Wall clock time and date at job start Mon Mar 30 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 H 1.09002 * 109.47512 * 305.00160 * 3 2 1 5 5 C 1.53006 * 109.47122 * 185.00048 * 3 2 1 6 6 C 1.53001 * 117.49768 * 128.74835 * 5 3 2 7 7 C 1.52999 * 117.49532 * 60.09021 * 5 3 2 8 8 N 1.46496 * 109.47347 * 65.00121 * 3 2 1 9 9 C 1.46505 * 119.99822 * 60.00003 * 8 3 2 10 10 C 1.34775 * 120.00555 * 240.00305 * 8 3 2 11 11 O 1.21283 * 119.99555 * 359.97438 * 10 8 3 12 12 C 1.50700 * 120.00303 * 180.02562 * 10 8 3 13 13 H 1.08990 * 109.47465 * 39.99472 * 12 10 8 14 14 N 1.46901 * 109.46865 * 159.99804 * 12 10 8 15 15 C 1.53000 * 109.46738 * 279.99439 * 12 10 8 16 16 C 1.52997 * 109.47060 * 175.00110 * 15 12 10 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99563 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00432 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46838 * 89.99826 * 21 19 17 23 23 H 1.48497 * 109.47419 * 209.99978 * 21 19 17 24 24 H 1.48499 * 109.47011 * 330.00539 * 21 19 17 25 25 H 1.09001 * 109.47178 * 59.99613 * 1 2 3 26 26 H 1.08996 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46678 * 299.99733 * 1 2 3 28 28 H 1.09003 * 109.47160 * 240.00067 * 2 1 3 29 29 H 1.08997 * 109.47267 * 119.99881 * 2 1 3 30 30 H 1.08998 * 115.54881 * 274.41765 * 5 3 2 31 31 H 1.09008 * 117.49978 * 0.02562 * 6 5 3 32 32 H 1.09001 * 117.50258 * 145.02162 * 6 5 3 33 33 H 1.09001 * 117.49766 * 214.97584 * 7 5 3 34 34 H 1.08996 * 117.50208 * 359.97438 * 7 5 3 35 35 H 1.09003 * 109.47082 * 269.99995 * 9 8 3 36 36 H 1.08997 * 109.47254 * 30.00345 * 9 8 3 37 37 H 1.09006 * 109.46993 * 150.00539 * 9 8 3 38 38 H 1.00897 * 111.00316 * 296.03838 * 14 12 10 39 39 H 1.00902 * 111.00138 * 60.00335 * 14 12 10 40 40 H 1.09002 * 109.47398 * 295.00279 * 15 12 10 41 41 H 1.09001 * 109.47194 * 55.00459 * 15 12 10 42 42 H 1.09002 * 109.47153 * 300.00319 * 16 15 12 43 43 H 1.08998 * 109.47533 * 59.99948 * 16 15 12 44 44 H 0.97002 * 119.99731 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1257 6 6 4.1830 2.3249 -1.2135 7 6 4.1713 0.8028 -1.3754 8 7 1.6525 2.0975 1.2518 9 6 2.1140 1.5589 2.5337 10 6 0.8714 3.1955 1.2242 11 8 0.4897 3.6415 0.1630 12 6 0.4733 3.8696 2.5119 13 1 1.3219 3.8766 3.1958 14 7 0.0573 5.2506 2.2333 15 6 -0.6890 3.1056 3.1493 16 6 -1.0115 3.7144 4.5153 17 6 -2.1559 2.9616 5.1434 18 1 -2.6078 2.1315 4.6208 19 6 -2.6254 3.3318 6.3858 20 7 -2.0747 4.3423 7.0225 21 14 -4.0444 2.3990 7.1641 22 1 -3.5121 1.2745 7.9750 23 1 -4.8195 3.3159 8.0380 24 1 -4.9296 1.8649 6.0981 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.1138 1.3406 0.8102 31 1 3.5033 2.9034 -1.8394 32 1 5.1388 2.8004 -0.9935 33 1 5.1196 0.2775 -1.2617 34 1 3.4841 0.3792 -2.1077 35 1 1.3915 0.8313 2.9034 36 1 3.0806 1.0741 2.3972 37 1 2.2132 2.3708 3.2543 38 1 0.8267 5.7940 1.8715 39 1 -0.7287 5.2710 1.6011 40 1 -1.5656 3.1739 2.5050 41 1 -0.4108 2.0591 3.2745 42 1 -0.1349 3.6461 5.1596 43 1 -1.2896 4.7609 4.3902 44 1 -2.4048 4.6025 7.8968 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691609966.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:39 Heat of formation + Delta-G solvation = -48.293215 kcal Electronic energy + Delta-G solvation = -21465.599765 eV Core-core repulsion = 18417.209118 eV Total energy + Delta-G solvation = -3048.390647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47033 -39.02447 -36.81588 -36.31935 -34.83252 -33.65554 -31.93110 -28.96034 -28.04291 -27.28013 -25.20168 -23.56616 -22.70527 -22.34666 -20.95744 -20.06187 -18.65960 -18.32316 -17.47312 -16.91825 -16.71199 -16.39013 -15.91053 -15.51635 -15.05647 -14.97820 -14.62217 -14.29426 -14.03228 -13.87099 -13.65245 -13.49144 -13.34513 -13.07029 -12.78198 -12.50217 -12.46600 -12.41342 -12.22233 -12.09660 -11.80746 -11.67792 -11.59291 -11.32555 -11.20458 -10.94829 -10.91702 -10.47897 -9.64088 -9.60373 -8.12978 -6.23168 1.41934 1.43564 1.51322 1.54581 1.97063 2.45199 2.87473 3.20066 3.46836 3.59877 3.74010 3.91642 4.00841 4.06142 4.10232 4.22343 4.28057 4.29082 4.35750 4.46672 4.63978 4.75887 4.76448 4.79816 4.87990 4.89751 4.99432 4.99758 5.04467 5.10420 5.20597 5.24548 5.26477 5.35748 5.57484 5.62968 5.84658 5.98946 6.07779 6.30939 6.34355 6.49489 6.94969 7.09841 7.44897 8.98234 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027051 B = 0.004251 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.821735 B = 6584.385943 C = 7018.219547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.166 3.834 4 H 0.071 0.929 5 C -0.170 4.170 6 C -0.188 4.188 7 C -0.153 4.153 8 N -0.595 5.595 9 C 0.066 3.934 10 C 0.487 3.513 11 O -0.585 6.585 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.078 4.078 16 C 0.042 3.958 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.268 1.268 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.345 0.655 39 H 0.344 0.656 40 H 0.037 0.963 41 H 0.066 0.934 42 H -0.005 1.005 43 H 0.004 0.996 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.084 -9.777 -14.354 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.062 3.938 4 H 0.089 0.911 5 C -0.189 4.189 6 C -0.225 4.225 7 C -0.190 4.190 8 N -0.327 5.327 9 C -0.076 4.076 10 C 0.274 3.726 11 O -0.466 6.466 12 C -0.031 4.031 13 H 0.127 0.873 14 N -0.348 5.348 15 C -0.116 4.116 16 C 0.005 3.995 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.783 3.217 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.192 1.192 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.014 0.986 43 H 0.022 0.978 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.721 -9.398 -13.952 21.708 hybrid contribution -0.688 -0.144 -0.350 0.785 sum 13.033 -9.542 -14.302 21.574 Atomic orbital electron populations 1.21716 0.96637 1.01789 1.00591 1.21813 0.95166 0.94861 1.04056 1.20720 0.92713 0.93830 0.86514 0.91065 1.22583 0.93965 1.06881 0.95463 1.23040 1.02663 0.94399 1.02435 1.23025 1.03043 0.94576 0.98354 1.47950 1.49268 1.27283 1.08166 1.22083 1.01394 1.00394 0.83758 1.22329 0.77248 0.80628 0.92354 1.90605 1.56694 1.65839 1.33483 1.21670 0.99778 0.89137 0.92487 0.87332 1.59003 1.12044 1.09704 1.54020 1.21344 0.94769 0.98289 0.97207 1.18803 0.94617 0.95524 0.90602 1.21702 1.17749 1.15779 1.02839 0.92776 1.25878 0.99613 0.96020 0.97935 1.70107 1.43395 1.28660 1.14775 0.85553 0.79238 0.78486 0.78385 1.19509 1.20967 1.19232 0.94098 0.91213 0.94840 0.89049 0.90197 0.86436 0.90364 0.88031 0.86766 0.88245 0.91935 0.88182 0.90557 0.84185 0.84294 0.94453 0.91512 0.98627 0.97779 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.80 71.98 0.71 -2.72 16 2 C -0.12 -2.21 5.28 30.59 0.16 -2.05 16 3 C 0.17 3.63 2.26 44.99 0.10 3.73 16 4 H 0.07 1.99 6.66 -2.39 -0.02 1.97 16 5 C -0.17 -2.87 5.15 -10.79 -0.06 -2.93 16 6 C -0.19 -3.22 10.18 30.62 0.31 -2.91 16 7 C -0.15 -1.99 9.68 30.62 0.30 -1.69 16 8 N -0.60 -15.00 2.21 -822.57 -1.82 -16.82 16 9 C 0.07 1.34 8.50 127.77 1.09 2.42 16 10 C 0.49 15.78 6.92 87.66 0.61 16.39 16 11 O -0.59 -22.29 15.58 -3.04 -0.05 -22.33 16 12 C 0.08 2.92 2.42 44.17 0.11 3.03 16 13 H 0.11 3.50 6.31 -2.39 -0.02 3.49 16 14 N -0.82 -29.00 8.44 -171.81 -1.45 -30.45 16 15 C -0.08 -3.21 4.71 30.59 0.14 -3.06 16 16 C 0.04 2.18 4.86 29.85 0.15 2.33 16 17 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 18 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 19 C 0.00 0.20 5.46 84.65 0.46 0.66 16 20 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 21 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 27 H 0.03 0.92 7.75 -2.38 -0.02 0.90 16 28 H 0.09 1.32 7.13 -2.39 -0.02 1.31 16 29 H 0.08 1.29 7.51 -2.39 -0.02 1.27 16 30 H 0.12 1.76 6.59 -2.39 -0.02 1.75 16 31 H 0.08 1.60 8.05 -2.38 -0.02 1.58 16 32 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 33 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.23 7.59 -2.39 -0.02 1.21 16 35 H 0.06 1.32 7.65 -2.39 -0.02 1.30 16 36 H 0.10 1.42 6.43 -2.39 -0.02 1.40 16 37 H 0.08 1.63 5.94 -2.38 -0.01 1.62 16 38 H 0.35 10.59 9.06 -89.70 -0.81 9.78 16 39 H 0.34 12.52 8.58 -89.69 -0.77 11.75 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.55 6.94 -2.39 -0.02 2.54 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.00 0.22 7.75 -2.39 -0.02 0.20 16 44 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -68.97 349.53 2.71 -66.26 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.59 Total: 30.70 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.30 Total: -17.48 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -2.99 Total: -103.63 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.97 2.71 -66.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691609966.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.970 kcal (2) G-P(sol) polarization free energy of solvation -68.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds