Wall clock time and date at job start Mon Mar 30 2020 05:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47357 * 2 1 4 4 H 1.09001 * 115.54977 * 29.32120 * 3 2 1 5 5 C 1.53000 * 117.51763 * 243.62834 * 3 2 1 6 6 C 1.52995 * 117.50021 * 174.99919 * 3 2 1 7 7 H 1.09000 * 117.49744 * 0.02562 * 6 3 2 8 8 C 1.53001 * 117.50059 * 214.99850 * 6 3 2 9 9 N 1.46493 * 109.47084 * 174.99811 * 8 6 3 10 10 C 1.34784 * 119.99864 * 180.02562 * 9 8 6 11 11 O 1.21283 * 119.99649 * 359.72839 * 10 9 8 12 12 C 1.50694 * 119.99988 * 179.72721 * 10 9 8 13 13 H 1.09000 * 109.47341 * 319.99883 * 12 10 9 14 14 N 1.46898 * 109.47184 * 200.00258 * 12 10 9 15 15 C 1.52998 * 109.47176 * 80.00173 * 12 10 9 16 16 C 1.52999 * 109.47234 * 184.99928 * 15 12 10 17 17 C 1.53001 * 109.47545 * 179.97438 * 16 15 12 18 18 C 1.50690 * 109.47342 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00341 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00306 * 180.02562 * 18 17 16 21 21 N 1.31524 * 119.99469 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00521 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46790 * 89.99790 * 22 20 18 24 24 H 1.48493 * 109.47037 * 209.99670 * 22 20 18 25 25 H 1.48497 * 109.46962 * 330.00066 * 22 20 18 26 26 H 1.09004 * 109.47013 * 60.00278 * 1 2 3 27 27 H 1.09001 * 109.47601 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47394 * 300.00095 * 1 2 3 29 29 H 1.09003 * 109.47023 * 239.99683 * 2 1 3 30 30 H 1.09002 * 109.46789 * 120.00214 * 2 1 3 31 31 H 1.09003 * 117.49975 * 145.02139 * 5 3 2 32 32 H 1.08997 * 117.49855 * 0.02562 * 5 3 2 33 33 H 1.09007 * 109.46593 * 55.00068 * 8 6 3 34 34 H 1.09006 * 109.47216 * 295.00526 * 8 6 3 35 35 H 0.97000 * 120.00740 * 359.72857 * 9 8 6 36 36 H 1.00908 * 111.00028 * 299.99873 * 14 12 10 37 37 H 1.00900 * 111.00355 * 63.94725 * 14 12 10 38 38 H 1.09002 * 109.47386 * 304.99995 * 15 12 10 39 39 H 1.09002 * 109.47383 * 64.99620 * 15 12 10 40 40 H 1.08998 * 109.47042 * 299.99793 * 16 15 12 41 41 H 1.09002 * 109.47187 * 59.99572 * 16 15 12 42 42 H 1.08998 * 109.46914 * 300.00033 * 17 16 15 43 43 H 1.09002 * 109.47095 * 59.99678 * 17 16 15 44 44 H 0.96997 * 119.99492 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1715 0.4816 5 6 2.8440 1.9080 -1.2157 6 6 3.5501 1.6578 0.1183 7 1 4.1803 0.7718 0.1957 8 6 4.0301 2.8801 0.9036 9 7 5.4911 2.8508 1.0076 10 6 6.1399 3.8344 1.6620 11 8 5.5145 4.7461 2.1606 12 6 7.6423 3.8011 1.7743 13 1 7.9704 2.7778 1.9569 14 7 8.0692 4.6583 2.8883 15 6 8.2625 4.3108 0.4719 16 6 9.7836 4.1606 0.5383 17 6 10.4038 4.6698 -0.7644 18 6 11.9020 4.5213 -0.6992 19 1 12.3656 4.1057 0.1833 20 6 12.6811 4.9169 -1.7658 21 7 12.1166 5.4234 -2.8403 22 14 14.5383 4.7334 -1.6847 23 1 14.9277 3.4017 -2.2141 24 1 15.1768 5.7967 -2.5013 25 1 14.9867 4.8558 -0.2744 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.7212 2.9433 -1.5339 32 1 3.0092 1.1867 -2.0160 33 1 3.5943 2.8640 1.9026 34 1 3.7206 3.7885 0.3868 35 1 5.9912 2.1214 0.6092 36 1 7.7767 5.6130 2.7426 37 1 7.7253 4.3052 3.7687 38 1 7.8763 3.7304 -0.3661 39 1 8.0067 5.3615 0.3344 40 1 10.1698 4.7411 1.3761 41 1 10.0393 3.1100 0.6757 42 1 10.0176 4.0889 -1.6020 43 1 10.1481 5.7204 -0.9023 44 1 12.6647 5.7014 -3.5908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691599702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:00 Heat of formation + Delta-G solvation = -52.189820 kcal Electronic energy + Delta-G solvation = -19808.371173 eV Core-core repulsion = 16759.811557 eV Total energy + Delta-G solvation = -3048.559617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02562 -38.53189 -35.72849 -34.69916 -33.31190 -32.36282 -31.32479 -28.39673 -27.12735 -24.68211 -24.13954 -22.35542 -21.31637 -20.92615 -19.99821 -19.86694 -17.16854 -16.61972 -16.29435 -15.77999 -15.23022 -15.12836 -14.89872 -14.44173 -14.35216 -14.08318 -13.70830 -13.46722 -12.94987 -12.64923 -12.47247 -12.35064 -11.82878 -11.75690 -11.64502 -11.45525 -11.38941 -11.12447 -10.73050 -10.62481 -10.40764 -10.37606 -10.33352 -10.10025 -9.58543 -9.21515 -9.14920 -9.01865 -8.53791 -8.27990 -5.93860 -3.95342 2.59685 3.01981 3.35801 3.41891 3.44017 3.46206 4.17658 4.43702 4.50432 4.52656 4.64069 4.77162 4.81088 4.94447 4.96504 5.03592 5.20035 5.33666 5.41070 5.41769 5.43299 5.48507 5.52872 5.59835 5.68514 5.74436 5.83493 5.96216 5.97797 6.14963 6.32520 6.47005 6.84477 7.03510 7.12282 7.26724 7.42715 7.54313 7.76684 7.92409 8.08008 8.15149 8.51356 9.12403 9.68247 11.17596 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024057 B = 0.002803 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.641778 B = 9987.326064 C =10785.030052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.142 4.142 4 H 0.106 0.894 5 C -0.170 4.170 6 C -0.167 4.167 7 H 0.111 0.889 8 C 0.149 3.851 9 N -0.727 5.727 10 C 0.482 3.518 11 O -0.552 6.552 12 C 0.078 3.922 13 H 0.100 0.900 14 N -0.812 5.812 15 C -0.103 4.103 16 C -0.100 4.100 17 C 0.019 3.981 18 C -0.516 4.516 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.350 0.650 37 H 0.337 0.663 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.044 0.956 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 -10.661 6.614 24.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.160 4.160 4 H 0.124 0.876 5 C -0.207 4.207 6 C -0.185 4.185 7 H 0.129 0.871 8 C 0.025 3.975 9 N -0.380 5.380 10 C 0.267 3.733 11 O -0.430 6.430 12 C -0.038 4.038 13 H 0.118 0.882 14 N -0.340 5.340 15 C -0.141 4.141 16 C -0.138 4.138 17 C -0.018 4.018 18 C -0.554 4.554 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.238 0.762 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.118 -10.104 6.597 24.323 hybrid contribution 0.143 -0.277 -0.211 0.376 sum -20.975 -10.380 6.386 24.259 Atomic orbital electron populations 1.21747 0.95367 1.01637 1.01983 1.21133 0.96074 0.93916 1.02097 1.22484 0.92622 0.98379 1.02542 0.87582 1.23270 1.03335 1.02766 0.91318 1.22569 0.95700 0.99734 1.00508 0.87114 1.20850 0.80580 0.96389 0.99647 1.46138 1.07279 1.27256 1.57278 1.22565 0.92590 0.81195 0.76949 1.90667 1.69403 1.35041 1.47891 1.21760 0.86822 0.99823 0.95387 0.88213 1.59047 1.65033 1.06582 1.03312 1.21648 0.98936 1.01125 0.92439 1.21539 0.90575 1.00441 1.01204 1.19122 0.95065 0.96238 0.91382 1.21283 0.92146 1.40791 1.01178 0.92657 1.25045 0.98586 0.95435 0.95598 1.69975 1.35276 1.42917 1.05579 0.86607 0.85838 0.77632 0.78008 1.20763 1.21321 1.19855 0.92564 0.92678 0.92651 0.91727 0.91580 0.88505 0.88465 0.91449 0.91468 0.76192 0.83584 0.85062 0.91914 0.91962 0.91836 0.93690 0.96976 0.96784 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.87 37.16 0.37 -0.46 16 2 C -0.09 -0.57 6.22 -26.73 -0.17 -0.74 16 3 C -0.14 -0.99 5.46 -90.62 -0.49 -1.48 16 4 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 5 C -0.17 -1.27 9.82 -26.73 -0.26 -1.53 16 6 C -0.17 -1.29 5.57 -90.62 -0.50 -1.79 16 7 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 8 C 0.15 1.49 5.96 -4.04 -0.02 1.47 16 9 N -0.73 -7.88 5.56 -60.29 -0.33 -8.22 16 10 C 0.48 6.66 7.07 -10.98 -0.08 6.58 16 11 O -0.55 -9.38 16.25 5.56 0.09 -9.29 16 12 C 0.08 1.07 3.15 -68.87 -0.22 0.86 16 13 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 14 N -0.81 -11.32 8.44 -5.66 -0.05 -11.36 16 15 C -0.10 -1.72 4.84 -26.73 -0.13 -1.85 16 16 C -0.10 -2.05 5.04 -26.73 -0.13 -2.19 16 17 C 0.02 0.49 4.97 -27.89 -0.14 0.36 16 18 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.05 1.57 5.46 -17.81 -0.10 1.48 16 21 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 22 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.38 7.88 -51.93 -0.41 -0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 32 H 0.10 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.40 3.54 8.40 -40.82 -0.34 3.20 16 36 H 0.35 5.09 8.58 -39.29 -0.34 4.76 16 37 H 0.34 4.08 9.06 -39.29 -0.36 3.72 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.35 7.75 -51.93 -0.40 0.95 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -32.66 364.26 -9.40 -42.06 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.12 Total: 5.50 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -2.19 Total: -14.46 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.35 Total: -46.26 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.66 -9.40 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691599702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.128 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds