Wall clock time and date at job start Mon Mar 30 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47495 * 2 1 4 4 H 1.09004 * 109.46757 * 305.00070 * 3 2 1 5 5 N 1.46501 * 109.47202 * 64.99522 * 3 2 1 6 6 C 1.34777 * 119.99990 * 208.69461 * 5 3 2 7 7 O 1.21282 * 120.00110 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99699 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47173 * 40.00599 * 8 6 5 10 10 N 1.46907 * 109.47156 * 160.00083 * 8 6 5 11 11 C 1.52996 * 109.47699 * 280.00227 * 8 6 5 12 12 C 1.52995 * 109.47547 * 175.00123 * 11 8 6 13 13 C 1.50697 * 109.47211 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00304 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00213 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00433 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47336 * 120.00206 * 17 15 13 20 20 H 1.48500 * 109.47390 * 240.00770 * 17 15 13 21 21 C 1.52999 * 109.47593 * 184.99860 * 3 2 1 22 22 C 1.53771 * 113.62018 * 156.53362 * 21 3 2 23 23 C 1.53780 * 87.08420 * 220.02278 * 22 21 3 24 24 C 1.53778 * 113.61233 * 59.03282 * 21 3 2 25 25 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47224 * 300.00172 * 1 2 3 27 27 H 1.09004 * 109.46471 * 60.00228 * 1 2 3 28 28 H 1.09004 * 109.47228 * 239.99502 * 2 1 3 29 29 H 1.09006 * 109.46587 * 120.00303 * 2 1 3 30 30 H 0.97004 * 119.99713 * 28.69706 * 5 3 2 31 31 H 1.00904 * 110.99911 * 59.99870 * 10 8 6 32 32 H 1.00890 * 111.00387 * 183.95261 * 10 8 6 33 33 H 1.09008 * 109.47171 * 295.00434 * 11 8 6 34 34 H 1.08998 * 109.47108 * 54.99773 * 11 8 6 35 35 H 1.09000 * 109.47144 * 299.99970 * 12 11 8 36 36 H 1.08996 * 109.47115 * 60.00237 * 12 11 8 37 37 H 0.96998 * 120.00620 * 179.97438 * 16 15 13 38 38 H 1.09003 * 112.90289 * 287.78882 * 21 3 2 39 39 H 1.09005 * 113.61389 * 334.56532 * 22 21 3 40 40 H 1.08999 * 113.61720 * 105.46319 * 22 21 3 41 41 H 1.09004 * 113.60881 * 270.88108 * 23 22 21 42 42 H 1.08998 * 113.69463 * 139.99323 * 23 22 21 43 43 H 1.08998 * 113.62046 * 254.53161 * 24 21 3 44 44 H 1.09000 * 113.61424 * 25.43743 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 7 1.6525 2.0975 1.2518 6 6 1.4532 3.4301 1.2814 7 8 1.5942 4.0869 0.2716 8 6 1.0539 4.1038 2.5689 9 1 1.6085 3.6626 3.3970 10 7 1.3577 5.5387 2.4855 11 6 -0.4463 3.9128 2.8007 12 6 -0.8288 4.4876 4.1660 13 6 -2.3065 4.3000 4.3939 14 1 -2.9124 3.8185 3.6406 15 6 -2.8851 4.7420 5.5648 16 7 -2.1474 5.3278 6.4825 17 14 -4.7168 4.5088 5.8477 18 1 -5.3164 3.8272 4.6724 19 1 -4.9286 3.6799 7.0614 20 1 -5.3614 5.8335 6.0343 21 6 3.5649 1.4443 -0.1257 22 6 4.1344 2.7531 -0.6976 23 6 5.1193 1.8835 -1.4967 24 6 4.0786 0.7554 -1.4009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5393 1.5720 2.0593 31 1 0.8552 5.9710 1.7247 32 1 1.1589 6.0018 3.3595 33 1 -1.0035 4.4302 2.0196 34 1 -0.6856 2.8497 2.7740 35 1 -0.2717 3.9701 4.9470 36 1 -0.5895 5.5506 4.1926 37 1 -2.5544 5.6392 7.3060 38 1 4.0658 1.1104 0.7830 39 1 3.4285 3.3000 -1.3229 40 1 4.6156 3.3835 0.0501 41 1 6.0453 1.6698 -0.9627 42 1 5.2890 2.2359 -2.5140 43 1 4.5151 -0.2271 -1.2210 44 1 3.3576 0.7561 -2.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691606962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:01 Heat of formation + Delta-G solvation = -70.377719 kcal Electronic energy + Delta-G solvation = -21118.644850 eV Core-core repulsion = 18069.296547 eV Total energy + Delta-G solvation = -3049.348303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.25025 -39.59614 -37.07900 -36.30802 -34.82725 -33.14004 -31.67853 -29.20838 -27.84113 -26.48668 -25.62802 -24.20326 -22.56829 -21.71516 -21.17594 -20.26752 -18.83340 -18.06139 -17.40616 -16.58025 -16.40461 -16.13358 -15.96281 -15.53439 -15.42209 -14.83385 -14.56041 -14.51074 -14.04811 -13.91653 -13.47388 -13.43744 -13.28556 -12.96116 -12.79846 -12.67090 -12.49649 -12.44333 -12.14965 -11.80959 -11.74869 -11.68402 -11.56062 -11.31123 -11.28386 -10.99597 -10.61411 -10.56816 -9.85469 -9.61188 -8.22046 -6.32444 1.38143 1.39689 1.51541 1.72231 2.23378 2.39725 3.11576 3.55568 3.74602 3.82375 3.83271 3.94944 4.01708 4.14862 4.22701 4.24690 4.27152 4.33028 4.56111 4.67225 4.80044 4.84146 4.87677 4.92094 4.95854 4.97747 5.08852 5.10206 5.12568 5.15876 5.22631 5.36554 5.42757 5.46406 5.59032 5.65216 5.73883 5.80325 6.09296 6.20931 6.48011 6.64255 6.83260 7.35832 7.36787 8.88932 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028177 B = 0.003908 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.496775 B = 7163.454771 C = 7866.135180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.154 3.846 4 H 0.064 0.936 5 N -0.713 5.713 6 C 0.528 3.472 7 O -0.565 6.565 8 C 0.080 3.920 9 H 0.104 0.896 10 N -0.830 5.830 11 C -0.118 4.118 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.054 0.946 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.280 1.280 21 C -0.119 4.119 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.119 4.119 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.409 0.591 31 H 0.343 0.657 32 H 0.351 0.649 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -12.820 -13.216 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.082 0.918 5 N -0.365 5.365 6 C 0.314 3.686 7 O -0.443 6.443 8 C -0.036 4.036 9 H 0.122 0.878 10 N -0.361 5.361 11 C -0.158 4.158 12 C -0.007 4.007 13 C -0.582 4.582 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.567 5.567 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.138 4.138 22 C -0.173 4.173 23 C -0.177 4.177 24 C -0.157 4.157 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.245 0.755 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.129 -12.511 -13.917 22.300 hybrid contribution -2.126 0.435 1.148 2.455 sum 10.003 -12.076 -12.768 20.222 Atomic orbital electron populations 1.21787 0.96020 1.02143 1.01298 1.21774 0.95677 0.93940 1.04449 1.21119 0.93811 0.93835 0.86266 0.91758 1.45972 1.70018 1.06981 1.13565 1.20576 0.75378 0.82738 0.89894 1.90605 1.52364 1.64930 1.36417 1.21415 0.95654 0.91050 0.95444 0.87765 1.58760 1.65306 1.01677 1.10313 1.22102 0.93781 1.01443 0.98501 1.18968 0.95083 0.95068 0.91615 1.21644 0.95287 1.38555 1.02665 0.92758 1.25872 1.02797 0.94797 0.95898 1.70066 1.37461 1.40686 1.08478 0.85485 0.79829 0.77952 0.78302 1.18974 1.20207 1.20579 1.22972 0.94484 0.97203 0.99156 1.22836 0.98837 0.96304 0.99333 1.22848 0.97489 0.96977 1.00420 1.22832 0.98026 0.98302 0.96518 0.91199 0.93743 0.93725 0.88719 0.89969 0.75483 0.84434 0.83477 0.93967 0.91649 0.98022 0.98063 0.92733 0.88677 0.91850 0.94044 0.89554 0.91297 0.89502 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.80 71.98 0.71 -2.07 16 2 C -0.12 -1.82 5.37 30.59 0.16 -1.66 16 3 C 0.15 3.23 1.88 44.99 0.08 3.31 16 4 H 0.06 1.70 7.24 -2.39 -0.02 1.68 16 5 N -0.71 -17.31 4.50 -442.54 -1.99 -19.30 16 6 C 0.53 16.98 7.07 87.66 0.62 17.60 16 7 O -0.57 -21.52 14.52 -3.04 -0.04 -21.56 16 8 C 0.08 2.70 3.21 44.17 0.14 2.84 16 9 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 10 N -0.83 -29.25 8.94 -171.79 -1.54 -30.79 16 11 C -0.12 -4.65 4.78 30.59 0.15 -4.51 16 12 C 0.03 1.47 4.74 29.85 0.14 1.61 16 13 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.00 0.27 5.46 84.65 0.46 0.73 16 16 N -0.93 -54.51 13.29 21.45 0.28 -54.23 16 17 Si 0.96 43.46 29.54 68.60 2.03 45.49 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C -0.12 -2.26 3.46 -10.27 -0.04 -2.29 16 22 C -0.14 -3.21 6.85 31.12 0.21 -3.00 16 23 C -0.14 -2.38 8.08 31.12 0.25 -2.13 16 24 C -0.12 -1.73 6.55 31.12 0.20 -1.52 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.93 7.75 -2.39 -0.02 0.92 16 27 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.09 1.12 7.23 -2.38 -0.02 1.11 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.41 8.29 8.64 -92.71 -0.80 7.49 16 31 H 0.34 12.37 8.58 -89.69 -0.77 11.60 16 32 H 0.35 12.57 7.55 -89.70 -0.68 11.89 16 33 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.00 0.06 6.87 -2.39 -0.02 0.04 16 37 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.82 7.42 -2.38 -0.02 1.80 16 40 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.19 8.07 -2.39 -0.02 1.17 16 Total: -1.00 -65.23 351.57 0.81 -64.42 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -1.26 Total: 36.79 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 3.33 Total: -20.82 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -3.24 Total: -104.32 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.04 Total: -21.56 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.23 0.81 -64.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691606962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.960 kcal (2) G-P(sol) polarization free energy of solvation -65.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds