 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -32.93 343.86 -8.29 -41.21 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.73 Total: 6.95 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.95 Total: -12.69 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.21 Total: -50.86 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.93 -8.29 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691598409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.375 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds