Wall clock time and date at job start Mon Mar 30 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47327 * 2 1 4 4 H 1.09012 * 109.47080 * 305.00045 * 3 2 1 5 5 N 1.46504 * 109.47111 * 64.99467 * 3 2 1 6 6 C 1.34778 * 119.99836 * 204.81935 * 5 3 2 7 7 O 1.21281 * 120.00214 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99573 * 180.02562 * 6 5 3 9 9 H 1.08996 * 109.47388 * 319.99909 * 8 6 5 10 10 N 1.46909 * 109.46861 * 200.00433 * 8 6 5 11 11 C 1.52997 * 109.47344 * 80.00591 * 8 6 5 12 12 C 1.53000 * 109.47396 * 184.99751 * 11 8 6 13 13 C 1.52998 * 109.47078 * 179.97438 * 12 11 8 14 14 C 1.50695 * 109.46965 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00390 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46674 * 59.99651 * 18 16 14 20 20 H 1.48495 * 109.47573 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46958 * 300.00285 * 18 16 14 22 22 C 1.52994 * 109.47558 * 185.00102 * 3 2 1 23 23 C 1.53000 * 117.50323 * 133.28929 * 22 3 2 24 24 C 1.52999 * 117.50366 * 64.62704 * 22 3 2 25 25 H 1.08999 * 109.47282 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.46711 * 60.00433 * 1 2 3 27 27 H 1.09002 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46960 * 239.99720 * 2 1 3 29 29 H 1.09007 * 109.47121 * 119.99824 * 2 1 3 30 30 H 0.96998 * 119.99623 * 24.83017 * 5 3 2 31 31 H 1.00897 * 110.99534 * 299.99822 * 10 8 6 32 32 H 1.00894 * 111.00062 * 63.95513 * 10 8 6 33 33 H 1.08998 * 109.47209 * 64.99589 * 11 8 6 34 34 H 1.09003 * 109.46786 * 304.99810 * 11 8 6 35 35 H 1.09006 * 109.46783 * 59.99791 * 12 11 8 36 36 H 1.08997 * 109.47173 * 300.00253 * 12 11 8 37 37 H 1.08997 * 109.47690 * 300.00383 * 13 12 11 38 38 H 1.08998 * 109.47003 * 60.00158 * 13 12 11 39 39 H 0.97006 * 120.00320 * 180.02562 * 17 16 14 40 40 H 1.09004 * 115.54702 * 278.96018 * 22 3 2 41 41 H 1.08999 * 117.49941 * 0.02562 * 23 22 3 42 42 H 1.08998 * 117.49908 * 145.02002 * 23 22 3 43 43 H 1.09000 * 117.50323 * 214.98599 * 24 22 3 44 44 H 1.09004 * 117.49747 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0974 1.2518 6 6 1.5291 3.4387 1.3004 7 8 1.7387 4.1033 0.3078 8 6 1.1309 4.1125 2.5882 9 1 0.3616 3.5213 3.0849 10 7 0.6062 5.4535 2.2973 11 6 2.3528 4.2300 3.5014 12 6 1.9248 4.7997 4.8554 13 6 3.1467 4.9166 5.7688 14 6 2.7250 5.4770 7.1025 15 1 1.6890 5.7247 7.2811 16 6 3.6617 5.6737 8.0949 17 7 4.9233 5.3726 7.8774 18 14 3.1392 6.3691 9.7481 19 1 2.1399 5.4649 10.3719 20 1 4.3252 6.4837 10.6343 21 1 2.5368 7.7123 9.5520 22 6 3.5648 1.4443 -0.1257 23 6 4.1888 2.4040 -1.1408 24 6 4.1675 0.8995 -1.4222 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.4845 1.5658 2.0456 31 1 1.3012 6.0215 1.8364 32 1 -0.2389 5.4000 1.7488 33 1 3.0862 4.8937 3.0435 34 1 2.7949 3.2441 3.6454 35 1 1.1914 4.1359 5.3134 36 1 1.4826 5.7855 4.7115 37 1 3.5885 3.9306 5.9127 38 1 3.8803 5.5801 5.3110 39 1 5.5823 5.5106 8.5757 40 1 4.1129 1.2635 0.7989 41 1 3.5131 3.0344 -1.7188 42 1 5.1477 2.8543 -0.8842 43 1 5.1123 0.3607 -1.3506 44 1 3.4776 0.5401 -2.1858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691603295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:56 Heat of formation + Delta-G solvation = -47.809406 kcal Electronic energy + Delta-G solvation = -20672.867661 eV Core-core repulsion = 17624.497994 eV Total energy + Delta-G solvation = -3048.369668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19241 -38.03001 -35.63581 -34.99700 -33.30366 -32.38583 -31.31883 -28.14427 -27.03243 -24.81741 -22.90455 -22.34903 -21.93395 -20.44546 -20.18686 -19.96922 -17.17541 -16.80519 -16.32308 -15.84419 -15.40908 -15.02078 -14.46406 -14.42465 -14.15592 -13.92618 -13.80663 -13.07259 -12.93177 -12.67955 -12.36909 -11.75773 -11.74323 -11.67359 -11.56306 -11.38385 -11.21533 -11.10996 -10.70765 -10.64616 -10.57755 -10.39863 -10.16790 -10.07880 -9.57920 -9.20214 -9.13581 -9.02749 -8.51069 -8.27666 -5.93606 -3.95273 2.64355 3.10852 3.37601 3.41555 3.44560 3.67342 4.39677 4.51127 4.59673 4.66249 4.76983 4.83478 4.92278 4.97041 5.00994 5.21620 5.22026 5.42013 5.42587 5.45211 5.49341 5.55463 5.63847 5.73411 5.82559 5.93982 5.97057 5.98810 6.07428 6.16275 6.43795 6.47735 6.84956 7.03951 7.14220 7.26974 7.47687 7.55637 7.76488 7.92551 8.08076 8.21718 8.51447 9.12241 9.68353 11.17796 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.003425 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.695468 B = 8174.146614 C = 8433.588960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.175 3.825 4 H 0.085 0.915 5 N -0.722 5.722 6 C 0.485 3.515 7 O -0.547 6.547 8 C 0.077 3.923 9 H 0.098 0.902 10 N -0.812 5.812 11 C -0.102 4.102 12 C -0.100 4.100 13 C 0.020 3.980 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.167 4.167 23 C -0.166 4.166 24 C -0.178 4.178 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.401 0.599 31 H 0.350 0.650 32 H 0.337 0.663 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 -11.762 -18.211 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.069 3.931 4 H 0.103 0.897 5 N -0.374 5.374 6 C 0.270 3.730 7 O -0.424 6.424 8 C -0.039 4.039 9 H 0.116 0.884 10 N -0.340 5.340 11 C -0.140 4.140 12 C -0.137 4.137 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.186 4.186 23 C -0.203 4.203 24 C -0.216 4.216 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.236 0.764 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.030 0.970 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.582 -11.176 -18.042 22.220 hybrid contribution 0.053 -0.220 0.319 0.391 sum -6.529 -11.396 -17.722 22.059 Atomic orbital electron populations 1.21780 0.95320 1.01723 1.02199 1.21782 0.96246 0.95362 1.03287 1.20515 0.91598 0.93002 0.87941 0.89733 1.46189 1.70500 1.07414 1.13284 1.22488 0.76039 0.82303 0.92196 1.90652 1.50402 1.64087 1.37244 1.21755 0.99796 0.90645 0.91666 0.88387 1.59041 1.09726 1.10825 1.54406 1.21627 0.94265 1.01487 0.96646 1.21536 0.99953 1.00278 0.91982 1.19114 0.92430 0.96757 0.93449 1.21251 0.94276 1.41995 0.98021 0.92715 1.25029 0.94970 0.95805 0.98741 1.69960 1.01204 1.48866 1.33727 0.86677 0.77857 0.79692 0.83881 1.20292 1.21390 1.20237 1.22702 0.95535 1.05742 0.94612 1.22947 1.02560 0.92172 1.02613 1.22934 1.02500 0.97288 0.98834 0.92420 0.92794 0.92473 0.90439 0.91137 0.76421 0.83615 0.85123 0.92012 0.92011 0.93735 0.91867 0.97007 0.96808 0.93072 0.87665 0.88521 0.89039 0.88821 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.80 37.16 0.36 -0.70 16 2 C -0.13 -0.93 5.42 -26.74 -0.14 -1.08 16 3 C 0.17 1.70 2.15 -67.94 -0.15 1.55 16 4 H 0.08 0.97 7.38 -51.92 -0.38 0.59 16 5 N -0.72 -7.55 4.53 -53.81 -0.24 -7.79 16 6 C 0.48 6.44 7.03 -10.98 -0.08 6.37 16 7 O -0.55 -8.81 15.92 5.56 0.09 -8.73 16 8 C 0.08 1.05 3.15 -68.86 -0.22 0.83 16 9 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 10 N -0.81 -11.20 8.44 -5.65 -0.05 -11.25 16 11 C -0.10 -1.70 4.84 -26.73 -0.13 -1.82 16 12 C -0.10 -2.05 5.04 -26.73 -0.13 -2.18 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.17 -1.71 5.36 -90.62 -0.49 -2.20 16 23 C -0.17 -1.82 10.18 -26.69 -0.27 -2.09 16 24 C -0.18 -1.54 9.73 -26.69 -0.26 -1.80 16 25 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.51 7.46 -51.93 -0.39 0.12 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 31 H 0.35 5.06 8.58 -39.29 -0.34 4.72 16 32 H 0.34 4.03 9.06 -39.29 -0.36 3.68 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.35 7.75 -51.93 -0.40 0.94 16 37 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -32.15 361.58 -9.15 -41.30 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.06 Total: 7.19 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.05 Total: -16.46 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.44 Total: -45.71 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.15 -9.15 -41.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.508 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds