Wall clock time and date at job start Mon Mar 30 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47079 * 2 1 4 4 H 1.08997 * 109.47188 * 304.99785 * 3 2 1 5 5 N 1.46503 * 109.47021 * 64.99604 * 3 2 1 6 6 C 1.34780 * 119.99787 * 208.69934 * 5 3 2 7 7 O 1.21272 * 120.00109 * 0.02562 * 6 5 3 8 8 C 1.50701 * 119.99881 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.46910 * 320.00700 * 8 6 5 10 10 N 1.46890 * 109.47281 * 200.00203 * 8 6 5 11 11 C 1.53005 * 109.46928 * 79.99771 * 8 6 5 12 12 C 1.52995 * 109.46966 * 184.99949 * 11 8 6 13 13 C 1.50698 * 109.47256 * 180.02562 * 12 11 8 14 14 H 1.07998 * 119.99881 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00227 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99967 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00023 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46892 * 60.00221 * 17 15 13 19 19 H 1.48497 * 109.46890 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46629 * 300.00211 * 17 15 13 21 21 C 1.53001 * 109.47152 * 184.99487 * 3 2 1 22 22 C 1.53781 * 113.61158 * 156.53354 * 21 3 2 23 23 C 1.53777 * 87.08091 * 220.02052 * 22 21 3 24 24 C 1.53771 * 87.08031 * 25.43727 * 23 22 21 25 25 H 1.09001 * 109.46929 * 60.00525 * 1 2 3 26 26 H 1.09004 * 109.46876 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47680 * 300.00293 * 1 2 3 28 28 H 1.08996 * 109.47680 * 239.99707 * 2 1 3 29 29 H 1.09001 * 109.46929 * 119.99475 * 2 1 3 30 30 H 0.96998 * 119.99948 * 28.70107 * 5 3 2 31 31 H 1.00906 * 111.00062 * 299.99880 * 10 8 6 32 32 H 1.00898 * 111.00407 * 63.95104 * 10 8 6 33 33 H 1.08997 * 109.47324 * 305.00255 * 11 8 6 34 34 H 1.09002 * 109.46585 * 65.00258 * 11 8 6 35 35 H 1.09005 * 109.47630 * 300.00297 * 12 11 8 36 36 H 1.09001 * 109.47658 * 60.00393 * 12 11 8 37 37 H 0.96995 * 120.00123 * 179.97438 * 16 15 13 38 38 H 1.08991 * 112.85191 * 287.84320 * 21 3 2 39 39 H 1.09001 * 113.61963 * 334.57392 * 22 21 3 40 40 H 1.09008 * 113.61243 * 105.47430 * 22 21 3 41 41 H 1.08997 * 113.61659 * 270.88357 * 23 22 21 42 42 H 1.09005 * 113.68840 * 139.99594 * 23 22 21 43 43 H 1.09005 * 113.61347 * 220.01364 * 24 23 22 44 44 H 1.08998 * 113.61688 * 89.11465 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6523 2.0975 1.2518 6 6 1.4528 3.4301 1.2814 7 8 1.5937 4.0869 0.2717 8 6 1.0546 4.1040 2.5692 9 1 0.3361 3.4788 3.0993 10 7 0.4445 5.4067 2.2718 11 6 2.2943 4.3087 3.4422 12 6 1.8744 4.8780 4.7988 13 6 3.0954 5.0802 5.6585 14 1 4.0733 4.8282 5.2754 15 6 2.9644 5.5879 6.9337 16 7 1.7737 5.8952 7.4000 17 14 4.4781 5.8391 7.9991 18 1 5.4033 6.7876 7.3287 19 1 4.0705 6.3916 9.3158 20 1 5.1637 4.5371 8.1998 21 6 3.5648 1.4444 -0.1256 22 6 4.1341 2.7534 -0.6976 23 6 5.1192 1.8838 -1.4965 24 6 4.0787 0.7557 -1.4010 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5392 1.5721 2.0593 31 1 1.0913 6.0052 1.7801 32 1 -0.4120 5.2944 1.7505 33 1 2.7970 3.3528 3.5892 34 1 2.9739 5.0048 2.9506 35 1 1.3716 5.8340 4.6518 36 1 1.1947 4.1820 5.2904 37 1 1.6815 6.2520 8.2972 38 1 4.0648 1.1095 0.7832 39 1 3.4283 3.3003 -1.3227 40 1 4.6155 3.3838 0.0502 41 1 6.0452 1.6702 -0.9627 42 1 5.2889 2.2363 -2.5139 43 1 4.5151 -0.2268 -1.2211 44 1 3.3576 0.7564 -2.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691606974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:06 Heat of formation + Delta-G solvation = -70.497736 kcal Electronic energy + Delta-G solvation = -21183.318983 eV Core-core repulsion = 18133.965476 eV Total energy + Delta-G solvation = -3049.353507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33135 -39.65659 -36.85457 -36.33439 -34.79290 -33.16750 -31.90952 -29.15926 -27.87674 -26.53202 -25.44345 -24.19833 -22.49518 -21.76729 -21.17603 -20.33378 -18.61729 -17.99178 -17.48483 -16.93966 -16.48198 -16.36370 -16.15697 -15.50196 -15.09273 -14.93600 -14.67914 -14.25908 -14.05915 -13.77826 -13.49795 -13.43007 -13.32818 -12.82395 -12.77782 -12.53778 -12.47576 -12.27839 -12.14617 -11.80315 -11.71774 -11.60418 -11.59692 -11.34750 -11.21696 -11.03864 -10.93490 -10.48265 -9.88439 -9.56874 -8.13525 -6.23937 1.41467 1.44265 1.51900 1.61736 2.27625 2.44890 3.19359 3.52380 3.62501 3.77035 3.79260 3.93762 4.00741 4.13413 4.20123 4.21737 4.30243 4.34775 4.53713 4.77147 4.79001 4.84010 4.88439 4.90538 4.93871 4.97084 5.06118 5.11314 5.11701 5.19605 5.26181 5.32568 5.40722 5.55074 5.56867 5.69357 5.84855 5.98828 6.12871 6.30795 6.50644 6.60266 6.94484 7.26500 7.44117 8.97534 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.004249 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.066923 B = 6587.631057 C = 7114.315411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.153 3.847 4 H 0.068 0.932 5 N -0.710 5.710 6 C 0.490 3.510 7 O -0.575 6.575 8 C 0.084 3.916 9 H 0.106 0.894 10 N -0.820 5.820 11 C -0.078 4.078 12 C 0.040 3.960 13 C -0.545 4.545 14 H 0.054 0.946 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.122 4.122 22 C -0.137 4.137 23 C -0.141 4.141 24 C -0.116 4.116 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.410 0.590 31 H 0.344 0.656 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.004 0.996 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -14.930 -17.402 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.049 3.951 4 H 0.086 0.914 5 N -0.362 5.362 6 C 0.275 3.725 7 O -0.455 6.455 8 C -0.032 4.032 9 H 0.124 0.876 10 N -0.348 5.348 11 C -0.117 4.117 12 C 0.002 3.998 13 C -0.583 4.583 14 H 0.072 0.928 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.783 3.217 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.141 4.141 22 C -0.174 4.174 23 C -0.179 4.179 24 C -0.154 4.154 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.246 0.754 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.770 -14.312 -17.176 22.370 hybrid contribution 0.635 0.236 0.225 0.714 sum 1.404 -14.076 -16.951 22.078 Atomic orbital electron populations 1.21765 0.95469 1.02253 1.01457 1.21780 0.96190 0.93772 1.04304 1.21128 0.93446 0.94064 0.86511 0.91385 1.46133 1.69280 1.07358 1.13397 1.22178 0.75759 0.83072 0.91448 1.90617 1.53221 1.64934 1.36726 1.21612 0.98365 0.91289 0.91891 0.87602 1.58966 1.09495 1.11779 1.54594 1.21339 0.94328 1.00305 0.95678 1.18823 0.94866 0.95402 0.90678 1.21696 0.94443 1.42496 0.99634 0.92755 1.25889 0.98831 0.95262 0.99496 1.70096 1.24239 1.44921 1.17724 0.85608 0.79518 0.78836 0.77706 1.19675 1.20849 1.19051 1.22984 0.94998 0.97124 0.99038 1.22852 0.98946 0.96362 0.99284 1.22843 0.97465 0.97119 1.00425 1.22817 0.97959 0.98156 0.96475 0.93512 0.91189 0.93334 0.88895 0.90287 0.75410 0.84269 0.84147 0.91663 0.94284 0.97723 0.98794 0.92916 0.89243 0.91458 0.94530 0.89936 0.91102 0.89637 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.80 71.98 0.71 -1.47 16 2 C -0.12 -1.67 5.37 30.59 0.16 -1.51 16 3 C 0.15 3.05 1.88 44.99 0.08 3.13 16 4 H 0.07 1.66 7.24 -2.39 -0.02 1.64 16 5 N -0.71 -16.35 4.50 -442.53 -1.99 -18.34 16 6 C 0.49 14.79 7.06 87.66 0.62 15.41 16 7 O -0.58 -20.34 14.52 -3.00 -0.04 -20.38 16 8 C 0.08 2.81 3.15 44.17 0.14 2.95 16 9 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 10 N -0.82 -28.21 8.44 -171.81 -1.45 -29.66 16 11 C -0.08 -3.18 4.78 30.59 0.15 -3.04 16 12 C 0.04 2.07 4.86 29.85 0.15 2.22 16 13 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.18 5.46 84.66 0.46 0.64 16 16 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 17 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 21 C -0.12 -2.43 3.46 -10.27 -0.04 -2.47 16 22 C -0.14 -3.40 6.86 31.12 0.21 -3.18 16 23 C -0.14 -2.59 8.08 31.12 0.25 -2.33 16 24 C -0.12 -1.75 6.55 31.12 0.20 -1.55 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.78 7.75 -2.39 -0.02 0.76 16 28 H 0.09 1.01 7.23 -2.39 -0.02 0.99 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.41 7.96 8.64 -92.71 -0.80 7.16 16 31 H 0.34 12.20 8.58 -89.69 -0.77 11.43 16 32 H 0.35 10.23 9.06 -89.70 -0.81 9.42 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.00 0.25 7.75 -2.38 -0.02 0.23 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.92 7.42 -2.39 -0.02 1.90 16 40 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 43 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.09 1.21 8.07 -2.39 -0.02 1.19 16 Total: -1.00 -68.25 353.53 0.76 -67.49 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -1.40 Total: 33.12 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 3.33 Total: -22.16 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.15 Total: -104.73 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.38 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.25 0.76 -67.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691606974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.010 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds