Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 H 1.08996 * 109.47255 * 55.00187 * 3 2 1 5 5 C 1.53006 * 109.46816 * 175.00179 * 3 2 1 6 6 C 1.53004 * 117.50119 * 8.74391 * 5 3 2 7 7 C 1.53002 * 117.49554 * 300.08418 * 5 3 2 8 8 N 1.46499 * 109.47083 * 294.99657 * 3 2 1 9 9 C 1.46499 * 120.00225 * 300.00126 * 8 3 2 10 10 C 1.34780 * 119.99546 * 120.00689 * 8 3 2 11 11 O 1.21279 * 120.00031 * 359.97438 * 10 8 3 12 12 C 1.50699 * 119.99563 * 180.02562 * 10 8 3 13 13 H 1.08998 * 109.47344 * 319.99444 * 12 10 8 14 14 N 1.46905 * 109.46909 * 199.99331 * 12 10 8 15 15 C 1.53001 * 109.47453 * 79.99649 * 12 10 8 16 16 C 1.53001 * 109.47392 * 184.99599 * 15 12 10 17 17 C 1.50693 * 109.47087 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00567 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99714 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00326 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99700 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47150 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47006 * 119.99802 * 21 19 17 24 24 H 1.48499 * 109.47209 * 239.99772 * 21 19 17 25 25 H 1.09002 * 109.47593 * 299.99977 * 1 2 3 26 26 H 1.09001 * 109.47605 * 60.00121 * 1 2 3 27 27 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47156 * 239.99755 * 2 1 3 29 29 H 1.09001 * 109.46963 * 119.99482 * 2 1 3 30 30 H 1.09001 * 115.55261 * 154.41895 * 5 3 2 31 31 H 1.08997 * 117.49595 * 0.02562 * 6 5 3 32 32 H 1.08993 * 117.50109 * 145.02335 * 6 5 3 33 33 H 1.09008 * 117.49624 * 214.98005 * 7 5 3 34 34 H 1.09000 * 117.50199 * 359.97438 * 7 5 3 35 35 H 1.09002 * 109.47391 * 270.00005 * 9 8 3 36 36 H 1.09001 * 109.46813 * 150.00061 * 9 8 3 37 37 H 1.09004 * 109.47041 * 30.00189 * 9 8 3 38 38 H 1.00896 * 110.99874 * 300.00218 * 14 12 10 39 39 H 1.00899 * 110.99591 * 63.95664 * 14 12 10 40 40 H 1.09001 * 109.47026 * 305.00033 * 15 12 10 41 41 H 1.09002 * 109.47031 * 64.99762 * 15 12 10 42 42 H 1.08998 * 109.46911 * 300.00319 * 16 15 12 43 43 H 1.09002 * 109.46899 * 60.00082 * 16 15 12 44 44 H 0.96997 * 120.00383 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 6 4.2843 0.0985 0.0171 7 6 4.1715 0.7993 1.3734 8 7 1.6523 2.0975 -1.2518 9 6 2.1138 1.5590 -2.5337 10 6 0.8713 3.1955 -1.2241 11 8 0.4889 3.6411 -0.1629 12 6 0.4721 3.8689 -2.5119 13 1 1.3203 3.8757 -3.1964 14 7 0.0562 5.2501 -2.2337 15 6 -0.6906 3.1045 -3.1481 16 6 -1.0141 3.7128 -4.5142 17 6 -2.1589 2.9595 -5.1411 18 1 -2.6109 2.1302 -4.6174 19 6 -2.6293 3.3291 -6.3833 20 7 -2.0786 4.3387 -7.0214 21 14 -4.0479 2.3949 -7.1607 22 1 -4.4865 1.3102 -6.2462 23 1 -5.1797 3.3253 -7.4028 24 1 -3.6057 1.8071 -8.4507 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0693 2.3193 -0.2845 31 1 3.6713 -0.7883 -0.1442 32 1 5.2621 0.0879 -0.4641 33 1 5.0754 1.2496 1.7838 34 1 3.4843 0.3740 2.1048 35 1 3.0652 2.0195 -2.7999 36 1 1.3761 1.7767 -3.3060 37 1 2.2436 0.4800 -2.4490 38 1 -0.7293 5.2707 -1.6008 39 1 0.8258 5.7937 -1.8727 40 1 -0.4124 2.0580 -3.2729 41 1 -1.5667 3.1732 -2.5032 42 1 -1.2922 4.7592 -4.3893 43 1 -0.1380 3.6441 -5.1591 44 1 -2.4098 4.5989 -7.8951 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691609965.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -44.632661 kcal Electronic energy + Delta-G solvation = -21500.535169 eV Core-core repulsion = 18452.303256 eV Total energy + Delta-G solvation = -3048.231914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51656 -39.25846 -36.84582 -36.18251 -34.82717 -33.50355 -31.94238 -29.03464 -28.04926 -27.17783 -25.11057 -23.82714 -23.02598 -22.30777 -20.78045 -19.74074 -18.61665 -18.27895 -17.41875 -16.93322 -16.80285 -16.40995 -16.19368 -15.63520 -15.01290 -14.99440 -14.46435 -14.30809 -13.99222 -13.74183 -13.70161 -13.44005 -13.39267 -13.17467 -12.79617 -12.52803 -12.48807 -12.21945 -12.18960 -12.01748 -11.75578 -11.70264 -11.65703 -11.35295 -11.18806 -10.99550 -10.81772 -10.48703 -9.64390 -9.60678 -8.13100 -6.23265 1.41752 1.42959 1.49896 1.55497 1.97107 2.45160 2.92620 3.20065 3.46354 3.64730 3.74361 3.86770 4.03837 4.08651 4.10772 4.15888 4.22616 4.30953 4.37545 4.60461 4.61884 4.72609 4.74114 4.81397 4.86677 4.89456 4.96541 5.00192 5.08866 5.14794 5.23181 5.25687 5.29085 5.33304 5.58067 5.62409 5.84273 5.98876 6.07625 6.30784 6.34488 6.49297 6.95109 7.08970 7.44895 8.98322 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004275 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.160793 B = 6548.575398 C = 6937.235672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.176 4.176 6 C -0.166 4.166 7 C -0.171 4.171 8 N -0.596 5.596 9 C 0.065 3.935 10 C 0.487 3.513 11 O -0.585 6.585 12 C 0.086 3.914 13 H 0.106 0.894 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.041 3.959 17 C -0.541 4.541 18 H 0.055 0.945 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.282 1.282 24 H -0.276 1.276 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.344 0.656 39 H 0.345 0.655 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.004 0.996 43 H -0.005 1.005 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.747 -10.584 14.068 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.063 3.937 4 H 0.092 0.908 5 C -0.195 4.195 6 C -0.202 4.202 7 C -0.208 4.208 8 N -0.327 5.327 9 C -0.077 4.077 10 C 0.274 3.726 11 O -0.466 6.466 12 C -0.030 4.030 13 H 0.124 0.876 14 N -0.348 5.348 15 C -0.118 4.118 16 C 0.004 3.996 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.195 4.195 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.188 1.188 23 H -0.208 1.208 24 H -0.202 1.202 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.014 0.986 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.388 -10.213 13.664 21.685 hybrid contribution -0.594 -0.068 0.353 0.695 sum 12.794 -10.280 14.018 21.584 Atomic orbital electron populations 1.21719 0.96486 1.01863 1.00698 1.21973 0.95425 0.95080 1.03915 1.20624 0.92757 0.93897 0.86403 0.90833 1.22482 0.93503 0.98312 1.05214 1.23229 1.02160 0.95153 0.99691 1.23048 1.02911 1.03653 0.91195 1.47957 1.49270 1.27239 1.08216 1.22094 1.00642 1.01180 0.83783 1.22366 0.77235 0.80648 0.92365 1.90607 1.56632 1.65824 1.33491 1.21631 0.99750 0.89160 0.92427 0.87598 1.58997 1.12078 1.09645 1.54031 1.21407 0.94835 0.98270 0.97286 1.18812 0.94649 0.95565 0.90584 1.21730 1.17629 1.15798 1.02797 0.92706 1.25880 0.99619 0.96040 0.97937 1.70106 1.43268 1.28782 1.14800 0.85500 0.79019 0.78685 0.78434 1.18825 1.20781 1.20183 0.94040 0.94761 0.91139 0.89740 0.88997 0.88796 0.87111 0.87980 0.88074 0.88192 0.91040 0.91032 0.88746 0.84248 0.84181 0.91294 0.94290 0.97757 0.98630 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.80 71.98 0.71 -2.65 16 2 C -0.13 -2.23 3.95 30.59 0.12 -2.11 16 3 C 0.17 3.67 2.43 44.99 0.11 3.78 16 4 H 0.07 2.06 6.90 -2.39 -0.02 2.04 16 5 C -0.18 -3.09 5.48 -10.79 -0.06 -3.14 16 6 C -0.17 -2.05 9.57 30.62 0.29 -1.76 16 7 C -0.17 -2.33 9.87 30.62 0.30 -2.03 16 8 N -0.60 -15.12 2.21 -822.58 -1.82 -16.95 16 9 C 0.06 1.36 9.22 127.77 1.18 2.54 16 10 C 0.49 15.81 6.92 87.66 0.61 16.42 16 11 O -0.58 -22.29 15.58 -3.02 -0.05 -22.34 16 12 C 0.09 2.97 2.31 44.17 0.10 3.08 16 13 H 0.11 3.46 7.21 -2.39 -0.02 3.44 16 14 N -0.82 -29.00 8.44 -171.79 -1.45 -30.45 16 15 C -0.08 -3.27 4.45 30.60 0.14 -3.14 16 16 C 0.04 2.14 4.86 29.85 0.15 2.29 16 17 C -0.54 -30.75 9.11 25.60 0.23 -30.51 16 18 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 19 C 0.00 0.18 5.46 84.66 0.46 0.64 16 20 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 21 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.03 0.93 7.75 -2.39 -0.02 0.91 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.28 5.65 -2.39 -0.01 1.27 16 29 H 0.09 1.28 6.71 -2.39 -0.02 1.27 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 1.18 5.88 -2.39 -0.01 1.17 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.10 1.28 7.58 -2.39 -0.02 1.26 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.78 4.83 -2.39 -0.01 1.77 16 37 H 0.09 1.55 6.34 -2.38 -0.02 1.53 16 38 H 0.34 12.50 8.58 -89.70 -0.77 11.73 16 39 H 0.35 10.60 9.06 -89.69 -0.81 9.79 16 40 H 0.07 2.62 6.43 -2.39 -0.02 2.60 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 43 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -68.51 345.68 2.74 -65.77 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.58 Total: 30.47 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.33 Total: -16.60 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -2.99 Total: -103.70 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.51 2.74 -65.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691609965.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.137 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds