Wall clock time and date at job start Mon Mar 30 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47327 * 2 1 4 4 H 1.09012 * 109.47080 * 305.00045 * 3 2 1 5 5 N 1.46504 * 109.47111 * 64.99467 * 3 2 1 6 6 C 1.34778 * 119.99836 * 204.81935 * 5 3 2 7 7 O 1.21281 * 120.00214 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99573 * 180.02562 * 6 5 3 9 9 H 1.08996 * 109.47388 * 319.99909 * 8 6 5 10 10 N 1.46909 * 109.46861 * 200.00433 * 8 6 5 11 11 C 1.52997 * 109.47344 * 80.00591 * 8 6 5 12 12 C 1.53000 * 109.47396 * 184.99751 * 11 8 6 13 13 C 1.52998 * 109.47078 * 179.97438 * 12 11 8 14 14 C 1.50695 * 109.46965 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00390 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00074 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99992 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46674 * 59.99651 * 18 16 14 20 20 H 1.48495 * 109.47573 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46958 * 300.00285 * 18 16 14 22 22 C 1.52994 * 109.47558 * 185.00102 * 3 2 1 23 23 C 1.53000 * 117.50323 * 133.28929 * 22 3 2 24 24 C 1.52999 * 117.50366 * 64.62704 * 22 3 2 25 25 H 1.08999 * 109.47282 * 299.99873 * 1 2 3 26 26 H 1.09002 * 109.46711 * 60.00433 * 1 2 3 27 27 H 1.09002 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46960 * 239.99720 * 2 1 3 29 29 H 1.09007 * 109.47121 * 119.99824 * 2 1 3 30 30 H 0.96998 * 119.99623 * 24.83017 * 5 3 2 31 31 H 1.00897 * 110.99534 * 299.99822 * 10 8 6 32 32 H 1.00894 * 111.00062 * 63.95513 * 10 8 6 33 33 H 1.08998 * 109.47209 * 64.99589 * 11 8 6 34 34 H 1.09003 * 109.46786 * 304.99810 * 11 8 6 35 35 H 1.09006 * 109.46783 * 59.99791 * 12 11 8 36 36 H 1.08997 * 109.47173 * 300.00253 * 12 11 8 37 37 H 1.08997 * 109.47690 * 300.00383 * 13 12 11 38 38 H 1.08998 * 109.47003 * 60.00158 * 13 12 11 39 39 H 0.97006 * 120.00320 * 180.02562 * 17 16 14 40 40 H 1.09004 * 115.54702 * 278.96018 * 22 3 2 41 41 H 1.08999 * 117.49941 * 0.02562 * 23 22 3 42 42 H 1.08998 * 117.49908 * 145.02002 * 23 22 3 43 43 H 1.09000 * 117.50323 * 214.98599 * 24 22 3 44 44 H 1.09004 * 117.49747 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8419 5 7 1.6523 2.0974 1.2518 6 6 1.5291 3.4387 1.3004 7 8 1.7387 4.1033 0.3078 8 6 1.1309 4.1125 2.5882 9 1 0.3616 3.5213 3.0849 10 7 0.6062 5.4535 2.2973 11 6 2.3528 4.2300 3.5014 12 6 1.9248 4.7997 4.8554 13 6 3.1467 4.9166 5.7688 14 6 2.7250 5.4770 7.1025 15 1 1.6890 5.7247 7.2811 16 6 3.6617 5.6737 8.0949 17 7 4.9233 5.3726 7.8774 18 14 3.1392 6.3691 9.7481 19 1 2.1399 5.4649 10.3719 20 1 4.3252 6.4837 10.6343 21 1 2.5368 7.7123 9.5520 22 6 3.5648 1.4443 -0.1257 23 6 4.1888 2.4040 -1.1408 24 6 4.1675 0.8995 -1.4222 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.4845 1.5658 2.0456 31 1 1.3012 6.0215 1.8364 32 1 -0.2389 5.4000 1.7488 33 1 3.0862 4.8937 3.0435 34 1 2.7949 3.2441 3.6454 35 1 1.1914 4.1359 5.3134 36 1 1.4826 5.7855 4.7115 37 1 3.5885 3.9306 5.9127 38 1 3.8803 5.5801 5.3110 39 1 5.5823 5.5106 8.5757 40 1 4.1129 1.2635 0.7989 41 1 3.5131 3.0344 -1.7188 42 1 5.1477 2.8543 -0.8842 43 1 5.1123 0.3607 -1.3506 44 1 3.4776 0.5401 -2.1858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691603295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:55 Heat of formation + Delta-G solvation = -69.100183 kcal Electronic energy + Delta-G solvation = -20673.790899 eV Core-core repulsion = 17624.497994 eV Total energy + Delta-G solvation = -3049.292905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20949 -38.92156 -37.05167 -35.84415 -35.21211 -33.16550 -33.09660 -29.62965 -28.10650 -26.35333 -24.14679 -23.45173 -22.67560 -21.77473 -21.26493 -21.19131 -18.43584 -18.23495 -17.72577 -17.08204 -16.47112 -16.27025 -16.06006 -15.52006 -15.14735 -14.97137 -14.75771 -14.46194 -14.23169 -13.75653 -13.62811 -13.38927 -13.09815 -12.82695 -12.48468 -12.46675 -12.39839 -12.28726 -12.26559 -12.15310 -11.83820 -11.47431 -11.41930 -11.34264 -11.22555 -10.94881 -10.86683 -10.51049 -10.06256 -9.64684 -8.16523 -6.27235 1.41621 1.45112 1.52721 1.56552 2.19746 2.43996 2.87233 3.16403 3.54464 3.64378 3.80705 3.91645 4.03987 4.10672 4.13502 4.18514 4.24634 4.31826 4.48934 4.53906 4.69626 4.73766 4.81889 4.89521 4.93680 4.98585 5.11040 5.12200 5.14740 5.20762 5.24333 5.28039 5.34872 5.40100 5.57928 5.61053 5.84783 5.94017 6.06226 6.30919 6.46422 6.56925 6.90412 7.22810 7.41851 8.95085 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024035 B = 0.003425 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.695468 B = 8174.146614 C = 8433.588960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.176 3.824 4 H 0.067 0.933 5 N -0.709 5.709 6 C 0.486 3.514 7 O -0.577 6.577 8 C 0.086 3.914 9 H 0.121 0.879 10 N -0.819 5.819 11 C -0.092 4.092 12 C -0.083 4.083 13 C 0.022 3.978 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.936 5.936 18 Si 0.964 3.036 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.174 4.174 23 C -0.188 4.188 24 C -0.151 4.151 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.413 0.587 31 H 0.344 0.656 32 H 0.348 0.652 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.055 0.945 37 H -0.008 1.008 38 H -0.017 1.017 39 H 0.262 0.738 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -13.175 -17.962 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.071 3.929 4 H 0.085 0.915 5 N -0.361 5.361 6 C 0.272 3.728 7 O -0.457 6.457 8 C -0.029 4.029 9 H 0.139 0.861 10 N -0.348 5.348 11 C -0.130 4.130 12 C -0.121 4.121 13 C -0.015 4.015 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.576 5.576 18 Si 0.788 3.212 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.193 4.193 23 C -0.226 4.226 24 C -0.189 4.189 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.249 0.751 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.006 -12.625 -17.793 23.240 hybrid contribution 0.527 0.208 0.214 0.606 sum -7.479 -12.416 -17.579 22.784 Atomic orbital electron populations 1.21777 0.95015 1.02440 1.01713 1.21752 0.96390 0.93373 1.04356 1.20574 0.91243 0.94305 0.86769 0.91493 1.46117 1.69138 1.06620 1.14192 1.22333 0.75879 0.83086 0.91546 1.90649 1.51886 1.64966 1.38190 1.21609 0.98828 0.91105 0.91396 0.86102 1.59040 1.10138 1.10860 1.54723 1.21427 0.95314 1.01193 0.95096 1.21280 0.97451 1.00491 0.92888 1.19049 0.93957 0.94608 0.93913 1.21715 0.94701 1.42222 0.99277 0.92163 1.25993 0.94898 0.96013 1.03071 1.70098 1.02459 1.49888 1.35172 0.85520 0.77755 0.79227 0.78667 1.18888 1.20945 1.19372 1.22727 0.95787 1.05896 0.94923 1.22898 1.02112 0.93660 1.03883 1.23014 1.03035 0.95083 0.97737 0.92811 0.93414 0.91154 0.89206 0.90186 0.75082 0.84220 0.83822 0.93888 0.91050 0.92558 0.92623 0.98969 0.99908 0.92889 0.88325 0.90045 0.89847 0.87541 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.80 71.98 0.71 -1.08 16 2 C -0.12 -1.46 5.42 30.59 0.17 -1.29 16 3 C 0.18 3.21 2.15 44.99 0.10 3.31 16 4 H 0.07 1.50 7.38 -2.38 -0.02 1.49 16 5 N -0.71 -13.89 4.53 -442.53 -2.01 -15.89 16 6 C 0.49 12.58 7.03 87.66 0.62 13.19 16 7 O -0.58 -18.68 15.92 -3.03 -0.05 -18.73 16 8 C 0.09 2.24 3.15 44.17 0.14 2.38 16 9 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 10 N -0.82 -21.99 8.44 -171.79 -1.45 -23.44 16 11 C -0.09 -3.03 4.84 30.59 0.15 -2.88 16 12 C -0.08 -3.41 5.04 30.59 0.15 -3.26 16 13 C 0.02 1.17 4.97 29.85 0.15 1.32 16 14 C -0.54 -31.38 9.11 25.60 0.23 -31.14 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 18 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C -0.17 -3.43 5.36 -10.80 -0.06 -3.48 16 23 C -0.19 -4.17 10.18 30.62 0.31 -3.86 16 24 C -0.15 -2.37 9.73 30.62 0.30 -2.07 16 25 H 0.05 0.67 7.75 -2.39 -0.02 0.65 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.90 7.46 -2.39 -0.02 0.88 16 29 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.41 6.26 8.60 -92.71 -0.80 5.47 16 31 H 0.34 9.99 8.58 -89.70 -0.77 9.22 16 32 H 0.35 7.96 9.06 -89.70 -0.81 7.14 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.05 2.35 7.75 -2.39 -0.02 2.34 16 37 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 40 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 41 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.11 1.37 7.88 -2.38 -0.02 1.35 16 Total: -1.00 -69.99 361.58 0.83 -69.16 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -1.40 Total: 28.25 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.42 Total: -28.55 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.17 Total: -97.01 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.99 0.83 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691603295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.058 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds