Wall clock time and date at job start Mon Mar 30 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 H 1.08997 * 109.47188 * 304.99785 * 3 2 1 5 5 N 1.46503 * 109.47021 * 64.99604 * 3 2 1 6 6 C 1.34780 * 119.99787 * 208.69934 * 5 3 2 7 7 O 1.21272 * 120.00109 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99881 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.46910 * 320.00700 * 8 6 5 10 10 N 1.46890 * 109.47281 * 200.00203 * 8 6 5 11 11 C 1.53005 * 109.46928 * 79.99771 * 8 6 5 12 12 C 1.52995 * 109.46966 * 184.99949 * 11 8 6 13 13 C 1.50698 * 109.47256 * 180.02562 * 12 11 8 14 14 H 1.07998 * 119.99881 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00227 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46892 * 60.00221 * 17 15 13 19 19 H 1.48497 * 109.46890 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46629 * 300.00211 * 17 15 13 21 21 C 1.53001 * 109.47152 * 184.99487 * 3 2 1 22 22 C 1.53781 * 113.61158 * 156.53354 * 21 3 2 23 23 C 1.53777 * 87.08091 * 220.02052 * 22 21 3 24 24 C 1.53771 * 87.08031 * 25.43727 * 23 22 21 25 25 H 1.09001 * 109.46929 * 60.00525 * 1 2 3 26 26 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47680 * 300.00293 * 1 2 3 28 28 H 1.08996 * 109.47680 * 239.99707 * 2 1 3 29 29 H 1.09001 * 109.46929 * 119.99475 * 2 1 3 30 30 H 0.96998 * 119.99948 * 28.70107 * 5 3 2 31 31 H 1.00906 * 111.00062 * 299.99880 * 10 8 6 32 32 H 1.00898 * 111.00407 * 63.95104 * 10 8 6 33 33 H 1.08997 * 109.47324 * 305.00255 * 11 8 6 34 34 H 1.09002 * 109.46585 * 65.00258 * 11 8 6 35 35 H 1.09005 * 109.47630 * 300.00297 * 12 11 8 36 36 H 1.09001 * 109.47658 * 60.00393 * 12 11 8 37 37 H 0.96995 * 120.00123 * 179.97438 * 16 15 13 38 38 H 1.08991 * 112.85191 * 287.84320 * 21 3 2 39 39 H 1.09001 * 113.61963 * 334.57392 * 22 21 3 40 40 H 1.09008 * 113.61243 * 105.47430 * 22 21 3 41 41 H 1.08997 * 113.61659 * 270.88357 * 23 22 21 42 42 H 1.09005 * 113.68840 * 139.99594 * 23 22 21 43 43 H 1.09005 * 113.61347 * 220.01364 * 24 23 22 44 44 H 1.08998 * 113.61688 * 89.11465 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6523 2.0975 1.2518 6 6 1.4528 3.4301 1.2814 7 8 1.5937 4.0869 0.2717 8 6 1.0546 4.1040 2.5692 9 1 0.3361 3.4788 3.0993 10 7 0.4445 5.4067 2.2718 11 6 2.2943 4.3087 3.4422 12 6 1.8744 4.8780 4.7988 13 6 3.0954 5.0802 5.6585 14 1 4.0733 4.8282 5.2754 15 6 2.9644 5.5879 6.9337 16 7 1.7737 5.8952 7.4000 17 14 4.4781 5.8391 7.9991 18 1 5.4033 6.7876 7.3287 19 1 4.0705 6.3916 9.3158 20 1 5.1637 4.5371 8.1998 21 6 3.5648 1.4444 -0.1256 22 6 4.1341 2.7534 -0.6976 23 6 5.1192 1.8838 -1.4965 24 6 4.0787 0.7557 -1.4010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5392 1.5721 2.0593 31 1 1.0913 6.0052 1.7801 32 1 -0.4120 5.2944 1.7505 33 1 2.7970 3.3528 3.5892 34 1 2.9739 5.0048 2.9506 35 1 1.3716 5.8340 4.6518 36 1 1.1947 4.1820 5.2904 37 1 1.6815 6.2520 8.2972 38 1 4.0648 1.1095 0.7832 39 1 3.4283 3.3003 -1.3227 40 1 4.6155 3.3838 0.0502 41 1 6.0452 1.6702 -0.9627 42 1 5.2889 2.2363 -2.5139 43 1 4.5151 -0.2268 -1.2211 44 1 3.3576 0.7564 -2.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691606974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:07 Heat of formation + Delta-G solvation = -49.685849 kcal Electronic energy + Delta-G solvation = -21182.416512 eV Core-core repulsion = 18133.965476 eV Total energy + Delta-G solvation = -3048.451036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23736 -38.62447 -35.63377 -35.01493 -32.77390 -32.25091 -30.06276 -28.20097 -26.23191 -25.64017 -23.91454 -23.23358 -21.13914 -20.58111 -19.84911 -19.40436 -17.03320 -16.54477 -16.08178 -15.62210 -15.35570 -15.25627 -14.49230 -14.24778 -14.04096 -13.73047 -13.40502 -13.24527 -12.70723 -12.47523 -12.29313 -12.05436 -11.98089 -11.70777 -11.56585 -11.40286 -11.04834 -10.86902 -10.76451 -10.64643 -10.54888 -10.47265 -10.18931 -10.01932 -9.76569 -9.33898 -8.99162 -8.85162 -8.31648 -8.16198 -5.92463 -3.94585 2.87167 3.35291 3.36688 3.41250 3.43763 4.36098 4.51020 4.61088 4.63219 4.77310 4.90347 4.94943 4.98239 5.04977 5.18096 5.38154 5.42975 5.51898 5.53479 5.57647 5.65970 5.71832 5.73369 5.75336 5.79948 5.88227 5.95332 6.05728 6.09449 6.20490 6.44582 6.46950 6.63633 6.70002 7.11680 7.43820 7.69375 7.77542 7.83769 7.98074 8.14928 8.42944 8.50167 9.13298 9.68409 11.18438 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.004249 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.066923 B = 6587.631057 C = 7114.315411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.152 3.848 4 H 0.086 0.914 5 N -0.724 5.724 6 C 0.485 3.515 7 O -0.552 6.552 8 C 0.078 3.922 9 H 0.095 0.905 10 N -0.807 5.807 11 C -0.093 4.093 12 C 0.031 3.969 13 C -0.522 4.522 14 H 0.051 0.949 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.131 4.131 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.400 0.600 31 H 0.347 0.653 32 H 0.333 0.667 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.012 0.988 37 H 0.260 0.740 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -12.809 -16.878 21.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.047 3.953 4 H 0.104 0.896 5 N -0.376 5.376 6 C 0.271 3.729 7 O -0.429 6.429 8 C -0.038 4.038 9 H 0.113 0.887 10 N -0.335 5.335 11 C -0.132 4.132 12 C -0.006 4.006 13 C -0.561 4.561 14 H 0.069 0.931 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.142 4.142 22 C -0.163 4.163 23 C -0.183 4.183 24 C -0.169 4.169 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.235 0.765 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.243 -12.148 -16.643 20.606 hybrid contribution 0.983 -0.445 0.073 1.081 sum 0.739 -12.593 -16.570 20.825 Atomic orbital electron populations 1.21764 0.95434 1.01507 1.02235 1.21807 0.96334 0.95802 1.02937 1.21027 0.93352 0.92782 0.88125 0.89564 1.46216 1.70743 1.08379 1.12232 1.22645 0.75622 0.82108 0.92566 1.90617 1.52004 1.64111 1.36187 1.21818 0.99724 0.90866 0.91421 0.88713 1.58994 1.08870 1.11515 1.54131 1.21625 0.92979 1.00521 0.98034 1.19010 0.96208 0.97136 0.88232 1.21244 0.93506 1.42493 0.98843 0.93096 1.24984 0.95624 0.95688 0.97965 1.69962 1.21909 1.44131 1.17212 0.86722 0.83495 0.78406 0.79723 1.20322 1.21324 1.20392 1.22979 0.95242 0.97950 0.98032 1.22871 0.98198 0.95834 0.99400 1.22843 0.97492 0.97493 1.00504 1.22872 0.98572 0.97803 0.97666 0.92851 0.92688 0.92391 0.90601 0.91405 0.76546 0.83891 0.85569 0.92957 0.92962 0.94709 0.96948 0.93057 0.89196 0.89531 0.91876 0.90476 0.91760 0.91657 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.80 37.16 0.36 -0.89 16 2 C -0.13 -1.08 5.37 -26.73 -0.14 -1.22 16 3 C 0.15 1.63 1.88 -67.93 -0.13 1.50 16 4 H 0.09 1.09 7.24 -51.93 -0.38 0.71 16 5 N -0.72 -8.73 4.50 -53.80 -0.24 -8.97 16 6 C 0.48 7.37 7.06 -10.98 -0.08 7.29 16 7 O -0.55 -9.65 14.52 5.56 0.08 -9.57 16 8 C 0.08 1.29 3.15 -68.87 -0.22 1.07 16 9 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 10 N -0.81 -13.66 8.44 -5.66 -0.05 -13.70 16 11 C -0.09 -1.88 4.78 -26.73 -0.13 -2.01 16 12 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 13 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.12 -1.32 3.46 -89.81 -0.31 -1.63 16 22 C -0.13 -1.56 6.86 -25.92 -0.18 -1.74 16 23 C -0.15 -1.45 8.08 -25.93 -0.21 -1.66 16 24 C -0.13 -1.17 6.55 -25.92 -0.17 -1.34 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.52 7.75 -51.93 -0.40 0.12 16 28 H 0.08 0.55 7.23 -51.93 -0.38 0.18 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.40 4.24 8.64 -40.82 -0.35 3.89 16 31 H 0.35 5.98 8.58 -39.29 -0.34 5.65 16 32 H 0.33 4.90 9.06 -39.29 -0.36 4.54 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.20 7.42 -51.93 -0.39 0.82 16 40 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -31.35 353.53 -8.93 -40.28 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.02 Total: 9.61 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -1.74 Total: -13.49 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 0.45 Total: -48.95 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.35 -8.93 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691606974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.409 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds