Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 H 1.08996 * 109.47255 * 55.00187 * 3 2 1 5 5 C 1.53006 * 109.46816 * 175.00179 * 3 2 1 6 6 C 1.53004 * 117.50119 * 8.74391 * 5 3 2 7 7 C 1.53002 * 117.49554 * 300.08418 * 5 3 2 8 8 N 1.46499 * 109.47083 * 294.99657 * 3 2 1 9 9 C 1.46499 * 120.00225 * 300.00126 * 8 3 2 10 10 C 1.34780 * 119.99546 * 120.00689 * 8 3 2 11 11 O 1.21279 * 120.00031 * 359.97438 * 10 8 3 12 12 C 1.50699 * 119.99563 * 180.02562 * 10 8 3 13 13 H 1.08998 * 109.47344 * 319.99444 * 12 10 8 14 14 N 1.46905 * 109.46909 * 199.99331 * 12 10 8 15 15 C 1.53001 * 109.47453 * 79.99649 * 12 10 8 16 16 C 1.53001 * 109.47392 * 184.99599 * 15 12 10 17 17 C 1.50693 * 109.47087 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00567 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99714 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99700 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47150 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47006 * 119.99802 * 21 19 17 24 24 H 1.48499 * 109.47209 * 239.99772 * 21 19 17 25 25 H 1.09002 * 109.47593 * 299.99977 * 1 2 3 26 26 H 1.09001 * 109.47605 * 60.00121 * 1 2 3 27 27 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47156 * 239.99755 * 2 1 3 29 29 H 1.09001 * 109.46963 * 119.99482 * 2 1 3 30 30 H 1.09001 * 115.55261 * 154.41895 * 5 3 2 31 31 H 1.08997 * 117.49595 * 0.02562 * 6 5 3 32 32 H 1.08993 * 117.50109 * 145.02335 * 6 5 3 33 33 H 1.09008 * 117.49624 * 214.98005 * 7 5 3 34 34 H 1.09000 * 117.50199 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.47391 * 270.00005 * 9 8 3 36 36 H 1.09001 * 109.46813 * 150.00061 * 9 8 3 37 37 H 1.09004 * 109.47041 * 30.00189 * 9 8 3 38 38 H 1.00896 * 110.99874 * 300.00218 * 14 12 10 39 39 H 1.00899 * 110.99591 * 63.95664 * 14 12 10 40 40 H 1.09001 * 109.47026 * 305.00033 * 15 12 10 41 41 H 1.09002 * 109.47031 * 64.99762 * 15 12 10 42 42 H 1.08998 * 109.46911 * 300.00319 * 16 15 12 43 43 H 1.09002 * 109.46899 * 60.00082 * 16 15 12 44 44 H 0.96997 * 120.00383 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 6 4.2843 0.0985 0.0171 7 6 4.1715 0.7993 1.3734 8 7 1.6523 2.0975 -1.2518 9 6 2.1138 1.5590 -2.5337 10 6 0.8713 3.1955 -1.2241 11 8 0.4889 3.6411 -0.1629 12 6 0.4721 3.8689 -2.5119 13 1 1.3203 3.8757 -3.1964 14 7 0.0562 5.2501 -2.2337 15 6 -0.6906 3.1045 -3.1481 16 6 -1.0141 3.7128 -4.5142 17 6 -2.1589 2.9595 -5.1411 18 1 -2.6109 2.1302 -4.6174 19 6 -2.6293 3.3291 -6.3833 20 7 -2.0786 4.3387 -7.0214 21 14 -4.0479 2.3949 -7.1607 22 1 -4.4865 1.3102 -6.2462 23 1 -5.1797 3.3253 -7.4028 24 1 -3.6057 1.8071 -8.4507 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0693 2.3193 -0.2845 31 1 3.6713 -0.7883 -0.1442 32 1 5.2621 0.0879 -0.4641 33 1 5.0754 1.2496 1.7838 34 1 3.4843 0.3740 2.1048 35 1 3.0652 2.0195 -2.7999 36 1 1.3761 1.7767 -3.3060 37 1 2.2436 0.4800 -2.4490 38 1 -0.7293 5.2707 -1.6008 39 1 0.8258 5.7937 -1.8727 40 1 -0.4124 2.0580 -3.2729 41 1 -1.5667 3.1732 -2.5032 42 1 -1.2922 4.7592 -4.3893 43 1 -0.1380 3.6441 -5.1591 44 1 -2.4098 4.5989 -7.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691609965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -24.882621 kcal Electronic energy + Delta-G solvation = -21499.678743 eV Core-core repulsion = 18452.303256 eV Total energy + Delta-G solvation = -3047.375488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35848 -38.29685 -35.25251 -35.19078 -32.84971 -32.52317 -30.10168 -27.92594 -26.75578 -25.72098 -23.51380 -23.00244 -22.33236 -20.59943 -19.56905 -18.70831 -17.25986 -16.55461 -16.15851 -15.83183 -15.39193 -15.27889 -14.62661 -14.33700 -13.92099 -13.62366 -13.28860 -12.98156 -12.80213 -12.60147 -12.36787 -12.05346 -11.96578 -11.82836 -11.53139 -11.36572 -11.16263 -10.92787 -10.89749 -10.72053 -10.61535 -10.50368 -10.20803 -9.94163 -9.77035 -9.34999 -8.98233 -8.57825 -8.33303 -8.17174 -5.93722 -3.95797 2.79755 3.03257 3.33793 3.41567 3.45271 3.62110 4.44497 4.50184 4.57258 4.75101 4.79914 4.86486 4.99214 5.07419 5.09038 5.25724 5.38852 5.41948 5.45643 5.50454 5.54281 5.59519 5.71650 5.76715 5.81866 5.85482 5.86703 5.90037 5.99123 6.05190 6.26230 6.43340 6.62174 6.69186 7.09264 7.38184 7.56724 7.76576 7.82425 7.96421 8.13549 8.33315 8.48703 9.12455 9.67472 11.17183 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004275 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.160793 B = 6548.575398 C = 6937.235672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.167 3.833 4 H 0.101 0.899 5 C -0.160 4.160 6 C -0.182 4.182 7 C -0.175 4.175 8 N -0.605 5.605 9 C 0.069 3.931 10 C 0.485 3.515 11 O -0.555 6.555 12 C 0.078 3.922 13 H 0.097 0.903 14 N -0.808 5.808 15 C -0.096 4.096 16 C 0.031 3.969 17 C -0.521 4.521 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.347 0.653 39 H 0.333 0.667 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.035 0.965 43 H 0.013 0.987 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.804 -8.289 13.733 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.063 3.937 4 H 0.119 0.881 5 C -0.180 4.180 6 C -0.219 4.219 7 C -0.213 4.213 8 N -0.338 5.338 9 C -0.074 4.074 10 C 0.273 3.727 11 O -0.433 6.433 12 C -0.038 4.038 13 H 0.115 0.885 14 N -0.335 5.335 15 C -0.134 4.134 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.412 -7.886 13.325 19.844 hybrid contribution -0.344 -0.787 0.440 0.965 sum 12.067 -8.673 13.765 20.256 Atomic orbital electron populations 1.21730 0.95059 1.01426 1.02616 1.21983 0.96847 0.96099 1.02228 1.20560 0.91331 0.93508 0.88331 0.88077 1.22664 0.95080 0.97240 1.02970 1.23149 1.02029 0.96339 1.00375 1.22949 1.02826 1.04267 0.91216 1.47935 1.50651 1.28453 1.06721 1.21955 1.00542 0.99603 0.85290 1.22749 0.76628 0.79849 0.93495 1.90620 1.55112 1.64714 1.32859 1.21851 1.00835 0.89410 0.91666 0.88495 1.59015 1.11493 1.09177 1.53823 1.21698 0.94027 0.97429 1.00276 1.19017 0.96060 0.97248 0.88250 1.21310 1.16829 1.15515 1.02306 0.92959 1.24986 0.96842 0.95161 0.97306 1.69980 1.41631 1.27237 1.14299 0.86612 0.82662 0.79936 0.79217 1.19860 1.21067 1.21104 0.92813 0.92157 0.92778 0.91174 0.91142 0.87751 0.88075 0.89012 0.88847 0.88689 0.92760 0.89335 0.91080 0.83902 0.85534 0.92653 0.92893 0.94677 0.96899 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 37.16 0.36 -1.41 16 2 C -0.13 -1.34 3.95 -26.73 -0.11 -1.45 16 3 C 0.17 1.94 2.43 -67.93 -0.17 1.77 16 4 H 0.10 1.41 6.90 -51.93 -0.36 1.06 16 5 C -0.16 -1.57 5.48 -90.61 -0.50 -2.06 16 6 C -0.18 -1.44 9.57 -26.69 -0.26 -1.70 16 7 C -0.18 -1.43 9.87 -26.69 -0.26 -1.69 16 8 N -0.60 -7.93 2.21 -173.93 -0.39 -8.31 16 9 C 0.07 0.78 9.22 59.85 0.55 1.34 16 10 C 0.49 7.83 6.92 -10.98 -0.08 7.76 16 11 O -0.56 -10.36 15.58 5.56 0.09 -10.28 16 12 C 0.08 1.33 2.31 -68.86 -0.16 1.17 16 13 H 0.10 1.58 7.21 -51.93 -0.37 1.21 16 14 N -0.81 -13.92 8.44 -5.65 -0.05 -13.97 16 15 C -0.10 -1.94 4.45 -26.73 -0.12 -2.06 16 16 C 0.03 0.79 4.86 -27.89 -0.14 0.66 16 17 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.66 5.65 -51.93 -0.29 0.37 16 29 H 0.07 0.61 6.71 -51.93 -0.35 0.26 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 0.76 5.88 -51.93 -0.31 0.45 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.09 0.74 7.58 -51.93 -0.39 0.34 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 1.15 4.83 -51.93 -0.25 0.90 16 37 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 38 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 39 H 0.33 5.03 9.06 -39.29 -0.36 4.67 16 40 H 0.05 1.05 6.43 -51.93 -0.33 0.71 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 345.68 15.07 5.21 5.21 Total: -1.00 -31.41 345.68 -8.10 -39.51 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.41 Total: 8.30 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.27 Total: -11.04 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.30 Total: -48.34 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.41 -8.10 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691609965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.630 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds